cluster # 5859

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Schistosoma mansoni
cluster # 5859 cluster # 5859 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5859#0 length = 628 sequences # 2

consensus_5859#1 length = 467 sequences # 1

consensusID : consensus_5859#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 628
fasta sequence

                              [CCGTCATAATCAGACTTAAATTATCAAAGGCTGGACGTTGTATGAAGCTAGGATGGCAGTTAAAGTTGCACTTAACTGTCTGAAGGTTCTCTGCATACAGAGTCATGTTGTCCATGGATATGTTGGCAATAAAATAGCTGTTTTCCCCTTGCAAGTCTTAGGCATAGAAGTTGACTTTATTAACTCTGTACACCCCTCAAATCACACAGGCTATGATTTTGTCAAGGGGCAAGTGTTGGATGCTGCGAGCATGAAAGATTTATATCTTGGTTTGAAAGCGAATGGCCTCAACAAGTATACTCATGTGCTCACAAGTTATCTGGCGTCGCCAAGCTCTTTGGAAGCAGTCGCAGATATTGTATCCGACCTCAAAAAAGAGAACTCAAATTTAAAATATTACTGCGATCCCGTTCTAGGTGATAATGGAAAGCTTTATGTCCCACCTGAACTCGTCCAGATATACCAAGAAAGAATACTCCCTTTATCAGATGTCATTTTCCCAAACCAATTCGAAGCAGATATACTAAGTGGTATACCAATAACAGATGAAAAGTCTGCTTTAAATTGTATCAACTATTTACATAAAAAATATCATATTCCAACTGTAATTATTACAAGTACTAATATA]

[+] EMBL CD152940             [CCGTCATAATCAGACTTAAATTATCAAAGGCTGGACGTTGTATGAAGCTAGGATGGCAGTTAAAGTTGCACTTAACTGTCTGAAGGTTCTCTGCATACAGAGTCATGTTGTCCATGGATATGTTGGCAATAAAATAGCTGTTTTCCCCTTGCAAGTCTTAGGCATAGAAGTTGACTTTATTAACTCTGTACACCCCTCAAATCACACAGGCTATGATTTTGTCAAGGGGCAAGTGTTGGATGCTGCGAGCATGAAAGATTTATATCTTGGTTTGAAAGCGAATGGCCTCAACAAGTATACTCATGTGCTCACAAGTTATCTGGCGTCGCCAAGCTCTTTGGAAGCAGTCGCAGATATTGTATCCGACCTCAAAAAAGAGAACTCAAATTTAAAATATTACTGCGATCCCGTTCTAGGTGATAATGGAAAGCTTTATGTCCCACCTGAACTCGTCCAGATATACCAAGAAAGAATACTCCCTTTATCAGATGTCATTTTCCCAAACCAATTCGAAGCAGATATACTAAGTGGTATACCAATAACAGATGAAAAGTCTGCTTTAAATTGTATCAACTATTTACATAAAAAATATCATATTCCAACTGTAATTATTACAAGTACTAATATA]
[+] EMBL CD152674             [CCGTCATAATCAGACTTAAATTATCAAAGGCTGGACGTTGTATGAAGCTAGGATGGCAGTTAAAGTTGCACTTAACTGTCTGAAGGTTCTCTGCATACAGAGTCATGTTGTCCATGGATATGTTGGCAATAAAATAGCTGTTTTTCCCTTGCAAGTCTTAGGCATAGAAGTTGACTTTATTAACTCTGTACAGTTTTCAAATCACACAGGCTATGATTTTGTCAAGGGGCAAGTGTTGGATGCTGCGAGCATGAAAGATTTGTATCTTGGTTTGAAAGCGAATGGCCTCAACAAGTATACTCATGTGCTCACAGGTTATCTGGCGTCGCCAAGCTCTTTGGAAGCAGTCGCAGAT                                                                                                                                                                                                                                                                                 ]




