cluster # 5888

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Schistosoma mansoni
cluster # 5888 cluster # 5888 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5888#0 length = 1030 sequences # 2

consensus_5888#1 length = 189 sequences # 1

consensusID : consensus_5888#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1030
fasta sequence

                              [ANATCTTGGCTCGAGGGCCTGTGACTTTCAAATACACATTTTGTCAGTGTTATAAGTGTTACAAAAATAATTAGTTGTAAATAGTTTATATGCCGTTAACAGTAATATATTGTAAAACTAGTAACGGTGAACTAGAAACGACTTATGATATGAAACTTATTGATTGCGAGATTGCTGCTTGCTAGATATTTATCGGGCTTGAAATTTGTCGTTTTCTCATTTGGGGATTTACTCCAAGAGGCATTGTTGTCAGCCATTAAAATCCTCTTTCATTCTAAATGCCATTATGAATAGCTATCTCAGAAACATTTTTTGCCTCTCATTGGCTAAACGGTCACACGTTATCCCTCTTGGAGTTGTATATCTTTCAGAAACATACCTTCCATTTAAAACAACCTAACATGGTTTCAAAATCACATCCAAAAAGTCCCAGTCGCTATTCAATACTTAAAAATCCCTCCTAAATTTACCAGTATTTCAATGTCATCAATTCTTGTGAAACAAATAAATGTAGTGTTAATTAGAGTTACTCAAATATTTCACCTATCTTCTGAGTGTACCCATAAGAGAGATCTTCGTTTAATGGTGTGCTCCTGATTTTCCTTCCAAAGCACTTCTACCAAGACATTCAGTTAAAGTTATACACTTTTCTACTTCAATAGAATCCATTGTAACTACTTCGGCTCAGTGGATTAATGTTGATATTNTGCAGCTATTCGAATCATTTCTCCATTAATACTGTTTTTGCTATACGTTTACTGTCTGTATTTTTCTTTAGAAAACTGAGGAATATCTGTCAAAATTAGTGGTAAATAAAACAATTTACGCTAAAATTGATCGACTTGAAGGAGTGGTACACTTTATAGCCAAAAAGATGCCGACAGAAGTTTTAAATGATTGGTCTTACAATACTAGAAATTTAATGGCACTGATCAATCAAACAACACATTTAATCAACAAAGAACGTATGATCCATGGTGTGTAAAATAAAGTTATAAGTTTGTCACTCTTGTTTTATATGAATAAAATT]

[+] EMBL CD080721             [ANATCTTGGCTCGAGGGCCTGTGACTTTCAAATACACATTTTGTCAGTGTTATAAGTGTTACAAAAATAATTAGTTGTAAATAGTTTATATGCCGTTAACAGTAATATATTGTAAAACTAGTAACGGTGAACTAGAAACGACTTATGATATGAAACTTATTGATTGCGAGATTGCTGCTTGCTAGATATTTATCGGGCTTGAAATTTGTCGTTTTCTCATTTGGGGATTTACTCCAAGAGGCATTGTTGTCAGCCATTAAAATCCTCTTTCATTCTAAATGCCATTATGAATAGCTATCTCAGAAACATTTTTTGCCTCTCATTGGCTAAACGGTCACACGTTATCCCTCTTGGAGTTGTATATCTTTCAGAAACATACCTTCCATTTAAAACAACCTAACATGGTTTCAAAATCACATCCAAAAAGTCCCAGTCGCTATTCAATACTTAAAAATCCCTCCTAAATTTACCAGTATTTCAATGTCATCAATTCTTGTGAAACAAATAAATGTAGTGTTAATTAGAGTTACTCAAATATTTCACCTATCTTCTGAGTGTACCCATAAGAGAGATCTTCGTTTAATGGTGTGCTCCTGATTTTCCTTCCAAAGCACTTCTACCAAGACATTCAGTTAAAGTTATACACTTTTCTACTTCAATAGAATCCATTGTAACTACTTCGGCTCAGTGGATTAATGTTGATATTNTGCAGCTA                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD074646             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                TAAAAATCCCTCNTAAATTTACCAGTATTTCAATGTCATCAATTCTTGTGAAACAAATAAATGTAGTGTTAATTAGAGTTACTCAAATATTTCACCTATCTTCTGAGTGTACCCATAAGAGAGATCTTCGTTTAATGGTGTGCTCCTGATTTTCCTTCCAAAGCACTTCTACCAAGACATTCAGTTAAAGTTATACACTTTTCTACTTCAATAGAATCCATTGTAACTACTTCGGCTCAGTGGATTAATGTTGATATTTTGCAGCTATTCGAATCATTTCTCCATTAATACTGTTTTTGCTATACGTTTACTGTCTGTATTTTTCTTTAGAAAACTGAGGAATATCTGTCAAAATTAGTGGTAAATAAAACAATTTACGCTAAAATTGATCGACTTGAAGGAGTGGTACACTTTATAGCCAAAAAGATGCCGACAGAAGTTTTAAATGATTGGTCTTACAATACTAGAAATTTAATGGCACTGATCAATCAAACAACACATTTAATCAACAAAGAACGTATGATCCATGGTGTGTAAAATAAAGTTATAAGTTTGTCACTCTTGTTTTATATGAATAAAATT]




