cluster # 5894

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Schistosoma mansoni
cluster # 5894 cluster # 5894 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5894#0 length = 715 sequences # 2

consensus_5894#1 length = 662 sequences # 1

consensusID : consensus_5894#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 715
fasta sequence

                              [CAANAATCGGCACGAGGTCTTACAAGCTTACTCTTAAGATATTGTTGATTGAATTTTTGTTATGACAACAGCTTGTGTGACCATTCAACCCTCTAATACAAGATTACTAGATATCTGAACTTAAATGAGCGTCCAAACCAACCTAAAAGATGTTGGCTGGATGTGTCATGTTATCCCACTGAAGAAAAATAAAGTGCAACAGTTGGCTCCTCCAATTTCGCAAATTCCAAACATTGGTTTTATGCCTGAAGAATCCAGCCACGAGAAAAAGCATACAATGTATTTCAAGTCAACTGACTCACCATATATACGACTATCTAAAATGGGTGGTAAACCAGATTTACTATGTTTTAGAGAGAACGAATACAATTCTGGACCACCCGTTCCTTATTGTCGATGCGAATGGTTTTACTTGGAGGATAATGCTCTGGAACGTAAGCAGAATATCGAACCCGAACCCACAAAATATGTGTTTAAAGTACCATTCTATATGTCTGATAGCTCGGTACATCAAATAGAGAAGAGCAAGACTACAGAAAAAGTTGTTGATCGTACACAACCTTCTATATAATCACCAATGAAAGTCAAAATGTGTTTAAAACTGCTGCCACATAAGTTCGGCTACGCAGATTATAGCGAGAAGCCAAGAACATTACGAAATCAAGTATTAATATTCCTTAACCATATCATGTTAAATTACCATGAATATTATAGA]

[+] EMBL CD080735             [CAANAATCGGCACGAGGTCTTACAAGCTTACTCTTAAGATATTGTTGATTGAATTTTTGTTATGACAACAGCTTGTGTGACCATTCAACCCTCTAATACAAGATTACTAGATATCTGAACTTAAATGAGCGTCCAAACCAACCTAAAAGATGTTGGCTGGATGTGTCATGTTATCCCACTGAAGAAAAATAAAGTGCAACAGTTGGCTCCTCCAATTTCGCAAATTCCAAACATTGGTTTTATGCCTGAAGAATCCAGCCACGAGAAAAAGCATACAATGTATTTCAAGTCAACTGACTCACCATATATACGACTATCTAAAATGGGTGGTAAACCAGATTTACTATGTTTTAGAGAGAACGAATACAATTCTGGACCACCCGTTCCTTATTGTCGATGCGAATGGTTTTACTTGGAGGATAATGCTCTGGAACGTAAGCAGAATATCGAACCCGAACCCACAAAATATGTGTTTAAAGTACCATTCTATATGTCTGATAGCTCGGTACATCAAATAGAGAAGAGCAAGACTACAGAAAAAGTTGTTGATCGTACACAACCTTCTATATAATCACCAATGAAAGTCAAAATGTGTTTAAAACTGCTGCCACATAAGTTCGGCTACGCAGATTATAGCGAGAAGCCAAGAACATTACGAAATCAAGTATTAATATTCCTTAACCATATCATGTTAAATTACCATGAATATTATAG ]
[-] EMBL CD074658             [                                                                                                          CTAGATATCTGAACTTAAATGAGCGTCCAAACCAACCTAAAAGATGTTGGCTGGATGTGTCATGTTATCCCACTGAAGAAAAATAAAGTGCAACAGTTGGCTCCTCCAATTTCGCAAATTCCAAACATTGGTTTTATGCCTGAAGAATCCAGCCACGAGAAAAAGCATACAATGTATTTCAAGTCAACTGACTCACCATATATACGACTATCTAAAATGGGTGGTAAACCAGATTTACTATGTTTTAGAGAGAACGAATACAATTCTGGACCACCCGTTCCTTATTGTCGATGCGAATGGTTTTACTTGGAGGATAATGCTCTGGAACGTAAGCAGAATATCGAACCCGAACCCACAAAATATGTGTTTAAAGTACCATTCTATATGTCTGATAGCTCGGTACATCAAATAGAGAAGAGCAAGACTACAGAAAAAGTTGTTGATCGTACACAACCTTCTATATAATCACCAATGAAAGTCAAAATGTGTTTAAAACTGCTGCCACATAAGTTCGGCTACGCAGATTATAGCGAGAAGCCAAGAACATTACGAAATCAAGTATTAATATTCCTTAACCATATCATGTTAAATTACCATGAATATTATAGA]




