cluster # 5891

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Schistosoma mansoni
cluster # 5891 cluster # 5891 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5891#0 length = 624 sequences # 2

consensus_5891#1 length = 352 sequences # 1

consensusID : consensus_5891#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 624
fasta sequence

                              [ATACTCTGTCCACATTTCCTATAGACGATAGGGCTGTGTTCCCGATACCGGCAGAACATCCTCGTCCACTTAGTTTTTTAAACCGGTCTGTACAACGCAATTTGACCCTTGGTTACTGCGTCGATGTCGTAACACCTTCAGATCCCCTTTCTTATAATGTTCCGTTCTCACCTACATACCGTATCAGACAACCGGTCAAACCTGAAAATGGAGTAAACAGTAATACACCAGAACATCACTCTAGTAGTTCATTGGTCCGTCAGCCATTCCATCGAAAAAGATTTTTGGGTTTACAGTCGACTACCGTAAACACTGACAATATTGTTTTTGAAGATGACTCTATTAATAATAATGCTTCTGACTCTGAGCATCATGAGAACGATCGATCACGTGCCCCCACCAGTCCTTGGAGACTGCGACGACGCTGGTGGGCTCGCAATCCTTTGTCTGGTGTTTCACCACTTGGCTCTCCTCCTTACTCATCTCCTTCATACACCGAACGTCTATCCTCTGATTCTGCTCGACAACGAGAGGATGTTTCTGATCGCTTCAATGGTTCATGTGCATCGATAGCTGGTGCAAGTTCTCAGTTTAGTCATTCACAGTTCGCAGTTGACGAGGACT]

[+] EMBL CD195258             [ATACTCTGTCCACATTTCCTATAGACGATAGGGCTGTGTTCCCGATACCGGCAGAACATCCTCGTCCACTTAGTTTTTTAAACCGGTCTGTACAACGCAATTTGACCCTTGGTTACTGCGTCGATGTCGTAACACCTTCAGATCCCCTTTCTTATAATGTTCCGTTCTCACCTACATACCGTATCAGACAACCGGTCAAACCTGAAAATGGAGTAAACAGTAATACACCAGAACATCACTCTAGTAGTTCATTGGTCCGTCAGCCATTCCATCGAAAAAGATTTTTGGGTTTACAGTCGACTACCGTAAACACTGACAATATTGTTTTTGAAGATGACTCTATTAATAATAATGCTTCTGACTCTGAGCATCATGAGAACGATCGATCACGTGCCCCCACCAGTCCTTGGAGACTGCGACGACGCTGGTGGGCTCGCAATCCTTTGTCTGGTGTTTCACCACTTGGC                                                                                                                                                             ]
[+] EMBL CD095087             [                                                                                                                                 TAACACCTTCAGATCCCCTTTCTTATAATGTTCCGTTCTCACCTACATACCGTATCAGACAACCGGTCAAACCTGAAAATGGAGTAAACAGTAATACACCAGAACAACACTCTAGTAGTTCATTGGTCCGTCAGCCATTCCATCGAAAAAGATTTTTGGGTTTACAGTCGACTACCGTAAACACTGACAATATTGTTTTTGAAGATGACTCTATTAATAATAATGCTTCTGACTCTGAGCATCATGAGAACGATCGATCACGTGCCCCCACCAGTCCTTGGAGACTGCGACGACGCTGGTGGGCTCGCAATCCTTTGTCTGGTGTTTCACCACTTGGCTCTCCTCCTTACTCATCTCCTTCATACACCGAACGTCTATCCTCTGATTCTGCTCGACAACGAGAGGATGTTTCTGATCGCTTCAATGGTTCATGTGCATCGATAGCTGGTGCAAGTTCTCAGTTTAGTCATTCACAGTTCGCAGTTGACGAGGACT]




>consensus_5891#0
ATACTCTGTCCACATTTCCTATAGACGATAGGGCTGTGTTCCCGATACCGGCAGAACATC
CTCGTCCACTTAGTTTTTTAAACCGGTCTGTACAACGCAATTTGACCCTTGGTTACTGCG
TCGATGTCGTAACACCTTCAGATCCCCTTTCTTATAATGTTCCGTTCTCACCTACATACC
GTATCAGACAACCGGTCAAACCTGAAAATGGAGTAAACAGTAATACACCAGAACATCACT
CTAGTAGTTCATTGGTCCGTCAGCCATTCCATCGAAAAAGATTTTTGGGTTTACAGTCGA
CTACCGTAAACACTGACAATATTGTTTTTGAAGATGACTCTATTAATAATAATGCTTCTG
ACTCTGAGCATCATGAGAACGATCGATCACGTGCCCCCACCAGTCCTTGGAGACTGCGAC
GACGCTGGTGGGCTCGCAATCCTTTGTCTGGTGTTTCACCACTTGGCTCTCCTCCTTACT
CATCTCCTTCATACACCGAACGTCTATCCTCTGATTCTGCTCGACAACGAGAGGATGTTT
CTGATCGCTTCAATGGTTCATGTGCATCGATAGCTGGTGCAAGTTCTCAGTTTAGTCATT
CACAGTTCGCAGTTGACGAGGACT

consensusID : consensus_5891#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence

