cluster # 5884

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Schistosoma mansoni
cluster # 5884 cluster # 5884 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5884#0 length = 866 sequences # 2

consensus_5884#1 length = 360 sequences # 1

consensusID : consensus_5884#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 866
fasta sequence

                              [AGGCCAANAATTCGGCACGAGGCCACGTGATAATTATTATCCAATGGTATCTTCAACCACATTACGAAGTGGGTTTCGTTTGATTCGTGCGAAATCTTACCCAATCACATTGCAATATTTAATATGCCAGTATTTTCTCCACCAGCAACAAAAACAACCATCCCCTCATACCTGTTTCAATTTGACCACTTTAAAATTTCCTGCTGGTCTTCGGGAAATTTTAAAAAACACTCTACCTCACTCACTATTCTTCAATCAAATTCAACAACTATCCTTCAATTATAATGATGTACACAAAGCGTCATCTCTTTTACCTGTTGATTCACCTGATCCTTTCTTATGGATTAGTTTCTCTCCATCTGATTCAAATGATTTAAACAGTAGTACAATGGGTGATGCGGATAAATTTGACATTGAACCATACTCTCCGGAAGAGTTCGATTTTTCTTCGGATGATTTGTTGGATGAACGTGAGAAATCAGTAGACAAAGATGATAGTTCTGATGAAAATCACCTAAACGAGACCAATTTTTGTTCATCTACAACTATTGCAGGCAGTCAGAAAAGGCGTTATCAAGCTGCCATGTCCGCAAATTGTGTGTTAGACAGACTATTTGTTTTGGCTGCANAATCTACCAAAAGTGACGATAAGTCCAGTGAAACAACGTCTCATATGATGCGTAATGTGAACTCTGTTGTTTATGACCATGCACTCTGGGGTGAATTTGACGAATAAG-AAAAAACTATC-AAATCATAACTCTTCAGTGTTTAC-ATCGATCCCT-AATGTC-TCACTG-AAAATGAA-TTG-ATAT-AAATGG-TNACAGNNGTG-CTG-ATATNC-TAAANTTA-TC-TTCG-TTATT-ATACAAACCTTT]

[+] EMBL CD080712             [AGGCCAANAATTCGGCACGAGGCCACGTGATAATTATTATCCAATGGTATCTTCAACCACATTACGAAGTGGGTTTCGTTTGATTCGTGCGAAATCTTACCCAATCACATTGCAATATTTAATATGCCAGTATTTTCTCCACCAGCAACAAAAACAACCATCCCCTCATACCTGTTTCAATTTGACCACTTTAAAATTTCCTGCTGGTCTTCGGGAAATTTTAAAAAACACTCTACCTCACTCACTATTCTTCAATCAAATTCAACAACTATCCTTCAATTATAATGATGTACACAAAGCGTCATCTCTTTTACCTGTTGATTCACCTGATCCTTTCTTATGGATTAGTTTCTCTCCATCTGATTCAAATGATTTAAACAGTAGTACAATGGGTGATGCGGATAAATTTGACATTGAACCATACTCTCCGGAAGAGTTCGATTTTTCTTCGGATGATTTGTTGGATGAACGTGAGAAATCAGTAGACAAAGATGATAGTTCTGATGAAAATCACCTAAACGAGACCAATTTTTGTTCATCTACAACTATTGCAGGCAGTCAGAAAAGGCGTTATCAAGCTGCCATGTCCGCAAATTGTGTGTTAGACAGACTATTTGTTTTGGCTGCANAATCTACCAAAAGTGACGATAAGTCCAGTGAAACAACGTCTCATATGATGCGTAATGTGAACTCTGTTGTTTATGACCATGCACTCTGGGGTGAATTTGACGAATAAG AAAAAACTATC AAATCATAACTCTTCAGTGTTTAC ATCGATCCCT AATGTC TCACTG AAAATGAA TTG ATAT AAATGG TNACAGNNGTG CTG ATATNC TAAANTTA TC TTCG TTATT ATACAAAC    ]
[-] EMBL CD074637             [                                                                                                                                                                                                                                                                  AATTCAACAACTATCCTTCAATTATAATGATGTACACAAAGCGTCATCTCTTTTACCTGTTGATTCACCTGATCCTTTCTTATGGATTAGTTTCTCTCCATCTGATTCAAATGATTTAAACAGTAGTACAATGGGTGATGCGGATAAATTTGACATTGAACCATACTCTCCGGAAGAGTTCGATTTTTCTTCGGATGATTTGTTGGATGAACGTGAGAAATCAGTAGACAAAGATGATAGTTCTGATGAAAATCACCTAAACGAGACCAATTTTTGTTCATCTACAACTATTGCAGGCAGTCAGAAAAGGCGTTATCAAGCTGCCATGTCCGCAAATTGTGTGTTAGACAGACTATTTGTTTTGGCTGCAAAATCTACCAAAAGTGACGATAAGTCCAGTGAAACAACGTCTCATATGATGCGTAATGTGAACTCTGTTGTTTATGACCATGCACTCTGGGGTGAATTTGACGAATAAGAAAAAAACTATCAAAATCATAACTCTTCAGTG TTACAATCGATCCCTAAATGTCTTCACTGAAAAATGAATTTGTATATAAAATGGTTCACAGTGTTGTCTGTATATTCTTAAATTTATTCTTTCGTTTATTAATACAAAACTTT]