>consensus_5894#0
CAANAATCGGCACGAGGTCTTACAAGCTTACTCTTAAGATATTGTTGATTGAATTTTTGT
TATGACAACAGCTTGTGTGACCATTCAACCCTCTAATACAAGATTACTAGATATCTGAAC
TTAAATGAGCGTCCAAACCAACCTAAAAGATGTTGGCTGGATGTGTCATGTTATCCCACT
GAAGAAAAATAAAGTGCAACAGTTGGCTCCTCCAATTTCGCAAATTCCAAACATTGGTTT
TATGCCTGAAGAATCCAGCCACGAGAAAAAGCATACAATGTATTTCAAGTCAACTGACTC
ACCATATATACGACTATCTAAAATGGGTGGTAAACCAGATTTACTATGTTTTAGAGAGAA
CGAATACAATTCTGGACCACCCGTTCCTTATTGTCGATGCGAATGGTTTTACTTGGAGGA
TAATGCTCTGGAACGTAAGCAGAATATCGAACCCGAACCCACAAAATATGTGTTTAAAGT
ACCATTCTATATGTCTGATAGCTCGGTACATCAAATAGAGAAGAGCAAGACTACAGAAAA
AGTTGTTGATCGTACACAACCTTCTATATAATCACCAATGAAAGTCAAAATGTGTTTAAA
ACTGCTGCCACATAAGTTCGGCTACGCAGATTATAGCGAGAAGCCAAGAACATTACGAAA
TCAAGTATTAATATTCCTTAACCATATCATGTTAAATTACCATGAATATTATAGA

consensusID : consensus_5894#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence

                              [NGCCAANAATTTGGCACGAGGTGCGTGACCATTCAACCCTCTAATACAAGATTACTATATATCTGAACTTAAATGAGCGTCCAAACCAACCTAAAAGATGTTGGCTGGATGTGTCATGTTATCCCACTGAAGAAAAATAAAGTGCAACAGTTGGCTCCTCCAATTTCGCAAATTCCAAACATTGGTTTTATGCCTGAAGAATCCAGCCACGAGAAAAAGCATACAATGTATTTCAAGTCAACTGACTCACCATATATACGACTATCTAAAATGGGTGGTAAACCAGATTTACTATGTTTTAGAGAGAACGAATACAATTCTGGACCACCCGTTCCTTATTGTCGATGCGAATGGTTTTACTTGGAGGATAATGCTCTGGAACGTAAGCAGAATATCGAACCCGAACCCACAAAATATGTGTTTAAAGTACCATTCTATATGTCTGATAGCTCGGTACATCAAATAGAGAAGAGCAAGACTACAGAAAAAGTTGTTGATCGTACACAACCTTCTATATAATCACCAATGAAAGTCAAAATGTGTTTAAAACTGCTGCCACATAAGTTCGGCTACGCAGATTATAGCGAGAAGCCAAGAACATTACGAAATCAAGTATTAATATTCCTTAACCATATCATGTTAAATTACCATGAATATTATAG]

[+] EMBL CD080858             [NGCCAANAATTTGGCACGAGGTGCGTGACCATTCAACCCTCTAATACAAGATTACTATATATCTGAACTTAAATGAGCGTCCAAACCAACCTAAAAGATGTTGGCTGGATGTGTCATGTTATCCCACTGAAGAAAAATAAAGTGCAACAGTTGGCTCCTCCAATTTCGCAAATTCCAAACATTGGTTTTATGCCTGAAGAATCCAGCCACGAGAAAAAGCATACAATGTATTTCAAGTCAACTGACTCACCATATATACGACTATCTAAAATGGGTGGTAAACCAGATTTACTATGTTTTAGAGAGAACGAATACAATTCTGGACCACCCGTTCCTTATTGTCGATGCGAATGGTTTTACTTGGAGGATAATGCTCTGGAACGTAAGCAGAATATCGAACCCGAACCCACAAAATATGTGTTTAAAGTACCATTCTATATGTCTGATAGCTCGGTACATCAAATAGAGAAGAGCAAGACTACAGAAAAAGTTGTTGATCGTACACAACCTTCTATATAATCACCAATGAAAGTCAAAATGTGTTTAAAACTGCTGCCACATAAGTTCGGCTACGCAGATTATAGCGAGAAGCCAAGAACATTACGAAATCAAGTATTAATATTCCTTAACCATATCATGTTAAATTACCATGAATATTATAG]




