These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5866#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 422 fasta sequence [CTGTGGGCATTTTCTTCTTCATCGCCGGAGTATAACAACAGCTCTCCTGAAGTTAATCTTTTTTGTCCATTTTGCGTCTAAGCACCTCCAGGCTGTATCTTTTCATTTCGACAGCAACTTGGATGGCTCTCTCGGTCTCTCACATTGTACGAACGTTCCATGTACCTAGATAAATTGTTGCTCTGGTTGTTAGGAGGGGCATCAGCCTCGTGACTTCCGAAGGAACTAAGCTTTCACATGAGGCGTCATAACTATTCTAAATGAAGACCTTCTAACTCCCAGGGGGAAGTTTAAATGGTTTGAATGATTTTTTCTGGTTAGAGTCTTTTTAGCGAGTTAGTTTTTCTATGGGATGTGGTCACTAACCCCATGCCCAACCCTCCTCCTTCATCCGCGCTTGGGATTTGCAGTAACCCCAAAAG] [+] EMBL CD095483 [CTGTGGGCATTTTCTTCTTCATCGCCGGAGTATAACAACAGCTCTCCTGAAGTTAATCTTTTTTGTCCATTTTGCGTCTAAGCACCTCCAGGCTGTATCTTTTCATTTCGACAGCAACTTGGATGGCTCTCTCGGTCTCTCACATTGTACGAACGTTCCATGTACCTAGATAAATTGTTGCTCTGGTTGTTAGGAGGGGCATCAGCCTCGTGACTTCCGAAGGAACTAAGCTTTCACATGAGGCGTCATAACTATTCTAAATGAAGACCTTCTAACTCCCAGGGGGAAGTTTAAATGGTTTGAATGATTTTTTCTGGTTAGAGTCTTTTTAGCGAGTTAGTTTTTCTATGGGATGTGGTCACTAACCCCATGCCCAACCCTCCTCCTTCATCCGCGCTTGGGATTTGCAGTAACCCCAAAA ] [-] EMBL CD095437 [ CGGTCTCTCACATTGTACGAACGTTCCATGTACCTAGATAAATTGTTGCTCTGGTTGTTAGGAGGGGCATCAGCCTCGTGACTTCCGAAGGAACTAAGCTTTCACATGAGGCGTCATAACTATTCTAAATGAAGACCTTCTAACTCCCAGGGGGAAGTTTAAATGGTTTGAATGATTTTTTCTGGTTAGAGTCTTTTTAGCGAGTTAGTTTTTCTATGGGATGTGGTCACTAACCCCATGCCCAACCCTCCTCCTTCATCCGCGCTTGGGATTTGCAGTAACCCCAGAAG] consensusID : consensus_5866#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [CTGTGGGCATTTTCTTCTTCATCGCCGGAGTATAACAACAGCTCTCCTGAAGTTAATCTTTTTTGTCCATTTTGCGTCTAAGCACCTCCAGGCTGTATCTTTTCATTTCGACAGCAACTTGGATGGCTCTCTCGGTCTCTCACATTGTACGAACGTCCATGTACCTAGATAAATTGTTGCTCTGGTGGTTAGAAGGGCCATAACCTTCTGACTTTCGAAGGAACTTAGCTTTCACATGAAGGCGTCTTACCTATTCTAATTAGAAACTTTCTAACTCCAAGGGGGAAGTTAATGGGGTGAGAGGATTTTTTGGGTAGAGACTTTTTTTAGCGAGTAAGTTTTTCTATGGGATGGGGACATTAACCCTATGCCCAACCCTCCTCTTTTATCCGCGCTGGAGATTCGCAGAACCCCAAGAG] [+] EMBL CD095455 [CTGTGGGCATTTTCTTCTTCATCGCCGGAGTATAACAACAGCTCTCCTGAAGTTAATCTTTTTTGTCCATTTTGCGTCTAAGCACCTCCAGGCTGTATCTTTTCATTTCGACAGCAACTTGGATGGCTCTCTCGGTCTCTCACATTGTACGAACGTCCATGTACCTAGATAAATTGTTGCTCTGGTGGTTAGAAGGGCCATAACCTTCTGACTTTCGAAGGAACTTAGCTTTCACATGAAGGCGTCTTACCTATTCTAATTAGAAACTTTCTAACTCCAAGGGGGAAGTTAATGGGGTGAGAGGATTTTTTGGGTAGAGACTTTTTTTAGCGAGTAAGTTTTTCTATGGGATGGGGACATTAACCCTATGCCCAACCCTCCTCTTTTATCCGCGCTGGAGATTCGCAGAACCCCAAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5866#0 CTGTGGGCATTTTCTTCTTCATCGCCGGAGTATAACAACAGCTCTCCTGAAGTTAATCTT 60 consensus_5866#1 CTGTGGGCATTTTCTTCTTCATCGCCGGAGTATAACAACAGCTCTCCTGAAGTTAATCTT 60 ************************************************************ consensus_5866#0 TTTTGTCCATTTTGCGTCTAAGCACCTCCAGGCTGTATCTTTTCATTTCGACAGCAACTT 120 consensus_5866#1 TTTTGTCCATTTTGCGTCTAAGCACCTCCAGGCTGTATCTTTTCATTTCGACAGCAACTT 120 ************************************************************ consensus_5866#0 GGATGGCTCTCTCGGTCTCTCACATTGTACGAACGTTCCATGTACCTAGATAAATTGTTG 180 consensus_5866#1 GGATGGCTCTCTCGGTCTCTCACATTGTACGAACGT-CCATGTACCTAGATAAATTGTTG 179 ************************************ *********************** consensus_5866#0 CTCTGGTTGTTAGGAGGGGCATCAGCCTCGTGACTTCCGAAGGAACTAAGCTTTCACATG 240 consensus_5866#1 CTCTGGTGGTTAGAAGGGCCAT-AACCTTCTGACTTTCGAAGGAACTTAGCTTTCACATG 238 ******* ***** **** *** * *** ****** ********** ************ consensus_5866#0 A-GGCGTCATAACTATTCTAAATGAAGACCTTCTAACTCCCAGGGGGAAGTTTAAATGGT 299 consensus_5866#1 AAGGCGTCTTACCTATTCTAATTAGAAACTTTCTAACTCCAAGGGGGAAGTT--AATGGG 296 * ****** ** ********* * * ** ********** *********** ***** consensus_5866#0 TTGAATGATTTTTTCTGGTT-AGAGTCTTTTTAGCGAGTTAGTTTTTCTATGGGATGTGG 358 consensus_5866#1 GTGAGAGGATTTTTTGGGTAGAGACTTTTTTTAGCGAGTAAGTTTTTCTATGGGATGGGG 356 *** * ***** *** *** * ************ ***************** ** consensus_5866#0 TCACTAACCCCATGCCCAACCCTCCTCCTTCATCCGCGCTTGGGATTTGCAGTAACCCCA 418 consensus_5866#1 ACATTAACCCTATGCCCAACCCTCCTCTTTTATCCGCGCTGGAGATTCGCAG-AACCCCA 415 ** ****** **************** ** ********* * **** **** ******* consensus_5866#0 AAAG 422 consensus_5866#1 AGAG 419 * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||