These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5895#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 398 fasta sequence [AAATTCATTCCCCGAATTGTAGTCGAAATTTTCCTCACTTCGAGATAAACTAACTACGCGTCCATTGGATTGAATAACAGGGCCAAGGCGATGTTTAGCACTTATTCTACCTTCCCCATGTAGTGATTTAGTATTTACCAAGCGTGGACCCAGTCGAAGTTTTCTATCATTCAGTACATCTGTCTGGTCGAAGTATCCGACAGAACGCAAGCGACCAACTCTTGAAGAATTACGAAGTTTAGGAGGAGAAATCATTTGTGTGGATTTAGGTTCGGCACCAGACAACGTAATGAAAAACCTTGTAGAATCAGGCTGTGAAGACGACGACACATCAGAACAAGCTATTGGTCGAGCGATTGGGTTTCGTTTTGTTGGAGTGTGCAAACTGGATTCAGTTG] [+] EMBL CD144125 [AAATTCATTCCCCGAATTGTAGTCGAAATTTTCCTCACTTCGAGATAAACTAACTACGCGTCCATTGGATTGAATAACAGGGCCAAGGCGATGTTTAGCACTTATTCTACCTTCCCCATGTAGTGATTTAGTATTTACCAAGCGTGGACCCAGTCGAAGTTTTCTATCATTCAGTACATCTGTCTGGTCGAAGTATCCGACAGAACGCAAGCGACCAACTCTTGAAGAATTACGAAGTTTAGGAGGAGAAATCATTTGTGTGGATTTAGGTTCGGCACCAGACAACGTAATGAAAAACCTTGTAGAATCAGGCTGTGAAGACGACGACACATCAGAACAAGCTATTGGTCGAGCGATTGGGTTTC ] [+] EMBL CD139725 [ CAGTCGAAGTTTTCAATCATTCAGTACATCTGTCTGGTCGAAGTATCCGACAGAACGCAAGCGACCAACTCTTGAAGAATTACGAAGTTTAGGAGGAGAAATCATTTGTGTGGATTTAGGTTCGGCACCAGACAACGTAATGAAAAACCTTGTAGAATCAGGCTGTGAAGACGACGACACATCAGAACAAGCTATTGGTCGAGCGATTGGTTTTCGTTTTGTTGGAGTGTGCAAACTGGATTCAGTTG] consensusID : consensus_5895#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [CTCCTTTAGGACCAGTTAAGCATGGTAGATATGCTAATAGTTCTCGCGGGCCCCACGCAGAAGTAGATGGTAGTGTAAAGGCTGCAGCAGATGTATATGTTTCTGAGGATAATGAATCTTATCACATTAAAGAAGAGCGCAAAATCATGTCCACTTCTTCCTTATCCCGAAAAATAGTTCAAGAAGGTGAAAATAATTCGGAATTATCGGATAAAATGAACAACCTACAATCAGTTGTTGAAGTGAAAAACTCAGATAGTCTTAAGCATGTTAGAACAAAACAAGAGTATCCTCAACCATCAAGCTTGCTGCTTAAAAGAGCTGTGAACGAAGCTAAAGCCAGCACAATGGCAACTGAATCCAGTTTGCACACTCCAACAAAAC] [+] EMBL CD094955 [CTCCTTTAGGACCAGTTAAGCATGGTAGATATGCTAATAGTTCTCGCGGGCCCCACGCAGAAGTAGATGGTAGTGTAAAGGCTGCAGCAGATGTATATGTTTCTGAGGATAATGAATCTTATCACATTAAAGAAGAGCGCAAAATCATGTCCACTTCTTCCTTATCCCGAAAAATAGTTCAAGAAGGTGAAAATAATTCGGAATTATCGGATAAAATGAACAACCTACAATCAGTTGTTGAAGTGAAAAACTCAGATAGTCTTAAGCATGTTAGAACAAAACAAGAGTATCCTCAACCATCAAGCTTGCTGCTTAAAAGAGCTGTGAACGAAGCTAAAGCCAGCACAATGGCAACTGAATCCAGTTTGCACACTCCAACAAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5895#0 AAATTCATTCCCCGAATTGTAGTCGAAATTTTCCTCACTTCGAGATAAACTAACTACGCG 60 consensus_5895#1 -------CTCCTTTAGGACCAGTTAAGCATGGTAGATATGCTAATAGTTCTCGCGGGCCC 53 *** * *** * * * * * ** * * consensus_5895#0 TCCATTGGATTGAATAACAGGGCCAAGGCGATGTTTAGCACTTATTCTACCTTCCCCATG 120 consensus_5895#1 CACGCAGAAGTAGATGGTAGTGTAAAGGCTGCAGCAGATGTATATGTTTCTGAGGATAAT 113 * * * * ** ** * ***** *** * * * consensus_5895#0 TAGTGATTTAGTATTTACCAAG--CGTGGACCCAGTCGAAGTTTTCTATCATTCAGTACA 178 consensus_5895#1 GAATCTTATCACATTAAAGAAGAGCGCAAAATCATGTCCACTTCTTCCTTATCCCGAAAA 173 * * * * *** * *** ** * ** * ** * * ** * * * * consensus_5895#0 TCTGTCTGGTCGAAGTATCCGACAGAACGCAAGCGACCAACTCT-TGAAGAAT-TACGA- 235 consensus_5895#1 ATAGTTCAA--GAAGGTGAAAATAATTCGGAATTATCGGATAAAATGAACAACCTACAAT 231 ** **** * * ** ** * * **** ** *** * consensus_5895#0 -AGTTTAGGAGGAGAAATCATTTGTGTGGATTTAGGTTCGGCACCAGACAACGTAATGAA 294 consensus_5895#1 CAGTTGTTGAAGTGAAAA-ACTCAGATAGTCTTAAGCATGTTA--GAACAAAACAA--GA 286 **** ** * **** * * * * *** * * * **** ** * consensus_5895#0 AAACCTTGTAGAATCAGGCTGTGAAGACGACGACACATCAGAAC-AAGCTATTGGTCGAG 353 consensus_5895#1 GTATCCTCAACCATCAAGCT-TGCTGCTTAAAAGAGCTGTGAACGAAGCTAAAGCCAGCA 345 * * * * **** *** ** * * * * * **** ****** * * consensus_5895#0 CGATTG-GGTTTCGTTTTGTTGGAGTGTGCAAACTGGATTCAGTTG 398 consensus_5895#1 CAATGGCAACTGAATCCAGTTTGCACACTCCAACAAAAC------- 384 * ** * * * *** * * *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||