>consensus_5884#0
AGGCCAANAATTCGGCACGAGGCCACGTGATAATTATTATCCAATGGTATCTTCAACCAC
ATTACGAAGTGGGTTTCGTTTGATTCGTGCGAAATCTTACCCAATCACATTGCAATATTT
AATATGCCAGTATTTTCTCCACCAGCAACAAAAACAACCATCCCCTCATACCTGTTTCAA
TTTGACCACTTTAAAATTTCCTGCTGGTCTTCGGGAAATTTTAAAAAACACTCTACCTCA
CTCACTATTCTTCAATCAAATTCAACAACTATCCTTCAATTATAATGATGTACACAAAGC
GTCATCTCTTTTACCTGTTGATTCACCTGATCCTTTCTTATGGATTAGTTTCTCTCCATC
TGATTCAAATGATTTAAACAGTAGTACAATGGGTGATGCGGATAAATTTGACATTGAACC
ATACTCTCCGGAAGAGTTCGATTTTTCTTCGGATGATTTGTTGGATGAACGTGAGAAATC
AGTAGACAAAGATGATAGTTCTGATGAAAATCACCTAAACGAGACCAATTTTTGTTCATC
TACAACTATTGCAGGCAGTCAGAAAAGGCGTTATCAAGCTGCCATGTCCGCAAATTGTGT
GTTAGACAGACTATTTGTTTTGGCTGCANAATCTACCAAAAGTGACGATAAGTCCAGTGA
AACAACGTCTCATATGATGCGTAATGTGAACTCTGTTGTTTATGACCATGCACTCTGGGG
TGAATTTGACGAATAAGAAAAAACTATCAAATCATAACTCTTCAGTGTTTACATCGATCC
CTAATGTCTCACTGAAAATGAATTGATATAAATGGTNACAGNNGTGCTGATATNCTAAAN
TTATCTTCGTTATTATACAAACCTTT

consensusID : consensus_5884#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [CCTTGGGATCTTGCGCTTTCAAAAAGGGTAGTATAATTGGCTGTCTTCTCGATTTATGGCATTGTAAGCTTTACTTCTTCGTTGATGGACAATTGAATCCCAATGCTTGTTTCAATCTACCACGTGATAATTATTATCCAATGGTATCTTCAACCACATTACGAAGTGGGTTTCGTTTGATTCGTGCGAAATCTTACCCAATCACATTGCAATATTTAATATGCCAGTATTTTCTCCACCAGCAACAAAAACAACCATCCCCTCATACCTGTTTCAATTTGACCACTTTAAAATTTCCTGCTGGTCTTCGGGAAATTTTAAAAAACACTCTACCTCACTCACTATTCTTCAATCAAATTC]

[-] EMBL CD178984             [CCTTGGGATCTTGCGCTTTCAAAAAGGGTAGTATAATTGGCTGTCTTCTCGATTTATGGCATTGTAAGCTTTACTTCTTCGTTGATGGACAATTGAATCCCAATGCTTGTTTCAATCTACCACGTGATAATTATTATCCAATGGTATCTTCAACCACATTACGAAGTGGGTTTCGTTTGATTCGTGCGAAATCTTACCCAATCACATTGCAATATTTAATATGCCAGTATTTTCTCCACCAGCAACAAAAACAACCATCCCCTCATACCTGTTTCAATTTGACCACTTTAAAATTTCCTGCTGGTCTTCGGGAAATTTTAAAAAACACTCTACCTCACTCACTATTCTTCAATCAAATTC]




