cluster # 5851

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Schistosoma mansoni
cluster # 5851 cluster # 5851 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5851#0 length = 661 sequences # 1

consensus_5851#1 length = 309 sequences # 2

consensusID : consensus_5851#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 661
fasta sequence

                              [GAGAGGGAGGGTGGCCCCTCCCCACTCTCGGCCGTACCAGGGCATTTGGGGACTTGAGGCGCCTAAAATGGTTTAAATCTGAGGTCATTGAGAATCCTGCTATCTTTTATTTTTACTCACCTGATAAGTATTAGGATGCACTCATTTTGGTTAAAATTTATTTGAGCTATATCCTTTATAACTATCATTATTCTTGCCGTCCTTTTAATTTCTTGATATTGTAATTTCGTGTTGTATGGTTCATTTCTTGGTACCTAGCAGTGCCATGCTTTTTCCTTAGAACAAACGGAGTGTTTTAAGCAAAGGATATAGATGAGTTGTAATTAGGCATCAACTTGTGTATATTAAGGATTCGCCGGCTTCGAAAACGTTGATATTCACTGAATTAGGAGTAAGATAAACGAAGCCTCAGCGGTTAGAAAAATATATGGAATTATTTAGTAAGATCGTCGATAGTGTATCTGAGTATAGGTCTTGAGATCGGGATTAATCAAATAGAGAGTTTGATGATTGATACGACTCANAATGAATTAGAGTATATCAGACGCATTCTGTTTATAGTAGGTACTTTTATTATTATATACTTACACANATTTCTTTATTTTGTCTTTCATTCCATCTTTTTAAGNCTCTACGATTGGTGNCACTATTTTCTGCTTAT]

[+] EMBL CD064649             [GAGAGGGAGGGTGGCCCCTCCCCACTCTCGGCCGTACCAGGGCATTTGGGGACTTGAGGCGCCTAAAATGGTTTAAATCTGAGGTCATTGAGAATCCTGCTATCTTTTATTTTTACTCACCTGATAAGTATTAGGATGCACTCATTTTGGTTAAAATTTATTTGAGCTATATCCTTTATAACTATCATTATTCTTGCCGTCCTTTTAATTTCTTGATATTGTAATTTCGTGTTGTATGGTTCATTTCTTGGTACCTAGCAGTGCCATGCTTTTTCCTTAGAACAAACGGAGTGTTTTAAGCAAAGGATATAGATGAGTTGTAATTAGGCATCAACTTGTGTATATTAAGGATTCGCCGGCTTCGAAAACGTTGATATTCACTGAATTAGGAGTAAGATAAACGAAGCCTCAGCGGTTAGAAAAATATATGGAATTATTTAGTAAGATCGTCGATAGTGTATCTGAGTATAGGTCTTGAGATCGGGATTAATCAAATAGAGAGTTTGATGATTGATACGACTCANAATGAATTAGAGTATATCAGACGCATTCTGTTTATAGTAGGTACTTTTATTATTATATACTTACACANATTTCTTTATTTTGTCTTTCATTCCATCTTTTTAAGNCTCTACGATTGGTGNCACTATTTTCTGCTTAT]




>consensus_5851#0
GAGAGGGAGGGTGGCCCCTCCCCACTCTCGGCCGTACCAGGGCATTTGGGGACTTGAGGC
GCCTAAAATGGTTTAAATCTGAGGTCATTGAGAATCCTGCTATCTTTTATTTTTACTCAC
CTGATAAGTATTAGGATGCACTCATTTTGGTTAAAATTTATTTGAGCTATATCCTTTATA
ACTATCATTATTCTTGCCGTCCTTTTAATTTCTTGATATTGTAATTTCGTGTTGTATGGT
TCATTTCTTGGTACCTAGCAGTGCCATGCTTTTTCCTTAGAACAAACGGAGTGTTTTAAG
CAAAGGATATAGATGAGTTGTAATTAGGCATCAACTTGTGTATATTAAGGATTCGCCGGC
TTCGAAAACGTTGATATTCACTGAATTAGGAGTAAGATAAACGAAGCCTCAGCGGTTAGA
AAAATATATGGAATTATTTAGTAAGATCGTCGATAGTGTATCTGAGTATAGGTCTTGAGA
TCGGGATTAATCAAATAGAGAGTTTGATGATTGATACGACTCANAATGAATTAGAGTATA
TCAGACGCATTCTGTTTATAGTAGGTACTTTTATTATTATATACTTACACANATTTCTTT
ATTTTGTCTTTCATTCCATCTTTTTAAGNCTCTACGATTGGTGNCACTATTTTCTGCTTA
T

consensusID : consensus_5851#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 309
fasta sequence

                              [AGGCTATATACCGTGGCCATGTGATAGCATTTCGCAGAGCGGAGGGTGGCACCTCCCCACTCTCGGACGTATCAGGGCAAGTTCAACCTCGGCATTAATACTTAAAATTTTATTTCGTGAATCTCTTAAAAATTGCAG-TCTAATTTCCATACCAAACTCCTATATATCAACACCTGTTTGTGTGATNCATGACATACATTCCAAGAGGATTTCTGTAGCGCGGTTCCGACTTGTTGCTAAATACACAGTCAATGCGAGAGGTAATGTTTTACAGTTGATTTTGCCATTAACATTTTCATGCCACGCAAT]

