cluster # 5865

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Schistosoma mansoni
cluster # 5865 cluster # 5865 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5865#0 length = 619 sequences # 2

consensus_5865#1 length = 309 sequences # 1

consensusID : consensus_5865#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 619
fasta sequence

                              [AATGGAACGATTAAACGAGTATCTAAGAGAAACTGAAAAAATTCGTTCAATGTATAATACAGAATTAAAACAATTAAGACATTTAGTTGATGAATGTGAACGTGAAAAAGCGGATAGTTTAGCTAAAATAGCACATTTACAACAAACTATAAGAAATAAACAAGATCAAATTAATCAATTAAATCAAAATAATCAACGTTTAGCAAAACAACTTGATGATGCTTTAAAAGAATCTAGTATTAAAGATGCTGATAAACTTCAATTAGAACGTCATATTAAACAAGCCGAAGAAGAAGTACATCGATGGTGTACAACAGCTGAACAACAAAAACAAGCTAATAGTCAATTGCATAAAAACTTAGATGAAGAAACAGCTAGTCGTATGACATGTCAATCAGAAATGCAAACATTAAAAGAAGAAATGGAATTTTATCGTCGTGTACATCAACAAGAAATTGAAGAATTACGTTCAATGAATAATAATGTTAATGATGATCAAGATGTTGAACATTGGCGTCAATTAATGCAAAAAACAATTCGTGATATTAAATTAGAATATGATAATCGATTAGATCGTATTCGTGAAGGGATGGAACAAAGNTATTTAAACAGATTGGAT]

[+] EMBL CD095485             [AATGGAACGATTAAACGAGTATCTAAGAGAAACTGAAAAAATTCGTTCAATGTATAATACAGAATTAAAACAATTAAGACATTTAGTTGATGAATGTGAACGTGAAAAAGCGGATAGTTTAGCTAAAATAGCACATTTACAACAAACTATAAGAAATAAACAAGATCAAATTAATCAATTAAATCAAAATAATCAACGTTTAGCAAAACAACTTGATGATGCTTTAAAAGAATCTAGTATTAAAGATGCTGATAAACTTCAATTAGAACGTCATATTAAACAAGCCGAAGAAGAAGTACATCGATGGTGTACAACAGCTGAACAACAAAAACAAGCTAATAGTCAATTGCATAAAAACTTAGATGAAGAAACAGCTAGTCGTATGACATGTCAATCAGAAATGCAAACATTAAAAGAAGAAATGGAATTTTATCGTCGTGTACATCAACAAGAAATTGAAGAATTACGTTCAATGAATAATAATGTTAATGATGATCAAGATGTTGAACATTGGCGTCAATTAATGCAAAAAACAATTCGTGATATTAAATTAGAATATGATAATCGATTAGATCGTATTCGTGAAGGGATGGAACAAAGNTATTTAAACAGATTGGAT]
[+] EMBL CD095495             [ ATGGAACGATCAATCGAGTATCTAAGAGAAACTGAAAAAATTCGTTCAATGTATAATACAGAATTAAAACAATTAAGACATTTAGTTGATGAATGTGAACGTGAAAAAGCGGATAGTTTAGCTAAAATAGCACATTTACAACAAACTATAAGAAATAAACAAGATCAAATTAATCAATTAAATCAAAATAATCAACGTTTAGCAAAACAACTTGATGATGCTTTAAAAGAATCTAGTATTAAAGATGCTGATAAACTTCAATTAGAACGTCATATTAAACAAGCCGAAGAAGAAGTACATCGATGGTGTACAACAGCTGAACAACAAAAACAAGCTAATAGTCAATTGCATAAAAACTTAGATGAAGAAACAGCTAGTCGTATGACATGTCAATCAGAAATGCAAACATTAAAAGAAGAAATGGAATTTTATCGTCGTGTACATCAACAAGAAATTGAAGAATTACGTTCAATGAATAATAATGTTAATGATGATCAAGATGTTGAACATTGGCGTCAATTAATGCANAAAACAATTCGTGATATTAAATTAGAATATGATAATCGATTAG                                               ]




>consensus_5865#0
AATGGAACGATTAAACGAGTATCTAAGAGAAACTGAAAAAATTCGTTCAATGTATAATAC
AGAATTAAAACAATTAAGACATTTAGTTGATGAATGTGAACGTGAAAAAGCGGATAGTTT
AGCTAAAATAGCACATTTACAACAAACTATAAGAAATAAACAAGATCAAATTAATCAATT
AAATCAAAATAATCAACGTTTAGCAAAACAACTTGATGATGCTTTAAAAGAATCTAGTAT
TAAAGATGCTGATAAACTTCAATTAGAACGTCATATTAAACAAGCCGAAGAAGAAGTACA
TCGATGGTGTACAACAGCTGAACAACAAAAACAAGCTAATAGTCAATTGCATAAAAACTT
AGATGAAGAAACAGCTAGTCGTATGACATGTCAATCAGAAATGCAAACATTAAAAGAAGA
AATGGAATTTTATCGTCGTGTACATCAACAAGAAATTGAAGAATTACGTTCAATGAATAA
TAATGTTAATGATGATCAAGATGTTGAACATTGGCGTCAATTAATGCAAAAAACAATTCG
TGATATTAAATTAGAATATGATAATCGATTAGATCGTATTCGTGAAGGGATGGAACAAAG
NTATTTAAACAGATTGGAT

consensusID : consensus_5865#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence

