These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5884#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 866 fasta sequence [AGGCCAANAATTCGGCACGAGGCCACGTGATAATTATTATCCAATGGTATCTTCAACCACATTACGAAGTGGGTTTCGTTTGATTCGTGCGAAATCTTACCCAATCACATTGCAATATTTAATATGCCAGTATTTTCTCCACCAGCAACAAAAACAACCATCCCCTCATACCTGTTTCAATTTGACCACTTTAAAATTTCCTGCTGGTCTTCGGGAAATTTTAAAAAACACTCTACCTCACTCACTATTCTTCAATCAAATTCAACAACTATCCTTCAATTATAATGATGTACACAAAGCGTCATCTCTTTTACCTGTTGATTCACCTGATCCTTTCTTATGGATTAGTTTCTCTCCATCTGATTCAAATGATTTAAACAGTAGTACAATGGGTGATGCGGATAAATTTGACATTGAACCATACTCTCCGGAAGAGTTCGATTTTTCTTCGGATGATTTGTTGGATGAACGTGAGAAATCAGTAGACAAAGATGATAGTTCTGATGAAAATCACCTAAACGAGACCAATTTTTGTTCATCTACAACTATTGCAGGCAGTCAGAAAAGGCGTTATCAAGCTGCCATGTCCGCAAATTGTGTGTTAGACAGACTATTTGTTTTGGCTGCANAATCTACCAAAAGTGACGATAAGTCCAGTGAAACAACGTCTCATATGATGCGTAATGTGAACTCTGTTGTTTATGACCATGCACTCTGGGGTGAATTTGACGAATAAG-AAAAAACTATC-AAATCATAACTCTTCAGTGTTTAC-ATCGATCCCT-AATGTC-TCACTG-AAAATGAA-TTG-ATAT-AAATGG-TNACAGNNGTG-CTG-ATATNC-TAAANTTA-TC-TTCG-TTATT-ATACAAACCTTT] [+] EMBL CD080712 [AGGCCAANAATTCGGCACGAGGCCACGTGATAATTATTATCCAATGGTATCTTCAACCACATTACGAAGTGGGTTTCGTTTGATTCGTGCGAAATCTTACCCAATCACATTGCAATATTTAATATGCCAGTATTTTCTCCACCAGCAACAAAAACAACCATCCCCTCATACCTGTTTCAATTTGACCACTTTAAAATTTCCTGCTGGTCTTCGGGAAATTTTAAAAAACACTCTACCTCACTCACTATTCTTCAATCAAATTCAACAACTATCCTTCAATTATAATGATGTACACAAAGCGTCATCTCTTTTACCTGTTGATTCACCTGATCCTTTCTTATGGATTAGTTTCTCTCCATCTGATTCAAATGATTTAAACAGTAGTACAATGGGTGATGCGGATAAATTTGACATTGAACCATACTCTCCGGAAGAGTTCGATTTTTCTTCGGATGATTTGTTGGATGAACGTGAGAAATCAGTAGACAAAGATGATAGTTCTGATGAAAATCACCTAAACGAGACCAATTTTTGTTCATCTACAACTATTGCAGGCAGTCAGAAAAGGCGTTATCAAGCTGCCATGTCCGCAAATTGTGTGTTAGACAGACTATTTGTTTTGGCTGCANAATCTACCAAAAGTGACGATAAGTCCAGTGAAACAACGTCTCATATGATGCGTAATGTGAACTCTGTTGTTTATGACCATGCACTCTGGGGTGAATTTGACGAATAAG AAAAAACTATC AAATCATAACTCTTCAGTGTTTAC ATCGATCCCT AATGTC TCACTG AAAATGAA TTG ATAT AAATGG TNACAGNNGTG CTG ATATNC TAAANTTA TC TTCG TTATT ATACAAAC ] [-] EMBL CD074637 [ AATTCAACAACTATCCTTCAATTATAATGATGTACACAAAGCGTCATCTCTTTTACCTGTTGATTCACCTGATCCTTTCTTATGGATTAGTTTCTCTCCATCTGATTCAAATGATTTAAACAGTAGTACAATGGGTGATGCGGATAAATTTGACATTGAACCATACTCTCCGGAAGAGTTCGATTTTTCTTCGGATGATTTGTTGGATGAACGTGAGAAATCAGTAGACAAAGATGATAGTTCTGATGAAAATCACCTAAACGAGACCAATTTTTGTTCATCTACAACTATTGCAGGCAGTCAGAAAAGGCGTTATCAAGCTGCCATGTCCGCAAATTGTGTGTTAGACAGACTATTTGTTTTGGCTGCAAAATCTACCAAAAGTGACGATAAGTCCAGTGAAACAACGTCTCATATGATGCGTAATGTGAACTCTGTTGTTTATGACCATGCACTCTGGGGTGAATTTGACGAATAAGAAAAAAACTATCAAAATCATAACTCTTCAGTG TTACAATCGATCCCTAAATGTCTTCACTGAAAAATGAATTTGTATATAAAATGGTTCACAGTGTTGTCTGTATATTCTTAAATTTATTCTTTCGTTTATTAATACAAAACTTT] consensusID : consensus_5884#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [CCTTGGGATCTTGCGCTTTCAAAAAGGGTAGTATAATTGGCTGTCTTCTCGATTTATGGCATTGTAAGCTTTACTTCTTCGTTGATGGACAATTGAATCCCAATGCTTGTTTCAATCTACCACGTGATAATTATTATCCAATGGTATCTTCAACCACATTACGAAGTGGGTTTCGTTTGATTCGTGCGAAATCTTACCCAATCACATTGCAATATTTAATATGCCAGTATTTTCTCCACCAGCAACAAAAACAACCATCCCCTCATACCTGTTTCAATTTGACCACTTTAAAATTTCCTGCTGGTCTTCGGGAAATTTTAAAAAACACTCTACCTCACTCACTATTCTTCAATCAAATTC] [-] EMBL