[+] EMBL AA938814             [AGGCTATATACCGTGGCCATGTGATAGCATTTCGCAGAGCGGAGGGTGGCACCTCCCCACTCTCGGACGTATCAGGGCAAGTTCAACCTCGGCATTAATACTTAAAATTTTATTTCGTGAATCTCTTAAAAATTGCAG TCTAATTTCCATA                                                                                                                                                              ]
[-] EMBL CD064565             [                                   AGAG GGAGGGTGGCACCTCCCCACTCTCGGCCGTAACAGGGCAAGTTCAACCTCGGCATTAATACTTACAATTTTATTTCGTGAATCTCTTAAAAATTGCAGTTCTAATATACATTCCAAACTCCTATATATCAACACCTGTTTGTGTGATNCATGACATACATTCCAAGAGGATTTCTGTAGCGCGGTTCCGACTTGTTGCTAAATACACAGTCAATGCGAGAGGTAATGTTTTACAGTTGATTTTGCCATTAACATTTTCATGCCACGCAAT]




>consensus_5851#1
AGGCTATATACCGTGGCCATGTGATAGCATTTCGCAGAGCGGAGGGTGGCACCTCCCCAC
TCTCGGACGTATCAGGGCAAGTTCAACCTCGGCATTAATACTTAAAATTTTATTTCGTGA
ATCTCTTAAAAATTGCAGTCTAATTTCCATACCAAACTCCTATATATCAACACCTGTTTG
TGTGATNCATGACATACATTCCAAGAGGATTTCTGTAGCGCGGTTCCGACTTGTTGCTAA
ATACACAGTCAATGCGAGAGGTAATGTTTTACAGTTGATTTTGCCATTAACATTTTCATG
CCACGCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5851#0      GAGAGGGAGGGTGGCCCCTCCCCACTCTCGGCCGTACCAGGGCATTTGGGGACTTGAGGC 60
consensus_5851#1      ------------------------------------------------------------
                                                                                  

consensus_5851#0      GCCTAAAATGGTTTAAATCTGAGGTCATTGAGAATCCTGCTATCTTTTATTTTTACTCAC 120
consensus_5851#1      ------------------------------------------------------------
                                                                                  

consensus_5851#0      CTGATAAGTATTAGGATGCACTCATTTTGGTTAAAATTTATTTGAGCTATATCCTTTATA 180
consensus_5851#1      ------------------------------------------------------------
                                                                                  

consensus_5851#0      ACTATCATTATTCTTGCCGTCCTTTTAATTTCTTGATATTGTAATTTCGTGTTGTATGGT 240
consensus_5851#1      ------------------------------------------------------------
                                                                                  

consensus_5851#0      TCATTTCTTGGTACCTAGCAGTGCCATGCTTTTTCCTTAGAACAAACGG-AGTGTTTTAA 299
consensus_5851#1      -------------------------AGGCTATATACCGTGGCCATGTGATAGCATTTCGC 35
                                               * *** * * *   *  **   *  **  ***   

consensus_5851#0      GCAAAGGATATAGATGAGTTGTAATTAGGCATCAACTTGTGTATATTAAGGATTCGCCGG 359
consensus_5851#1      AGAGCGGA-------GGGTGGCACCTCCCCACT--CTCGGACGTATCAGGGCAAGTTCAA 86
                        *  ***       * ** * *  *   **    ** *    *** * **      *  

consensus_5851#0      CTTCGAAAACGTTGATATTCACTGAATTAGGAGTAAGATAAACGAAGCCTCAGCGGTTAG 419
consensus_5851#1      CCTCGG---CATTAATACTTAAAATTTTATTTCGTGAATCTCTTAAAAATT-GCAGTCTA 142
                      * ***    * ** *** * *     ***        **     **   *  ** **   

consensus_5851#0      AAAAATATATGGAATTATTTAGTAAGATCGTCGATAGTGTATCTGAGTATAGGTCTTGAG 479
consensus_5851#1      ATTTCCATACCAAACTCCTATATA---TCAACACCTGTTTGTGTGATNCATGACATACAT 199
                      *     ***   ** *  *   **   **  *    ** * * ***     *   *  * 

consensus_5851#0      ATCGGGATTAATCAAATAGAGAGTTTGATGATTGATACGACTCANAATGAATTAGAGTAT 539
consensus_5851#1      TCCAAGAGGATTTCTGTAGCGCGGTTCCGACTTGTTGCTAAATACA------CAGTCAAT 253
                        *  **  * *    *** * * **     *** * * *   * *       **   **

consensus_5851#0      ATCAGACGCATTCTGTTTATAGTAGGTACTTTTATTATTATATACTTAC-ACANATTTCT 598
consensus_5851#1      GCGAGAGGTAATGT-TTTACAGTTGATTTTGCCATTAACATTTTCATGCCACGCAAT--- 309
                         *** * * * * **** *** * *  *   ****  ** * * * * **  * *   

consensus_5851#0      TTATTTTGTCTTTCATTCCATCTTTTTAAGNCTCTACGATTGGTGNCACTATTTTCTGCT 658
consensus_5851#1      ------------------------------------------------------------
                                                                                  

consensus_5851#0      TAT 661
consensus_5851#1      ---