>consensus_5888#0
ANATCTTGGCTCGAGGGCCTGTGACTTTCAAATACACATTTTGTCAGTGTTATAAGTGTT
ACAAAAATAATTAGTTGTAAATAGTTTATATGCCGTTAACAGTAATATATTGTAAAACTA
GTAACGGTGAACTAGAAACGACTTATGATATGAAACTTATTGATTGCGAGATTGCTGCTT
GCTAGATATTTATCGGGCTTGAAATTTGTCGTTTTCTCATTTGGGGATTTACTCCAAGAG
GCATTGTTGTCAGCCATTAAAATCCTCTTTCATTCTAAATGCCATTATGAATAGCTATCT
CAGAAACATTTTTTGCCTCTCATTGGCTAAACGGTCACACGTTATCCCTCTTGGAGTTGT
ATATCTTTCAGAAACATACCTTCCATTTAAAACAACCTAACATGGTTTCAAAATCACATC
CAAAAAGTCCCAGTCGCTATTCAATACTTAAAAATCCCTCCTAAATTTACCAGTATTTCA
ATGTCATCAATTCTTGTGAAACAAATAAATGTAGTGTTAATTAGAGTTACTCAAATATTT
CACCTATCTTCTGAGTGTACCCATAAGAGAGATCTTCGTTTAATGGTGTGCTCCTGATTT
TCCTTCCAAAGCACTTCTACCAAGACATTCAGTTAAAGTTATACACTTTTCTACTTCAAT
AGAATCCATTGTAACTACTTCGGCTCAGTGGATTAATGTTGATATTNTGCAGCTATTCGA
ATCATTTCTCCATTAATACTGTTTTTGCTATACGTTTACTGTCTGTATTTTTCTTTAGAA
AACTGAGGAATATCTGTCAAAATTAGTGGTAAATAAAACAATTTACGCTAAAATTGATCG
ACTTGAAGGAGTGGTACACTTTATAGCCAAAAAGATGCCGACAGAAGTTTTAAATGATTG
GTCTTACAATACTAGAAATTTAATGGCACTGATCAATCAAACAACACATTTAATCAACAA
AGAACGTATGATCCATGGTGTGTAAAATAAAGTTATAAGTTTGTCACTCTTGTTTTATAT
GAATAAAATT

consensusID : consensus_5888#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence

                              [TTTGGATATCGATAAAACTGAGGAATATCTGGCAAAATTAGTGGTAAATAAAACAATTTACGCTAAAATTGATCGACTTGAAGGAGTGGTACAHHTTATAGCCAAAAAGATGCCGACAGAAGTTTTAAAAGATTGGGCTYAACAAAACTAGAAABYAATGGCCCCGTCCAACCGTCACTCCCAGGAGGS]

[+] EMBL SMRAP058             [TTTGGATATCGATAAAACTGAGGAATATCTGGCAAAATTAGTGGTAAATAAAACAATTTACGCTAAAATTGATCGACTTGAAGGAGTGGTACAHHTTATAGCCAAAAAGATGCCGACAGAAGTTTTAAAAGATTGGGCTYAACAAAACTAGAAABYAATGGCCCCGTCCAACCGTCACTCCCAGGAGGS]




>consensus_5888#1
TTTGGATATCGATAAAACTGAGGAATATCTGGCAAAATTAGTGGTAAATAAAACAATTTA
CGCTAAAATTGATCGACTTGAAGGAGTGGTACAHHTTATAGCCAAAAAGATGCCGACAGA
AGTTTTAAAAGATTGGGCTYAACAAAACTAGAAABYAATGGCCCCGTCCAACCGTCACTC
CCAGGAGGS