                              [CGGGCCAGCAAAAAGAAAATTGGAATTTTATCGTCGTGTACATCAACAAGAAATTGAAGAATTACGTTCAATGAATAATAATGTTAATGATGATCAAGATGTTGAACATTGGCGTCAATTAATGCAAAAAACAATTCGTGATATTAAATTAGAATATGAAAATCGATTAGATCGTATTCGTGAAGAGATGGAACAAAGTTATTTAACAAGATTGGATGAATTAAATAGCCAAGATTCATCACAACGTAATGAATTTAATAGATTACAAGAAGAAATTCCAAACTTAAAGTGCTTTAGAAGGAACAAGAG]

[+] EMBL AI882653             [CGGGCCAGCAAAAAGAAAATTGGAATTTTATCGTCGTGTACATCAACAAGAAATTGAAGAATTACGTTCAATGAATAATAATGTTAATGATGATCAAGATGTTGAACATTGGCGTCAATTAATGCAAAAAACAATTCGTGATATTAAATTAGAATATGAAAATCGATTAGATCGTATTCGTGAAGAGATGGAACAAAGTTATTTAACAAGATTGGATGAATTAAATAGCCAAGATTCATCACAACGTAATGAATTTAATAGATTACAAGAAGAAATTCCAAACTTAAAGTGCTTTAGAAGGAACAAGAG]




>consensus_5865#1
CGGGCCAGCAAAAAGAAAATTGGAATTTTATCGTCGTGTACATCAACAAGAAATTGAAGA
ATTACGTTCAATGAATAATAATGTTAATGATGATCAAGATGTTGAACATTGGCGTCAATT
AATGCAAAAAACAATTCGTGATATTAAATTAGAATATGAAAATCGATTAGATCGTATTCG
TGAAGAGATGGAACAAAGTTATTTAACAAGATTGGATGAATTAAATAGCCAAGATTCATC
ACAACGTAATGAATTTAATAGATTACAAGAAGAAATTCCAAACTTAAAGTGCTTTAGAAG
GAACAAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5865#0      AATGGAACGATTAAACGAGTATCTAAGAGAAACTGAAAAAATTCGTTCAATGTATAATAC 60
consensus_5865#1      ------------------------------------------------------------
                                                                                  

consensus_5865#0      AGAATTAAAACAATTAAGACATTTAGTTGATGAATGTGAACGTGAAAAAGCGGATAGTTT 120
consensus_5865#1      ------------------------------------------------------------
                                                                                  

consensus_5865#0      AGCTAAAATAGCACATTTACAACAAACTATAAGAAATAAACAAGATCAAATTAATCAATT 180
consensus_5865#1      ------------------------------------------------------------
                                                                                  

consensus_5865#0      AAATCAAAATAATCAACGTTTAGCAAAACAACTTGATGATGCTTTAAAAGAATCTAGTAT 240
consensus_5865#1      ------------------------------------------------------------
                                                                                  

consensus_5865#0      TAAAGATGCTGATAAACTTCAATTAGAACGTCATATTAAACAAGCCGAAGAAGAAGTACA 300
consensus_5865#1      ------------------------------------------------------------
                                                                                  

consensus_5865#0      TCGATGGTGTACAACAGCTGAACAACAAAAACAAGCTAATAGTCAATTGCATAAAAACTT 360
consensus_5865#1      ------------------------------------------------------------
                                                                                  

consensus_5865#0      AGATGAAGAAACAGCTAGTCGTATGACATGTCAATCAGAAATGCAAACATTAAAAGAAGA 420
consensus_5865#1      ------------------------------------------CGGGCCAGCAAAAAGAAA 18
                                                                     **  ****  * *

consensus_5865#0      AATGGAATTTTATCGTCGTGTACATCAACAAGAAATTGAAGAATTACGTTCAATGAATAA 480
consensus_5865#1      ATTGGAATTTTATCGTCGTGTACATCAACAAGAAATTGAAGAATTACGTTCAATGAATAA 78
                      * **********************************************************

consensus_5865#0      TAATGTTAATGATGATCAAGATGTTGAACATTGGCGTCAATTAATGCAAAAAACAATTCG 540
consensus_5865#1      TAATGTTAATGATGATCAAGATGTTGAACATTGGCGTCAATTAATGCAAAAAACAATTCG 138
                      ************************************************************

consensus_5865#0      TGATATTAAATTAGAATATGATAATCGATTAGATCGTATTCGTGAAGGGATGGAACAAAG 600
consensus_5865#1      TGATATTAAATTAGAATATGAAAATCGATTAGATCGTATTCGTGAAGAGATGGAACAAAG 198
                      ********************* ************************* ************

consensus_5865#0      NTATTTAAACAGATTGGAT----------------------------------------- 619
consensus_5865#1      TTATTTAACAAGATTGGATGAATTAAATAGCCAAGATTCATCACAACGTAATGAATTTAA 258
                       *******  *********                                         

consensus_5865#0      ---------------------------------------------------
consensus_5865#1      TAGATTACAAGAAGAAATTCCAAACTTAAAGTGCTTTAGAAGGAACAAGAG 309