These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5874#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 946 fasta sequence [AAAAACATGTTTATTATGTTACATGAAATCGTAGTTTTTAATAATCTGGTAATTAAACGAGATAACTAATTACGTTTACATGTACAGCTATTAGTGTGCCTACCATGTTGCCATTAAGTCACATAGTAAAATCTAAATAATGTTTCTAATATTATAATAGCAATTTATTAGATTTCAACACTTCAAATGAAACTTGGCTGCTGTTACTGGTTTGTGTTTTATTGAGTGTGTTGTTTATGAAGTATTGTAAGTTTTGAACGATCGTTAACCAATCCATCATCATTACAGTGTACAATAACAATGAAGCTAAACAGTAATCATCACCGGCAATTCGAAAGTCATGTCTACCAAATGTTGCCTGTCCTACAATCAGCATTAACGTTAGTCTAAAATATTGTGATACAAATACCGCAACTATGATAGCAATAAGCTCTGTGGTGCTAATCACGAGAAACCATAAATTTGTATATAATAAACGTATTCGAATAGATGCTCCTAATAATGTAAATGCTACAAACGACAACAAAGTAACTGCCCATGCCATAATTTTCCATTCAATTCGCAAACTTGTAAATGGAAGAAGC-ACTGTCAGTGAAGTAAGCATCGTATATAACATCAAAAGGACAATATTTACTGGACACTTTCTTCGCACTGTTGTTGAAACCAAAAGAAACACTAATATCCCATCATTTATTATTGCCAGCACCGTCTCAACAGGTATAAGAACTAAACTTATGTCCAGTTTACCATTTATTCGTCAAACCAAGTGTTATTCCAATTGATAGGACGATTTGTATTCCAAGAAGAACCAGTACTTGTTTCCAATATCTTGGATCGAATGGAAAAATTTCCTTTTCCAATAGCTTACGACTTATTTTATTCTCTGTGTTGAGCATAAGTTGTAAAAATATGCAAATCCAGATAAACGACTTATTACTGTTACCTC] [+] EMBL CD076642 [AAAAACATGTTTATTATGTTACATGAAATCGTAGTTTTTAATAATCTGGTAATTAAACGAGATAACTAATTACGTTTACATGTACAGCTATTAGTGTGCCTACCATGTTGCCATTAAGTCACATAGTAAAATCTAAATAATGTTTCTAATATTATAATAGCAATTTATTAGATTTCAACACTTCAAATGAAACTTGGCTGCTGTTACTGGTTTGTGTTTTATTGAGTGTGTTGTTTATGAAGTATTGTAAGTTTTGAACGATCGTTAACCAATCCATCATCATTACAGTGTACAATAACAATGAAGCTAAACAGTAATCATCACCGGCAATTCGAAAGTCATGTCTACCAAATGTTGCCTGTCCTACAATCAGCATTAACGTTAGTCTAAAATATTGTGATACAAATACCGCAACTATGATAGCAATAAGCTCTGTGGTGCTAATCACGAGAAACCATAAATTTGTATATAATAAACGTATTCGAATAGATGCTCCTAATAATGTAAATGCTACAAACGACAACAAAGTAACTGCCCATGCCATAATTTTCCATTCAATTCGCAAACTTGTAAATGGAAGAAGC ACTGTCAGTGAAGTAAGC ] [-] EMBL CD083069 [ CTATGATAGCAATAAGCTCTGTGGTGCTAATCACGAGAAACCATAAATTTGTATATAATAAACGTATTCGAATAGATGCTCCTAATAATGTAAATGCTACAAACGACAACAAAGTAACTGCCCATGCCATAATTTTCCATTCAATTCGCAAACTTGTAAATGGAAG AGCAACTGTCAGTGAAGTAAGCATCGTATATAACATCAAAAGGACAATATTTACTGGACACTTTCTTCGCACTGTTGTTGAAACCAAAAGAAACACTAATATCCCATCATTTATTATTGCCAGCACCGTCTCAACAGGTATAAGAACTAAACTTATGTCCAGTTTACCATTTATTCGTCAAACCAAGTGTTATTCCAATTGATAGGACGATTTGTATTCCAAGAAGAACCAGTACTTGTTTCCAATATCTTGGATCGAATGGAAAAATTTCCTTTTCCAATAGCTTACGACTTATTTTATTCTCTGTGTTGAGCATAAGTTGTAAAAATATGCAAATCCAGATAAACGACTTATTACTGTTACCTC] consensusID : consensus_5874#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence [TTTATTCTGTCAATAGATGGTGAATGGAACTTCATGTATTGGATTACCGTCAAACCAAGTGTTATTCCAATTGATAGGACGATTTGTATTCCAAGAAGAACCAGTACTTGTTTCCAATATCTTGGATCGAATGGAAAAATTTCCTTTTCCAATAGCTTACGACTTATTTTATTCTCTGTGTTGAGCATAAGTTGTGAAAAATATGCAAATCCAGATAAACGACTTATTACTGTTACCTCGTTTTGTTCATCTATTGATAATCCTCGTGCCGAATTCTTGGCCG] [-] EMBL CD077557 [TTTATTCTGTCAATAGATGGTGAATGGAACTTCATGTATTGGATTACCGTCAAACCAAGTGTTATTCCAATTGATAGGACGATTTGTATTCCAAGAAGAACCAGTACTTGTTTCCAATATCTTGGATCGAATGGAAAAATTTCCTTTTCCAATAGCTTACGACTTATTTTATTCTCTGTGTTGAGCATAAGTTGTGAAAAATATGCAAATCCAGATAAACGACTTATTACTGTTACCTCGTTTTGTTCATCTATTGATAATCCTCGTGCCGAATTCTTGGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5874#0 AAAAACATGTTTATTATGTTACATGAAATCGTAGTTTTTAATAATCTGGTAATTAAACGA 60 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 GATAACTAATTACGTTTACATGTACAGCTATTAGTGTGCCTACCATGTTGCCATTAAGTC 120 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 ACATAGTAAAATCTAAATAATGTTTCTAATATTATAATAGCAATTTATTAGATTTCAACA 180 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 CTTCAAATGAAACTTGGCTGCTGTTACTGGTTTGTGTTTTATTGAGTGTGTTGTTTATGA 240 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 AGTATTGTAAGTTTTGAACGATCGTTAACCAATCCATCATCATTACAGTGTACAATAACA 300 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 ATGAAGCTAAACAGTAATCATCACCGGCAATTCGAAAGTCATGTCTACCAAATGTTGCCT 360 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 GTCCTACAATCAGCATTAACGTTAGTCTAAAATATTGTGATACAAATACCGCAACTATGA 420 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 TAGCAATAAGCTCTGTGGTGCTAATCACGAGAAACCATAAATTTGTATATAATAAACGTA 480 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 TTCGAATAGATGCTCCTAATAATGTAAATGCTACAAACGACAACAAAGTAACTGCCCATG 540 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 CCATAATTTTCCATTCAATTCGCAAACTTGTAAATGGAAGAAGCACTGTCAGTGAAGTAA 600 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 GCATCGTATATAACATCAAAAGGACAATATTTACTGGACACTTTCTTCGCACTGTTGTTG 660 consensus_5874#1 ------------------------------------------------------------ consensus_5874#0 AAACCAAAAGAAACACTAATATCCCATCATTTATTATTGCCAGCACCGTCTCAACAGGTA 720 consensus_5874#1 -----------------------------------------TTTATTCTGTCAATAGATG 19 * * **** ** * consensus_5874#0 TAAGAACTAAACTTATGTCCAGTTTACCATTTATTCGTCAAACCAAGTGTTATTCCAATT 780 consensus_5874#1 -GTGAATGGAACTTC------ATGTATTGGATTACCGTCAAACCAAGTGTTATTCCAATT 72 *** ***** * ** * ************************* consensus_5874#0 GATAGGACGATTTGTATTCCAAGAAGAACCAGTACTTGTTTCCAATATCTTGGATCGAAT 840 consensus_5874#1 GATAGGACGATTTGTATTCCAAGAAGAACCAGTACTTGTTTCCAATATCTTGGATCGAAT 132 ************************************************************ consensus_5874#0 GGAAAAATTTCCTTTTCCAATAGCTTACGACTTATTTTATTCTCTGTGTTGAGCATAAGT 900 consensus_5874#1 GGAAAAATTTCCTTTTCCAATAGCTTACGACTTATTTTATTCTCTGTGTTGAGCATAAGT 192 ************************************************************ consensus_5874#0 TGT-AAAAATATGCAAATCCAGATAAACGACTTATTACTGTTACCTC------------- 946 consensus_5874#1 TGTGAAAAATATGCAAATCCAGATAAACGACTTATTACTGTTACCTCGTTTTGTTCATCT 252 *** ******************************************* consensus_5874#0 ------------------------------- consensus_5874#1 ATTGATAATCCTCGTGCCGAATTCTTGGCCG 283 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||