cluster # 5879

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Schistosoma mansoni
cluster # 5879 cluster # 5879 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5879#0 length = 904 sequences # 2

consensus_5879#1 length = 326 sequences # 1

consensusID : consensus_5879#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 904
fasta sequence

                              [AGCCATAATTCGGCACGACGGCCTAAATATGAGGATAATTTAGCATGTATAAAAGAATTATTCCCTCCAAGTAATAATTATTTAGTTGGTTATCATCCACATGGAATATTTGGTATTGGTGCTTTTATTAATTTCTTAACGGAAGCTAATCAATTCTCCGAAAAATTTCCAGGAATTACACCATGGTTAACAACATTGGAAATTAATTTTAAAGCACCATTTTATCGTGATCTCCTTTTGTCTTTTAATCTTGTAGCGGCAACATACAAAGGACTTTCATACCTTCTTGATCCTCAACAATGTGGAAATACAGGAAATTTCGTTGTCGTTCTTTTGGGTGGTGCTCCTGAAGCATTAGATTCACGTCCTGGAAAATATGTCTTCCACACTAATCGACGATACGGCTTTTTCAAGTTAGCATTAATGACTGGGTCGCACTTAGTACCGTGTGTATCGTTTGGCGAACCGAATATGTTTAAACAAGTGTACAATCCTGAAGGGAGTTGCATACGATACTTCCAAAATCGATTTACGGAAATGGCAACATTCTCACCTCCTTTCTTTTATGCTCGATTTTTACTGCCTTATCGGACAGATGTAAACACAGTCATTGGACGGCCAATACCATGTGAAAAAAACCCAAATCCAACAAGAGAACAAATATCAGTGCTGAAAGAATTATACCTAGAAGAACTTCGAAATCTTTACAATAAATACAAACCAATCTATGATCCAGATGGAGATCTAATGTTTGTTTGAAGCTGAGATAATCTTGTTTTCGCAGTTTATTCTATTAGCCAGAAAAAACAATAAACATTACCATCTANGACTNTATGATTCTGATTATTTTATTTATGACAATTATTTCTCAGTTTCAAGATGTACATTCATTTGAAAAGATTTT]

[+] EMBL CD081688             [AGCCATAATTCGGCACGACGGCCTAAATATGAGGATAATTTAGCATGTATAAAAGAATTATTCCCTCCAAGTAATAATTATTTAGTTGGTTATCATCCACATGGAATATTTGGTATTGGTGCTTTTATTAATTTCTTAACGGAAGCTAATCAATTCTCCGAAAAATTTCCAGGAATTACACCATGGTTAACAACATTGGAAATTAATTTTAAAGCACCATTTTATCGTGATCTCCTTTTGTCTTTTAATCTTGTAGCGGCAACATACAAAGGACTTTCATACCTTCTTGATCCTCAACAATGTGGAAATACAGGAAATTTCGTTGTCGTTCTTTTGGGTGGTGCTCCTGAAGCATTAGATTCACGTCCTGGAAAATATGTCTTCCACACTAATCGACGATACGGCTTTTTCAAGTTAGCATTAATGACTGGGTCGCACTTAGTACCGTGTGTATCGTTTGGCGAACCGAATATGTTTAAACAAGTGTACAATCCTGAAGGGAGTTGCATACGATACTTCCAAAATCGATTTACGGAAATGGCAACATTCTCACCTCCTTTCTTTTATGCTCGATTTTTACTGCCTTATCGGACAGATGTAAACACAGTCATTGGACGGCCAATACCATGTGAAAAAAACCCAAATCCAACAAGAGAACAAATATCAGTGCTGAAAGAATTATACCTAGAAGAACTTCGAAATCTTTACAATAAATACAAACCAATCTATGATCCAGATGGAGATCTAATGTTTGTTTGAAGCTGAGATAATCTTGTTTTCGCAGTTTATTCTATTAGCCAGAAAAAACAATAAACATTACCATCTANGACTNTATGATTCTGATTATTTTATTTATGACAATTATTTCTCAGTTTCAAGATGTA                    ]
[-] EMBL CD074615             [                                                                                                                                                                                                                                                                      CATACAAAGGACTNTCATACC TCTTGATCCTCAACAATGTGGAAATACAGGAAATTTCGTTGTCGTTCTTTTGGGTGGTGCTCCTGAAGCATTAGATTCACGTCCTGGAAAATATGTCTTCCACACTAATCGACGATACGGCTTTTTCAAGTTAGCATTAATGACTGGGTCGCACTTAGTACCGTGTGTATCGTTTGGTGAACCGAATATGTTTAAACAAGTGTACAATCCTGAAGGGAGTTGCATACGATACTTCCAAAATCGATTTACGGAAATGGCAACATTCTCACCTCCTTTCTTTTATGCTCGATTTTTACTGCCTTATCGGACAGATGTAAACACAGTCATTGGACGGCCAATACCATGTGAAAAAAACCCAAATCCAACAAGAGAACAAATATCAGTGCTGAAAGAATTATACCTAGAAGAACTTCGAAATCTTTACAATAAATACAAACCAATCTATGACCCAGATGGAGATCTAATGTTTGTTTGAAGCTGAGATAATCTTGTTTTCGCAGTTTATTCTATTAGCCAGAAAAAACAATAAACATTACCATCTAGGACTTTATGATTCTGATTATTTTATTTATGACAATTATTTCTCAGTTTCAAGATGTACATTCATTTGAAAAGATTTT]