>consensus_5859#0
CCGTCATAATCAGACTTAAATTATCAAAGGCTGGACGTTGTATGAAGCTAGGATGGCAGT
TAAAGTTGCACTTAACTGTCTGAAGGTTCTCTGCATACAGAGTCATGTTGTCCATGGATA
TGTTGGCAATAAAATAGCTGTTTTCCCCTTGCAAGTCTTAGGCATAGAAGTTGACTTTAT
TAACTCTGTACACCCCTCAAATCACACAGGCTATGATTTTGTCAAGGGGCAAGTGTTGGA
TGCTGCGAGCATGAAAGATTTATATCTTGGTTTGAAAGCGAATGGCCTCAACAAGTATAC
TCATGTGCTCACAAGTTATCTGGCGTCGCCAAGCTCTTTGGAAGCAGTCGCAGATATTGT
ATCCGACCTCAAAAAAGAGAACTCAAATTTAAAATATTACTGCGATCCCGTTCTAGGTGA
TAATGGAAAGCTTTATGTCCCACCTGAACTCGTCCAGATATACCAAGAAAGAATACTCCC
TTTATCAGATGTCATTTTCCCAAACCAATTCGAAGCAGATATACTAAGTGGTATACCAAT
AACAGATGAAAAGTCTGCTTTAAATTGTATCAACTATTTACATAAAAAATATCATATTCC
AACTGTAATTATTACAAGTACTAATATA

consensusID : consensus_5859#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence

                              [TTCCTTGAATGTGGCCGTCATAATCAGACTTAAATTATCAAGGGCTGGACGTTGTATGAAGCTAGGATGGCAGTTAAAGTTGCACTTAACTGTCTGAAGGTTCTCTGCATACAGAGTCATGTTGTCCATGGATATGTTGGCAATAAAATAGCTGTTTTTCCCTTGCAAGTTTGCGTACTACTAATCATAACCTATACAGGCTATGATTTTGTCAAGGGGCAAGTGTTGGATGCTGCGAGCATGAAAGATTTATATCTTGGTTTGAAAGCGAATGGCCTCGACAAGTATACTCATGTGCTCACAGGTTATCTGGCGTCGCCAAGCTCTTTGGAAGCAGTCGCAGATATTGTATCCGACCTCAAAAAAGAGAACTCAAATTTAAAATATTACTGCGATCCCGTTCTAGGTGATAATGGAAAGCTTTATGTCCCACCTGAACTCGTCCAGATATACCAAGAAAGAATACT]

[+] EMBL CD191973             [TTCCTTGAATGTGGCCGTCATAATCAGACTTAAATTATCAAGGGCTGGACGTTGTATGAAGCTAGGATGGCAGTTAAAGTTGCACTTAACTGTCTGAAGGTTCTCTGCATACAGAGTCATGTTGTCCATGGATATGTTGGCAATAAAATAGCTGTTTTTCCCTTGCAAGTTTGCGTACTACTAATCATAACCTATACAGGCTATGATTTTGTCAAGGGGCAAGTGTTGGATGCTGCGAGCATGAAAGATTTATATCTTGGTTTGAAAGCGAATGGCCTCGACAAGTATACTCATGTGCTCACAGGTTATCTGGCGTCGCCAAGCTCTTTGGAAGCAGTCGCAGATATTGTATCCGACCTCAAAAAAGAGAACTCAAATTTAAAATATTACTGCGATCCCGTTCTAGGTGATAATGGAAAGCTTTATGTCCCACCTGAACTCGTCCAGATATACCAAGAAAGAATACT]