>consensus_5894#1
NGCCAANAATTTGGCACGAGGTGCGTGACCATTCAACCCTCTAATACAAGATTACTATAT
ATCTGAACTTAAATGAGCGTCCAAACCAACCTAAAAGATGTTGGCTGGATGTGTCATGTT
ATCCCACTGAAGAAAAATAAAGTGCAACAGTTGGCTCCTCCAATTTCGCAAATTCCAAAC
ATTGGTTTTATGCCTGAAGAATCCAGCCACGAGAAAAAGCATACAATGTATTTCAAGTCA
ACTGACTCACCATATATACGACTATCTAAAATGGGTGGTAAACCAGATTTACTATGTTTT
AGAGAGAACGAATACAATTCTGGACCACCCGTTCCTTATTGTCGATGCGAATGGTTTTAC
TTGGAGGATAATGCTCTGGAACGTAAGCAGAATATCGAACCCGAACCCACAAAATATGTG
TTTAAAGTACCATTCTATATGTCTGATAGCTCGGTACATCAAATAGAGAAGAGCAAGACT
ACAGAAAAAGTTGTTGATCGTACACAACCTTCTATATAATCACCAATGAAAGTCAAAATG
TGTTTAAAACTGCTGCCACATAAGTTCGGCTACGCAGATTATAGCGAGAAGCCAAGAACA
TTACGAAATCAAGTATTAATATTCCTTAACCATATCATGTTAAATTACCATGAATATTAT
AG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5894#0      CAANAATCGGCACGAGGTCTTACAAGCTTACTCTTAAGATATTGTTGATTGAATTTTTGT 60
consensus_5894#1      ----------------------------------------------NGCCAANAATTTGG 14
                                                                         *   **** 

consensus_5894#0      TATGACAACAGCTTGTGTGACCATTCAACCCTCTAATACAAGATTACTAGATATCTGAAC 120
consensus_5894#1      CACGAGG------TGCGTGACCATTCAACCCTCTAATACAAGATTACTATATATCTGAAC 68
                       * **        ** ********************************* **********

consensus_5894#0      TTAAATGAGCGTCCAAACCAACCTAAAAGATGTTGGCTGGATGTGTCATGTTATCCCACT 180
consensus_5894#1      TTAAATGAGCGTCCAAACCAACCTAAAAGATGTTGGCTGGATGTGTCATGTTATCCCACT 128
                      ************************************************************

consensus_5894#0      GAAGAAAAATAAAGTGCAACAGTTGGCTCCTCCAATTTCGCAAATTCCAAACATTGGTTT 240
consensus_5894#1      GAAGAAAAATAAAGTGCAACAGTTGGCTCCTCCAATTTCGCAAATTCCAAACATTGGTTT 188
                      ************************************************************

consensus_5894#0      TATGCCTGAAGAATCCAGCCACGAGAAAAAGCATACAATGTATTTCAAGTCAACTGACTC 300
consensus_5894#1      TATGCCTGAAGAATCCAGCCACGAGAAAAAGCATACAATGTATTTCAAGTCAACTGACTC 248
                      ************************************************************

consensus_5894#0      ACCATATATACGACTATCTAAAATGGGTGGTAAACCAGATTTACTATGTTTTAGAGAGAA 360
consensus_5894#1      ACCATATATACGACTATCTAAAATGGGTGGTAAACCAGATTTACTATGTTTTAGAGAGAA 308
                      ************************************************************

consensus_5894#0      CGAATACAATTCTGGACCACCCGTTCCTTATTGTCGATGCGAATGGTTTTACTTGGAGGA 420
consensus_5894#1      CGAATACAATTCTGGACCACCCGTTCCTTATTGTCGATGCGAATGGTTTTACTTGGAGGA 368
                      ************************************************************

consensus_5894#0      TAATGCTCTGGAACGTAAGCAGAATATCGAACCCGAACCCACAAAATATGTGTTTAAAGT 480
consensus_5894#1      TAATGCTCTGGAACGTAAGCAGAATATCGAACCCGAACCCACAAAATATGTGTTTAAAGT 428
                      ************************************************************

consensus_5894#0      ACCATTCTATATGTCTGATAGCTCGGTACATCAAATAGAGAAGAGCAAGACTACAGAAAA 540
consensus_5894#1      ACCATTCTATATGTCTGATAGCTCGGTACATCAAATAGAGAAGAGCAAGACTACAGAAAA 488
                      ************************************************************

consensus_5894#0      AGTTGTTGATCGTACACAACCTTCTATATAATCACCAATGAAAGTCAAAATGTGTTTAAA 600
consensus_5894#1      AGTTGTTGATCGTACACAACCTTCTATATAATCACCAATGAAAGTCAAAATGTGTTTAAA 548
                      ************************************************************

consensus_5894#0      ACTGCTGCCACATAAGTTCGGCTACGCAGATTATAGCGAGAAGCCAAGAACATTACGAAA 660
consensus_5894#1      ACTGCTGCCACATAAGTTCGGCTACGCAGATTATAGCGAGAAGCCAAGAACATTACGAAA 608
                      ************************************************************

consensus_5894#0      TCAAGTATTAATATTCCTTAACCATATCATGTTAAATTACCATGAATATTATAGA 715
consensus_5894#1      TCAAGTATTAATATTCCTTAACCATATCATGTTAAATTACCATGAATATTATAG- 662
                      ******************************************************