>consensus_5879#0
AGCCATAATTCGGCACGACGGCCTAAATATGAGGATAATTTAGCATGTATAAAAGAATTA
TTCCCTCCAAGTAATAATTATTTAGTTGGTTATCATCCACATGGAATATTTGGTATTGGT
GCTTTTATTAATTTCTTAACGGAAGCTAATCAATTCTCCGAAAAATTTCCAGGAATTACA
CCATGGTTAACAACATTGGAAATTAATTTTAAAGCACCATTTTATCGTGATCTCCTTTTG
TCTTTTAATCTTGTAGCGGCAACATACAAAGGACTTTCATACCTTCTTGATCCTCAACAA
TGTGGAAATACAGGAAATTTCGTTGTCGTTCTTTTGGGTGGTGCTCCTGAAGCATTAGAT
TCACGTCCTGGAAAATATGTCTTCCACACTAATCGACGATACGGCTTTTTCAAGTTAGCA
TTAATGACTGGGTCGCACTTAGTACCGTGTGTATCGTTTGGCGAACCGAATATGTTTAAA
CAAGTGTACAATCCTGAAGGGAGTTGCATACGATACTTCCAAAATCGATTTACGGAAATG
GCAACATTCTCACCTCCTTTCTTTTATGCTCGATTTTTACTGCCTTATCGGACAGATGTA
AACACAGTCATTGGACGGCCAATACCATGTGAAAAAAACCCAAATCCAACAAGAGAACAA
ATATCAGTGCTGAAAGAATTATACCTAGAAGAACTTCGAAATCTTTACAATAAATACAAA
CCAATCTATGATCCAGATGGAGATCTAATGTTTGTTTGAAGCTGAGATAATCTTGTTTTC
GCAGTTTATTCTATTAGCCAGAAAAAACAATAAACATTACCATCTANGACTNTATGATTC
TGATTATTTTATTTATGACAATTATTTCTCAGTTTCAAGATGTACATTCATTTGAAAAGA
TTTT

consensusID : consensus_5879#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 326
fasta sequence

                              [GAAATAAAGAAGATTATCCTAAATATGAGAATAATTTAGCATGTATAAAAGAATTATTCCCTGCAAGTAATAATTATTTAGTTGGTTATCATTCACATGGAATATTTGGTATTGGTGCTTTTATTAATTTCTTAACGGAAGCTAATCAATTCTCCGAAAAATTTCCAGGAATTACACCATGGTTAACAACATTGGAAATTAATTNTAAAGCACCATTTTATCGTGATCTCCTTTTGTCTTTTAATCTTGTAGCGGCAACATACAAAGGACTTTCATACCTTCTTGATCCTCAACAATGTGGAAATACAGGAAATTTCGTTGTCGTT]

[+] EMBL CD080691             [GAAATAAAGAAGATTATCCTAAATATGAGAATAATTTAGCATGTATAAAAGAATTATTCCCTGCAAGTAATAATTATTTAGTTGGTTATCATTCACATGGAATATTTGGTATTGGTGCTTTTATTAATTTCTTAACGGAAGCTAATCAATTCTCCGAAAAATTTCCAGGAATTACACCATGGTTAACAACATTGGAAATTAATTNTAAAGCACCATTTTATCGTGATCTCCTTTTGTCTTTTAATCTTGTAGCGGCAACATACAAAGGACTTTCATACCTTCTTGATCCTCAACAATGTGGAAATACAGGAAATTTCGTTGTCGTT]