>consensus_5859#1
TTCCTTGAATGTGGCCGTCATAATCAGACTTAAATTATCAAGGGCTGGACGTTGTATGAA
GCTAGGATGGCAGTTAAAGTTGCACTTAACTGTCTGAAGGTTCTCTGCATACAGAGTCAT
GTTGTCCATGGATATGTTGGCAATAAAATAGCTGTTTTTCCCTTGCAAGTTTGCGTACTA
CTAATCATAACCTATACAGGCTATGATTTTGTCAAGGGGCAAGTGTTGGATGCTGCGAGC
ATGAAAGATTTATATCTTGGTTTGAAAGCGAATGGCCTCGACAAGTATACTCATGTGCTC
ACAGGTTATCTGGCGTCGCCAAGCTCTTTGGAAGCAGTCGCAGATATTGTATCCGACCTC
AAAAAAGAGAACTCAAATTTAAAATATTACTGCGATCCCGTTCTAGGTGATAATGGAAAG
CTTTATGTCCCACCTGAACTCGTCCAGATATACCAAGAAAGAATACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5859#0      --------------CCGTCATAATCAGACTTAAATTATCAAAGGCTGGACGTTGTATGAA 46
consensus_5859#1      TTCCTTGAATGTGGCCGTCATAATCAGACTTAAATTATCAAGGGCTGGACGTTGTATGAA 60
                                    *************************** ******************

consensus_5859#0      GCTAGGATGGCAGTTAAAGTTGCACTTAACTGTCTGAAGGTTCTCTGCATACAGAGTCAT 106
consensus_5859#1      GCTAGGATGGCAGTTAAAGTTGCACTTAACTGTCTGAAGGTTCTCTGCATACAGAGTCAT 120
                      ************************************************************

consensus_5859#0      GTTGTCCATGGATATGTTGGCAATAAAATAGCTGTTTTCCCCTTGCAAGTCTTAGGCATA 166
consensus_5859#1      GTTGTCCATGGATATGTTGGCAATAAAATAGCTGTTTTTCCCTTGCAAGTTT---GCGTA 177
                      ************************************** *********** *   ** **

consensus_5859#0      GAAGTTGACTTTATTAACTCTGTACACCCCTCAAATCACACAGGCTATGATTTTGTCAAG 226
consensus_5859#1      ----------CTACTAAT-----------CATAACCTATACAGGCTATGATTTTGTCAAG 216
                                 ** ***            *  **   * *********************

consensus_5859#0      GGGCAAGTGTTGGATGCTGCGAGCATGAAAGATTTATATCTTGGTTTGAAAGCGAATGGC 286
consensus_5859#1      GGGCAAGTGTTGGATGCTGCGAGCATGAAAGATTTATATCTTGGTTTGAAAGCGAATGGC 276
                      ************************************************************

consensus_5859#0      CTCAACAAGTATACTCATGTGCTCACAAGTTATCTGGCGTCGCCAAGCTCTTTGGAAGCA 346
consensus_5859#1      CTCGACAAGTATACTCATGTGCTCACAGGTTATCTGGCGTCGCCAAGCTCTTTGGAAGCA 336
                      *** *********************** ********************************

consensus_5859#0      GTCGCAGATATTGTATCCGACCTCAAAAAAGAGAACTCAAATTTAAAATATTACTGCGAT 406
consensus_5859#1      GTCGCAGATATTGTATCCGACCTCAAAAAAGAGAACTCAAATTTAAAATATTACTGCGAT 396
                      ************************************************************

consensus_5859#0      CCCGTTCTAGGTGATAATGGAAAGCTTTATGTCCCACCTGAACTCGTCCAGATATACCAA 466
consensus_5859#1      CCCGTTCTAGGTGATAATGGAAAGCTTTATGTCCCACCTGAACTCGTCCAGATATACCAA 456
                      ************************************************************

consensus_5859#0      GAAAGAATACTCCCTTTATCAGATGTCATTTTCCCAAACCAATTCGAAGCAGATATACTA 526
consensus_5859#1      GAAAGAATACT------------------------------------------------- 467
                      ***********                                                 

consensus_5859#0      AGTGGTATACCAATAACAGATGAAAAGTCTGCTTTAAATTGTATCAACTATTTACATAAA 586
consensus_5859#1      ------------------------------------------------------------
                                                                                  

consensus_5859#0      AAATATCATATTCCAACTGTAATTATTACAAGTACTAATATA 628
consensus_5859#1      ------------------------------------------