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5888#0      ANATCTTGGCTCGAGGGCCTGTGACTTTCAAATACACATTTTGTCAGTGTTATAAGTGTT 60
consensus_5888#1      ------------------------------------------------------------
                                                                                  

consensus_5888#0      ACAAAAATAATTAGTTGTAAATAGTTTATATGCCGTTAACAGTAATATATTGTAAAACTA 120
consensus_5888#1      ------------------------------------------------------------
                                                                                  

consensus_5888#0      GTAACGGTGAACTAGAAACGACTTATGATATGAAACTTATTGATTGCGAGATTGCTGCTT 180
consensus_5888#1      ------------------------------------------------------------
                                                                                  

consensus_5888#0      GCTAGATATTTATCGGGCTTGAAATTTGTCGTTTTCTCATTTGGGGATTTACTCCAAGAG 240
consensus_5888#1      ------------------------------------------------------------
                                                                                  

consensus_5888#0      GCATTGTTGTCAGCCATTAAAATCCTCTTTCATTCTAAATGCCATTATGAATAGCTATCT 300
consensus_5888#1      ------------------------------------------------------------
                                                                                  

consensus_5888#0      CAGAAACATTTTTTGCCTCTCATTGGCTAAACGGTCACACGTTATCCCTCTTGGAGTTGT 360
consensus_5888#1      ------------------------------------------------------------
                                                                                  

consensus_5888#0      ATATCTTTCAGAAACATACCTTCCATTTAAAACAACCTAACATGGTTTCAAAATCACATC 420
consensus_5888#1      ------------------------------------------------------------
                                                                                  

consensus_5888#0      CAAAAAGTCCCAGTCGCTATTCAATACTTAAAAATCCCTCCTAAATTTACCAGTATTTCA 480
consensus_5888#1      ------------------------------------------------------------
                                                                                  

consensus_5888#0      ATGTCATCAATTCTTGTGAAACAAATAAATGTAGTGTTAATTAGAGTTACTCAAATATTT 540
consensus_5888#1      ------------------------------------------------------------
                                                                                  

consensus_5888#0      CACCTATCTTCTGAGTGTACCCATAAGAGAGATCTTCGTTTAATGGTGTGCTCCTGATTT 600
consensus_5888#1      ------------------------------------------------------------
                                                                                  

consensus_5888#0      TCCTTCCAAAGCACTTCTACCAAGACATTCAGTTAAAGTTATACACTTTTCTACTTCAAT 660
consensus_5888#1      ------------------------------------------------------------
                                                                                  

consensus_5888#0      AGAATCCATTGTAACTACTTCGGCTCAGTGGATTAATGTTGATATTNTGCAGCTATTCGA 720
consensus_5888#1      ------------------------------------------------------------
                                                                                  

consensus_5888#0      ATCATTTCTCCATTAATACTGTTTTTGCTATACGTTTACTGTCTGTATTTTTCTTTAGAA 780
consensus_5888#1      ---------------------------------------------TTTGGATATCGATAA 15
                                                                   * *   * *  * **

consensus_5888#0      AACTGAGGAATATCTGTCAAAATTAGTGGTAAATAAAACAATTTACGCTAAAATTGATCG 840
consensus_5888#1      AACTGAGGAATATCTGGCAAAATTAGTGGTAAATAAAACAATTTACGCTAAAATTGATCG 75
                      **************** *******************************************

consensus_5888#0      ACTTGAAGGAGTGGTACACTTTATAGCCAAAAAGATGCCGACAGAAGTTTTAAATGATTG 900
consensus_5888#1      ACTTGAAGGAGTGGTACAHHTTATAGCCAAAAAGATGCCGACAGAAGTTTTAAAAGATTG 135
                      ******************  ********************************** *****

consensus_5888#0      GTCTTA-CAATACTAGAAATTTAATGGCACTGATCAATCAAACAACACATTTAATCAACA 959
consensus_5888#1      GGCTYAACAAAACTAGAAABY-AATGGCCCCGTCCAAC----CGTCACTCCCAGGAGGS- 189
                      * ** * *** ********   ****** * *  ***     *  ***    *       

consensus_5888#0      AAGAACGTATGATCCATGGTGTGTAAAATAAAGTTATAAGTTTGTCACTCTTGTTTTATA 1019
consensus_5888#1      ------------------------------------------------------------
                                                                                  

consensus_5888#0      TGAATAAAATT 1030
consensus_5888#1      -----------