>consensus_5879#1
GAAATAAAGAAGATTATCCTAAATATGAGAATAATTTAGCATGTATAAAAGAATTATTCC
CTGCAAGTAATAATTATTTAGTTGGTTATCATTCACATGGAATATTTGGTATTGGTGCTT
TTATTAATTTCTTAACGGAAGCTAATCAATTCTCCGAAAAATTTCCAGGAATTACACCAT
GGTTAACAACATTGGAAATTAATTNTAAAGCACCATTTTATCGTGATCTCCTTTTGTCTT
TTAATCTTGTAGCGGCAACATACAAAGGACTTTCATACCTTCTTGATCCTCAACAATGTG
GAAATACAGGAAATTTCGTTGTCGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5879#0      AGCCATAATTCGGCACGACGGCCTAAATATGAGGATAATTTAGCATGTATAAAAGAATTA 60
consensus_5879#1      ----GAAATAAAGAAGATTATCCTAAATATGAGAATAATTTAGCATGTATAAAAGAATTA 56
                            ***   * *      ************ **************************

consensus_5879#0      TTCCCTCCAAGTAATAATTATTTAGTTGGTTATCATCCACATGGAATATTTGGTATTGGT 120
consensus_5879#1      TTCCCTGCAAGTAATAATTATTTAGTTGGTTATCATTCACATGGAATATTTGGTATTGGT 116
                      ****** ***************************** ***********************

consensus_5879#0      GCTTTTATTAATTTCTTAACGGAAGCTAATCAATTCTCCGAAAAATTTCCAGGAATTACA 180
consensus_5879#1      GCTTTTATTAATTTCTTAACGGAAGCTAATCAATTCTCCGAAAAATTTCCAGGAATTACA 176
                      ************************************************************

consensus_5879#0      CCATGGTTAACAACATTGGAAATTAATTTTAAAGCACCATTTTATCGTGATCTCCTTTTG 240
consensus_5879#1      CCATGGTTAACAACATTGGAAATTAATTNTAAAGCACCATTTTATCGTGATCTCCTTTTG 236
                      **************************** *******************************

consensus_5879#0      TCTTTTAATCTTGTAGCGGCAACATACAAAGGACTTTCATACCTTCTTGATCCTCAACAA 300
consensus_5879#1      TCTTTTAATCTTGTAGCGGCAACATACAAAGGACTTTCATACCTTCTTGATCCTCAACAA 296
                      ************************************************************

consensus_5879#0      TGTGGAAATACAGGAAATTTCGTTGTCGTTCTTTTGGGTGGTGCTCCTGAAGCATTAGAT 360
consensus_5879#1      TGTGGAAATACAGGAAATTTCGTTGTCGTT------------------------------ 326
                      ******************************                              

consensus_5879#0      TCACGTCCTGGAAAATATGTCTTCCACACTAATCGACGATACGGCTTTTTCAAGTTAGCA 420
consensus_5879#1      ------------------------------------------------------------
                                                                                  

consensus_5879#0      TTAATGACTGGGTCGCACTTAGTACCGTGTGTATCGTTTGGCGAACCGAATATGTTTAAA 480
consensus_5879#1      ------------------------------------------------------------
                                                                                  

consensus_5879#0      CAAGTGTACAATCCTGAAGGGAGTTGCATACGATACTTCCAAAATCGATTTACGGAAATG 540
consensus_5879#1      ------------------------------------------------------------
                                                                                  

consensus_5879#0      GCAACATTCTCACCTCCTTTCTTTTATGCTCGATTTTTACTGCCTTATCGGACAGATGTA 600
consensus_5879#1      ------------------------------------------------------------
                                                                                  

consensus_5879#0      AACACAGTCATTGGACGGCCAATACCATGTGAAAAAAACCCAAATCCAACAAGAGAACAA 660
consensus_5879#1      ------------------------------------------------------------
                                                                                  

consensus_5879#0      ATATCAGTGCTGAAAGAATTATACCTAGAAGAACTTCGAAATCTTTACAATAAATACAAA 720
consensus_5879#1      ------------------------------------------------------------
                                                                                  

consensus_5879#0      CCAATCTATGATCCAGATGGAGATCTAATGTTTGTTTGAAGCTGAGATAATCTTGTTTTC 780
consensus_5879#1      ------------------------------------------------------------
                                                                                  

consensus_5879#0      GCAGTTTATTCTATTAGCCAGAAAAAACAATAAACATTACCATCTANGACTNTATGATTC 840
consensus_5879#1      ------------------------------------------------------------
                                                                                  

consensus_5879#0      TGATTATTTTATTTATGACAATTATTTCTCAGTTTCAAGATGTACATTCATTTGAAAAGA 900
consensus_5879#1      ------------------------------------------------------------
                                                                                  

consensus_5879#0      TTTT 904
consensus_5879#1      ----