cluster # 5919

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Schistosoma mansoni
cluster # 5919 cluster # 5919 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5919#0 length = 314 sequences # 1

consensus_5919#1 length = 314 sequences # 2

consensusID : consensus_5919#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [GGTGCTCTTATGCTAAGGACCCAGTGTGGATATGATCATTTGGCTGTATGTCCCTTGAAAGACATACACTTCACACGTCCACTTTCCCCCTCACCCACCACTGTATGCTGGGATACTATAGAATTGATTGATTACATACACGCCCCCTTGACTTCTAATTCTGATAACAGTATATACTCACCATCTCCATTTGGATGCATAATGGGCTTATCCTACCTAAAGTGATCAGATAGAGTCCTTGGTCTCCTCTGGAGAAACAAAACACCTGGTCTAACCTTCCTATGTAAATTAAGGGCAGGGCTGTCCACCTTCTT]

[+] EMBL CD087482             [GGTGCTCTTATGCTAAGGACCCAGTGTGGATATGATCATTTGGCTGTATGTCCCTTGAAAGACATACACTTCACACGTCCACTTTCCCCCTCACCCACCACTGTATGCTGGGATACTATAGAATTGATTGATTACATACACGCCCCCTTGACTTCTAATTCTGATAACAGTATATACTCACCATCTCCATTTGGATGCATAATGGGCTTATCCTACCTAAAGTGATCAGATAGAGTCCTTGGTCTCCTCTGGAGAAACAAAACACCTGGTCTAACCTTCCTATGTAAATTAAGGGCAGGGCTGTCCACCTTCTT]




>consensus_5919#0
GGTGCTCTTATGCTAAGGACCCAGTGTGGATATGATCATTTGGCTGTATGTCCCTTGAAA
GACATACACTTCACACGTCCACTTTCCCCCTCACCCACCACTGTATGCTGGGATACTATA
GAATTGATTGATTACATACACGCCCCCTTGACTTCTAATTCTGATAACAGTATATACTCA
CCATCTCCATTTGGATGCATAATGGGCTTATCCTACCTAAAGTGATCAGATAGAGTCCTT
GGTCTCCTCTGGAGAAACAAAACACCTGGTCTAACCTTCCTATGTAAATTAAGGGCAGGG
CTGTCCACCTTCTT

consensusID : consensus_5919#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 314
fasta sequence

                              [CCTCCTTTTATGTTAAGGACCCAATGTGTATATAATCATTTGGCTGCATGTACCTTCAAAGACATACACTCCACACCTCCACTTTCCCCCTCACCCACCACTGTATGCTACAATACTATAGAGTTGATTAATGACATATAAGCTCCCTTGAATTCTAATTCTTATATCACTCTATACTCACCATCTCCATTTGGATGTTCAATGGGCTTATCCTACCTAAAGTGATCAGATAGAGTCCTTGGTCTCCTCTGGAGAAACAAAACACCTGGTCTAACCTTCCCATGTAAATTAAGGGCAGGGCTGTCCAGTTTCTC]

[+] EMBL CD087486             [CCTCCTTTTATGTTAAGGACCCAATGTGTATATAATCATTTGGCTGCATGTACCTTCAAAGACATACACTCCACACCTCCACTTTCCCCCTCACCCACCACTGTATGCTACAATACTATAGAGTTGATTAATGACATATAAGCTCCCTTGAATTCTAATTCTTATATCACTCTATACTCACCATCTCCATTTGGATGTTCAATGGGCTTATCCTACCTAAAGTGATCAGATAGAGTCCTTGGTCTCCTCTGGAGAAACAAAACACCTGGTCTAACCTTCCCATGTAAATTAAGGGCAGGGCTGTCCAGTTTCTC]
[+] EMBL CD087483             [CCTCCTTTTATGTTAAGGACCCAATGTGTATATAATCATTTGGCTGCATGTACCTTCAAAGACATACACTCCACACCTCCACTTTCCCCCTCACCCACCACTGTATGCTGCAATACTATAGAGTTGATTAATGACATACAAGCTCCCTTGAATTCTAATTCTTATAACACTCTATACTCACCATCTCCATTTGGATGTTCAATGGGCTTATCCTACCTAAAGTGATCAGATAGAGTCCTTGGTCTCCTCTGGAGAAACAAAACACCTGGTCTAACCTTCCCATGTAAATTAAGGGCAGGGCTGTCCAGTTTCTC]




>consensus_5919#1
CCTCCTTTTATGTTAAGGACCCAATGTGTATATAATCATTTGGCTGCATGTACCTTCAAA
GACATACACTCCACACCTCCACTTTCCCCCTCACCCACCACTGTATGCTACAATACTATA
GAGTTGATTAATGACATATAAGCTCCCTTGAATTCTAATTCTTATATCACTCTATACTCA
CCATCTCCATTTGGATGTTCAATGGGCTTATCCTACCTAAAGTGATCAGATAGAGTCCTT
GGTCTCCTCTGGAGAAACAAAACACCTGGTCTAACCTTCCCATGTAAATTAAGGGCAGGG
CTGTCCAGTTTCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5919#0      GGTGCTCTTATGCTAAGGACCCAGTGTGGATATGATCATTTGGCTGTATGTCCCTTGAAA 60
consensus_5919#1      CCTCCTTTTATGTTAAGGACCCAATGTGTATATAATCATTTGGCTGCATGTACCTTCAAA 60
                        * ** ***** ********** **** **** ************ **** **** ***

consensus_5919#0      GACATACACTTCACACGTCCACTTTCCCCCTCACCCACCACTGTATGCTGGGATACTATA 120
consensus_5919#1      GACATACACTCCACACCTCCACTTTCCCCCTCACCCACCACTGTATGCTACAATACTATA 120
                      ********** ***** ********************************   ********

consensus_5919#0      GAATTGATTGATTACATACACGCCCCCTTGACTTCTAATTCTGATAACAGTATATACTCA 180
consensus_5919#1      GAGTTGATTAATGACATATAAGCTCCCTTGAATTCTAATTCTTATATCACTCTATACTCA 180
                      ** ****** ** ***** * ** ******* ********** *** ** * ********

consensus_5919#0      CCATCTCCATTTGGATGCATAATGGGCTTATCCTACCTAAAGTGATCAGATAGAGTCCTT 240
consensus_5919#1      CCATCTCCATTTGGATGTTCAATGGGCTTATCCTACCTAAAGTGATCAGATAGAGTCCTT 240
                      *****************   ****************************************

consensus_5919#0      GGTCTCCTCTGGAGAAACAAAACACCTGGTCTAACCTTCCTATGTAAATTAAGGGCAGGG 300
consensus_5919#1      GGTCTCCTCTGGAGAAACAAAACACCTGGTCTAACCTTCCCATGTAAATTAAGGGCAGGG 300
                      **************************************** *******************

consensus_5919#0      CTGTCCACCTTCTT 314
consensus_5919#1      CTGTCCAGTTTCTC 314
                      *******  ****