>consensus_5884#1
CCTTGGGATCTTGCGCTTTCAAAAAGGGTAGTATAATTGGCTGTCTTCTCGATTTATGGC
ATTGTAAGCTTTACTTCTTCGTTGATGGACAATTGAATCCCAATGCTTGTTTCAATCTAC
CACGTGATAATTATTATCCAATGGTATCTTCAACCACATTACGAAGTGGGTTTCGTTTGA
TTCGTGCGAAATCTTACCCAATCACATTGCAATATTTAATATGCCAGTATTTTCTCCACC
AGCAACAAAAACAACCATCCCCTCATACCTGTTTCAATTTGACCACTTTAAAATTTCCTG
CTGGTCTTCGGGAAATTTTAAAAAACACTCTACCTCACTCACTATTCTTCAATCAAATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5884#0      ------------------------------------------------------------
consensus_5884#1      CCTTGGGATCTTGCGCTTTCAAAAAGGGTAGTATAATTGGCTGTCTTCTCGATTTATGGC 60
                                                                                  

consensus_5884#0      -----------------------------------AGGCCAANAATTCGGCACGAG--GC 23
consensus_5884#1      ATTGTAAGCTTTACTTCTTCGTTGATGGACAATTGAATCCCAATGCTTGTTTCAATCTAC 120
                                                         *  ** *    * *   * *    *

consensus_5884#0      CACGTGATAATTATTATCCAATGGTATCTTCAACCACATTACGAAGTGGGTTTCGTTTGA 83
consensus_5884#1      CACGTGATAATTATTATCCAATGGTATCTTCAACCACATTACGAAGTGGGTTTCGTTTGA 180
                      ************************************************************

consensus_5884#0      TTCGTGCGAAATCTTACCCAATCACATTGCAATATTTAATATGCCAGTATTTTCTCCACC 143
consensus_5884#1      TTCGTGCGAAATCTTACCCAATCACATTGCAATATTTAATATGCCAGTATTTTCTCCACC 240
                      ************************************************************

consensus_5884#0      AGCAACAAAAACAACCATCCCCTCATACCTGTTTCAATTTGACCACTTTAAAATTTCCTG 203
consensus_5884#1      AGCAACAAAAACAACCATCCCCTCATACCTGTTTCAATTTGACCACTTTAAAATTTCCTG 300
                      ************************************************************

consensus_5884#0      CTGGTCTTCGGGAAATTTTAAAAAACACTCTACCTCACTCACTATTCTTCAATCAAATTC 263
consensus_5884#1      CTGGTCTTCGGGAAATTTTAAAAAACACTCTACCTCACTCACTATTCTTCAATCAAATTC 360
                      ************************************************************

consensus_5884#0      AACAACTATCCTTCAATTATAATGATGTACACAAAGCGTCATCTCTTTTACCTGTTGATT 323
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      CACCTGATCCTTTCTTATGGATTAGTTTCTCTCCATCTGATTCAAATGATTTAAACAGTA 383
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      GTACAATGGGTGATGCGGATAAATTTGACATTGAACCATACTCTCCGGAAGAGTTCGATT 443
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      TTTCTTCGGATGATTTGTTGGATGAACGTGAGAAATCAGTAGACAAAGATGATAGTTCTG 503
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      ATGAAAATCACCTAAACGAGACCAATTTTTGTTCATCTACAACTATTGCAGGCAGTCAGA 563
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      AAAGGCGTTATCAAGCTGCCATGTCCGCAAATTGTGTGTTAGACAGACTATTTGTTTTGG 623
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      CTGCANAATCTACCAAAAGTGACGATAAGTCCAGTGAAACAACGTCTCATATGATGCGTA 683
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      ATGTGAACTCTGTTGTTTATGACCATGCACTCTGGGGTGAATTTGACGAATAAGAAAAAA 743
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      CTATCAAATCATAACTCTTCAGTGTTTACATCGATCCCTAATGTCTCACTGAAAATGAAT 803
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      TGATATAAATGGTNACAGNNGTGCTGATATNCTAAANTTATCTTCGTTATTATACAAACC 863
consensus_5884#1      ------------------------------------------------------------
                                                                                  

consensus_5884#0      TTT 866
consensus_5884#1      ---