CD178984 [CCTTGGGATCTTGCGCTTTCAAAAAGGGTAGTATAATTGGCTGTCTTCTCGATTTATGGCATTGTAAGCTTTACTTCTTCGTTGATGGACAATTGAATCCCAATGCTTGTTTCAATCTACCACGTGATAATTATTATCCAATGGTATCTTCAACCACATTACGAAGTGGGTTTCGTTTGATTCGTGCGAAATCTTACCCAATCACATTGCAATATTTAATATGCCAGTATTTTCTCCACCAGCAACAAAAACAACCATCCCCTCATACCTGTTTCAATTTGACCACTTTAAAATTTCCTGCTGGTCTTCGGGAAATTTTAAAAAACACTCTACCTCACTCACTATTCTTCAATCAAATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5884#0 ------------------------------------------------------------ consensus_5884#1 CCTTGGGATCTTGCGCTTTCAAAAAGGGTAGTATAATTGGCTGTCTTCTCGATTTATGGC 60 consensus_5884#0 -----------------------------------AGGCCAANAATTCGGCACGAG--GC 23 consensus_5884#1 ATTGTAAGCTTTACTTCTTCGTTGATGGACAATTGAATCCCAATGCTTGTTTCAATCTAC 120 * ** * * * * * * consensus_5884#0 CACGTGATAATTATTATCCAATGGTATCTTCAACCACATTACGAAGTGGGTTTCGTTTGA 83 consensus_5884#1 CACGTGATAATTATTATCCAATGGTATCTTCAACCACATTACGAAGTGGGTTTCGTTTGA 180 ************************************************************ consensus_5884#0 TTCGTGCGAAATCTTACCCAATCACATTGCAATATTTAATATGCCAGTATTTTCTCCACC 143 consensus_5884#1 TTCGTGCGAAATCTTACCCAATCACATTGCAATATTTAATATGCCAGTATTTTCTCCACC 240 ************************************************************ consensus_5884#0 AGCAACAAAAACAACCATCCCCTCATACCTGTTTCAATTTGACCACTTTAAAATTTCCTG 203 consensus_5884#1 AGCAACAAAAACAACCATCCCCTCATACCTGTTTCAATTTGACCACTTTAAAATTTCCTG 300 ************************************************************ consensus_5884#0 CTGGTCTTCGGGAAATTTTAAAAAACACTCTACCTCACTCACTATTCTTCAATCAAATTC 263 consensus_5884#1 CTGGTCTTCGGGAAATTTTAAAAAACACTCTACCTCACTCACTATTCTTCAATCAAATTC 360 ************************************************************ consensus_5884#0 AACAACTATCCTTCAATTATAATGATGTACACAAAGCGTCATCTCTTTTACCTGTTGATT 323 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 CACCTGATCCTTTCTTATGGATTAGTTTCTCTCCATCTGATTCAAATGATTTAAACAGTA 383 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 GTACAATGGGTGATGCGGATAAATTTGACATTGAACCATACTCTCCGGAAGAGTTCGATT 443 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 TTTCTTCGGATGATTTGTTGGATGAACGTGAGAAATCAGTAGACAAAGATGATAGTTCTG 503 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 ATGAAAATCACCTAAACGAGACCAATTTTTGTTCATCTACAACTATTGCAGGCAGTCAGA 563 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 AAAGGCGTTATCAAGCTGCCATGTCCGCAAATTGTGTGTTAGACAGACTATTTGTTTTGG 623 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 CTGCANAATCTACCAAAAGTGACGATAAGTCCAGTGAAACAACGTCTCATATGATGCGTA 683 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 ATGTGAACTCTGTTGTTTATGACCATGCACTCTGGGGTGAATTTGACGAATAAGAAAAAA 743 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 CTATCAAATCATAACTCTTCAGTGTTTACATCGATCCCTAATGTCTCACTGAAAATGAAT 803 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 TGATATAAATGGTNACAGNNGTGCTGATATNCTAAANTTATCTTCGTTATTATACAAACC 863 consensus_5884#1 ------------------------------------------------------------ consensus_5884#0 TTT 866 consensus_5884#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||