                              [GGCATTCACATTGAGGGAATAAGCGGCGCTTGACTACAGGATCTACGTACTCGCCAGTAAACAGTCATACTCTGTCCACATTTCCTATAGACGATAGGGCTGTGTTCCCGATACCGGCAGAACATCCTCGTCCACTTAGTTTTATAAACCGGTCTGTACTACGCAATCTGACCATTGGTTACTGCGTAGATGTCGTAACACCTTCAGATCCCCTTTCTTATAATGTTCCGTTCTCACGTACATACCGTATCAGAACCACAATCGATCACAATACCATACTTTACACGGAATTCGTACTCCCCGGGCGAGCCAGATGTTCTAGTTCGAGAGCGACCGCGATGGCGTAGAGCTC]

[-] EMBL BG931524             [GGCATTCACATTGAGGGAATAAGCGGCGCTTGACTACAGGATCTACGTACTCGCCAGTAAACAGTCATACTCTGTCCACATTTCCTATAGACGATAGGGCTGTGTTCCCGATACCGGCAGAACATCCTCGTCCACTTAGTTTTATAAACCGGTCTGTACTACGCAATCTGACCATTGGTTACTGCGTAGATGTCGTAACACCTTCAGATCCCCTTTCTTATAATGTTCCGTTCTCACGTACATACCGTATCAGAACCACAATCGATCACAATACCATACTTTACACGGAATTCGTACTCCCCGGGCGAGCCAGATGTTCTAGTTCGAGAGCGACCGCGATGGCGTAGAGCTC]




>consensus_5891#1
GGCATTCACATTGAGGGAATAAGCGGCGCTTGACTACAGGATCTACGTACTCGCCAGTAA
ACAGTCATACTCTGTCCACATTTCCTATAGACGATAGGGCTGTGTTCCCGATACCGGCAG
AACATCCTCGTCCACTTAGTTTTATAAACCGGTCTGTACTACGCAATCTGACCATTGGTT
ACTGCGTAGATGTCGTAACACCTTCAGATCCCCTTTCTTATAATGTTCCGTTCTCACGTA
CATACCGTATCAGAACCACAATCGATCACAATACCATACTTTACACGGAATTCGTACTCC
CCGGGCGAGCCAGATGTTCTAGTTCGAGAGCGACCGCGATGGCGTAGAGCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5891#0      ------------------------------------------------------------
consensus_5891#1      GGCATTCACATTGAGGGAATAAGCGGCGCTTGACTACAGGATCTACGTACTCGCCAGTAA 60
                                                                                  

consensus_5891#0      ------ATACTCTGTCCACATTTCCTATAGACGATAGGGCTGTGTTCCCGATACCGGCAG 54
consensus_5891#1      ACAGTCATACTCTGTCCACATTTCCTATAGACGATAGGGCTGTGTTCCCGATACCGGCAG 120
                            ******************************************************

consensus_5891#0      AACATCCTCGTCCACTTAGTTTTTTAAACCGGTCTGTACAACGCAATTTGACCCTTGGTT 114
consensus_5891#1      AACATCCTCGTCCACTTAGTTTTATAAACCGGTCTGTACTACGCAATCTGACCATTGGTT 180
                      *********************** *************** ******* ***** ******

consensus_5891#0      ACTGCGTCGATGTCGTAACACCTTCAGATCCCCTTTCTTATAATGTTCCGTTCTCACCTA 174
consensus_5891#1      ACTGCGTAGATGTCGTAACACCTTCAGATCCCCTTTCTTATAATGTTCCGTTCTCACGTA 240
                      ******* ************************************************* **

consensus_5891#0      CATACCGTATCAGACAACCGGTCAAACCTGAAAATGGAGTAAACA-GTAATAC--ACCAG 231
consensus_5891#1      CATACCGTATCAGAACCACAATCGATCACAATACCATACTTTACACGGAATTCGTACTCC 300
                      **************    *  ** * *   * *    * *  *** * *** *  **   

consensus_5891#0      AACATCACTCTAGTAGTTCATTGGTCCGTCAGCCATTCCATCGAAAAAGATTTTTGGGTT 291
consensus_5891#1      CCGGGCGAGCCAGATGTTC--TAGTTCGAGAGCGACCGCGATGGCGTAGAGCTC------ 352
                           *   * **  ****  * ** **  *** *   *   *    ***  *       

consensus_5891#0      TACAGTCGACTACCGTAAACACTGACAATATTGTTTTTGAAGATGACTCTATTAATAATA 351
consensus_5891#1      ------------------------------------------------------------
                                                                                  

consensus_5891#0      ATGCTTCTGACTCTGAGCATCATGAGAACGATCGATCACGTGCCCCCACCAGTCCTTGGA 411
consensus_5891#1      ------------------------------------------------------------
                                                                                  

consensus_5891#0      GACTGCGACGACGCTGGTGGGCTCGCAATCCTTTGTCTGGTGTTTCACCACTTGGCTCTC 471
consensus_5891#1      ------------------------------------------------------------
                                                                                  

consensus_5891#0      CTCCTTACTCATCTCCTTCATACACCGAACGTCTATCCTCTGATTCTGCTCGACAACGAG 531
consensus_5891#1      ------------------------------------------------------------
                                                                                  

consensus_5891#0      AGGATGTTTCTGATCGCTTCAATGGTTCATGTGCATCGATAGCTGGTGCAAGTTCTCAGT 591
consensus_5891#1      ------------------------------------------------------------
                                                                                  

consensus_5891#0      TTAGTCATTCACAGTTCGCAGTTGACGAGGACT 624
consensus_5891#1      ---------------------------------