cluster # 5868

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Schistosoma mansoni
cluster # 5868 cluster # 5868 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5868#0 length = 289 sequences # 1

consensus_5868#1 length = 282 sequences # 2

consensusID : consensus_5868#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence

                              [GCTTCCAGTATCACGGGGGTCCAGGGCTCGGGAGAATTTCACGTGTCAGGATGCGGATCCGTCCAACTGAGGAGTCCTAAATAGGACGACACGCGCGTCTTGGATTCCACTTCTAGACACTATCCGCCTTTGCTTACAAGGTCTCAATATTGTCTTCAATGGCATTTAGACGATGAAACATTATGTGACTTATTTATTAAGTACTTAGTTGAAAGATAAGGATCCTTTTATTAATGATTGCTAATAATATCAGACTATAGAAACTAAACAATAGTTGGTAATCAGCTTC]

[+] EMBL CD177780             [GCTTCCAGTATCACGGGGGTCCAGGGCTCGGGAGAATTTCACGTGTCAGGATGCGGATCCGTCCAACTGAGGAGTCCTAAATAGGACGACACGCGCGTCTTGGATTCCACTTCTAGACACTATCCGCCTTTGCTTACAAGGTCTCAATATTGTCTTCAATGGCATTTAGACGATGAAACATTATGTGACTTATTTATTAAGTACTTAGTTGAAAGATAAGGATCCTTTTATTAATGATTGCTAATAATATCAGACTATAGAAACTAAACAATAGTTGGTAATCAGCTTC]




>consensus_5868#0
GCTTCCAGTATCACGGGGGTCCAGGGCTCGGGAGAATTTCACGTGTCAGGATGCGGATCC
GTCCAACTGAGGAGTCCTAAATAGGACGACACGCGCGTCTTGGATTCCACTTCTAGACAC
TATCCGCCTTTGCTTACAAGGTCTCAATATTGTCTTCAATGGCATTTAGACGATGAAACA
TTATGTGACTTATTTATTAAGTACTTAGTTGAAAGATAAGGATCCTTTTATTAATGATTG
CTAATAATATCAGACTATAGAAACTAAACAATAGTTGGTAATCAGCTTC

consensusID : consensus_5868#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 282
fasta sequence

                              [GCGATGCCGTTTGAAGCGAATAATACTGGGTTCGAGTTCCAGGGTGAATATCAACTGTGAGATGCAGATACATCCAACTGATGAGTTCTAAATAGGACGAAACGCGCGTCTTGGATTCCACTTCTAGTCACTATCCGTCTTTGCTTACAAGGTCTTAATATTGTCTTCAATGGCATTTAGACGATGAAACATTATGTGACTTATTTATTAAGTACTTAGTTGAAAGATAAGGATCCTTTTATTAATGATTGCTAATAATATCAGACTATAGAAACTANACAA]

[+] EMBL CD181520             [GCGATGCCGTTTGAAGCGAATAATACTGGGTTCGAGTTCCAGGGTGAATATCAACTGTGAGATGCAGATACATCCAACTGATGAGTTCTAAATAGGACGAAACGCGCGTCTTGGATTCCACTTCTAGTCACTATCCGTCTTTGCTTACAAGGTCTTAATATTGTCTTCAATGGCATTTAGACGATGAAACATTATGTGACTTATTTATTAAGTACTTAGTTGAAAGATAAGGATCCTTTTATTAATGATTGCTAATAATATCAGACTATAGAAACTANACAA]
[+] EMBL CD181441             [GCGATGCCGTTTGAAGCGAATAATACTGGGTTCGAGTTCCAGGGTGAATATCAACTGTGAGATGCAGATACATCCAACTGATGAGTTCTAAATAGGACGAAACGCGCGTCTTGGATTCCACTTCTAGTCACTATCCGTCTTTGCTTACAAGGTCTTAATATTGTCTTCAATGGCATTTAGACGATGAAACATTATGTGACTTATTTATTAAGTACTTAGTTGAAAGATAAGGATCCTTTTATTAATGATTGCTAATAATATCAGACTATAGAAACTAAACAA]




>consensus_5868#1
GCGATGCCGTTTGAAGCGAATAATACTGGGTTCGAGTTCCAGGGTGAATATCAACTGTGA
GATGCAGATACATCCAACTGATGAGTTCTAAATAGGACGAAACGCGCGTCTTGGATTCCA
CTTCTAGTCACTATCCGTCTTTGCTTACAAGGTCTTAATATTGTCTTCAATGGCATTTAG
ACGATGAAACATTATGTGACTTATTTATTAAGTACTTAGTTGAAAGATAAGGATCCTTTT
ATTAATGATTGCTAATAATATCAGACTATAGAAACTANACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5868#0      ------------GCTTCCAGTATCACGGGGGTCCAGGGCTCGGGAGAATTTCACGTGTCA 48
consensus_5868#1      GCGATGCCGTTTGAAGCGAATAATACTGGGTTCGAGTTCCAGGGTGAATATCAACTGTGA 60
                                  *   * * **  ** *** ** **  *  *** **** ***  *** *

consensus_5868#0      GGATGCGGATCCGTCCAACTGAGGAGTCCTAAATAGGACGACACGCGCGTCTTGGATTCC 108
consensus_5868#1      G-ATGCAGATACATCCAACTGATGAGTTCTAAATAGGACGAAACGCGCGTCTTGGATTCC 119
                      * **** *** * ********* **** ************* ******************

consensus_5868#0      ACTTCTAGACACTATCCGCCTTTGCTTACAAGGTCTCAATATTGTCTTCAATGGCATTTA 168
consensus_5868#1      ACTTCTAGTCACTATCCGTCTTTGCTTACAAGGTCTTAATATTGTCTTCAATGGCATTTA 179
                      ******** ********* ***************** ***********************

consensus_5868#0      GACGATGAAACATTATGTGACTTATTTATTAAGTACTTAGTTGAAAGATAAGGATCCTTT 228
consensus_5868#1      GACGATGAAACATTATGTGACTTATTTATTAAGTACTTAGTTGAAAGATAAGGATCCTTT 239
                      ************************************************************

consensus_5868#0      TATTAATGATTGCTAATAATATCAGACTATAGAAACTAAACAATAGTTGGTAATCAGCTT 288
consensus_5868#1      TATTAATGATTGCTAATAATATCAGACTATAGAAACTANACAA----------------- 282
                      ************************************** ****                 

consensus_5868#0      C 289
consensus_5868#1      -