cluster # 5925

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Schistosoma mansoni
cluster # 5925 cluster # 5925 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5925#0 length = 565 sequences # 2

consensus_5925#1 length = 313 sequences # 1

consensusID : consensus_5925#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 565
fasta sequence

                              [TCGAGGCCAAGAATTCGGCACGAGGCCGATCCGTACAGCTCAGGATGTTTAGCATCTTTCAATTATTTTTTTCATAATCGATGCTTGCGTCGTGTACTATTCTTTTCTCTTCGTGTATTAAATGATTCACTTTTAGATGATGATGGAGATGAACTAACTGAATCCAATTTATACTAAACAAATTCTGACGATCTTAGTTGTTTGTTTATAAACTTATTCTTTTCAGGAATGACTAAAAACTGTTTACGATGATTTATCAATAGTTTTATTGCATTACTTTCCATGTTTCTATCAATCACCTATAAGCAGAGATACACGTACAGTTTATTATGCGTACTCGTAAGCAAATTATATTTTTATCATCACCATTATACATATATGCATATACATATATACCGCACTATATTGATTCATCCTATATTTCAGGACTTTTGCATTTATAGTTTATTTTTTATTCCTCAAAATATATTTCATCATACTAACAACTATAATACATTAAATGTTTTAGAATTCCTTTTCATTTCACTTGTATTCACACACGACCAACATGTTAATATTTATAATT]

[+] EMBL CD083751             [TCGAGGCCAAGAATTCGGCACGAGGCCGATCCGTACAGCTCAGGATGTTTAGCATCTTTCAATTATTTTTTTCATAATCGATGCTTGCGTCGTGTACTATTCTTTTCTCTTCGTGTATTAAATGATTCACTTTTAGATGATGATGGAGATGAACTAACTGAATCCAATTTATACTAAACAAATTCTGACGATCTTAGTTGTTTGTTTATAAACTTATTCTTTTCAGGAATGACTAAAAACTGTTTACGATGATTTATCAATAGTTTTATTGCATTACTTTCCATGTTTCTATCAATCACCTATAAGCAGAGATACACGTACAGTTTATTATGCGTACTCGTAAGCAAATTATATTTTTATCATCACCATTATACATATATGCATATACATATATACCGCACTATATTGATTCATCCTATATTTCAGGACTTTTGCATTTATAGTTTATTTTTTATTCCTCAAAATATATTTCATCATACTAACAACTATAATACATTAAATGTTTTAGAATTCCTTTTCATTTCACTTGTATTCACACACGACCAACATGTTAATATTTATAATT]
[+] EMBL CD179956             [                                                                                                                                                                   CCAATTTATACTAAACAAATTCTGACGATCTTAGTTGTTTGTTTATAAACTTATTCTTTTCAGGAATGACTAAAAACTGTTTACGATGATTTATCAATAGTTTTATTGCATTACTTTCCATGTTTCTATCAATCACCTATAAGCAGAGATACACGTACAGTTTATTATGCGTACTCGTAAGCAAATTATATTTTTATCATCACCATTATACATATATGCATATACATATATACCGCACTATATTGATTCATC                                                                                                                                                      ]




>consensus_5925#0
TCGAGGCCAAGAATTCGGCACGAGGCCGATCCGTACAGCTCAGGATGTTTAGCATCTTTC
AATTATTTTTTTCATAATCGATGCTTGCGTCGTGTACTATTCTTTTCTCTTCGTGTATTA
AATGATTCACTTTTAGATGATGATGGAGATGAACTAACTGAATCCAATTTATACTAAACA
AATTCTGACGATCTTAGTTGTTTGTTTATAAACTTATTCTTTTCAGGAATGACTAAAAAC
TGTTTACGATGATTTATCAATAGTTTTATTGCATTACTTTCCATGTTTCTATCAATCACC
TATAAGCAGAGATACACGTACAGTTTATTATGCGTACTCGTAAGCAAATTATATTTTTAT
CATCACCATTATACATATATGCATATACATATATACCGCACTATATTGATTCATCCTATA
TTTCAGGACTTTTGCATTTATAGTTTATTTTTTATTCCTCAAAATATATTTCATCATACT
AACAACTATAATACATTAAATGTTTTAGAATTCCTTTTCATTTCACTTGTATTCACACAC
GACCAACATGTTAATATTTATAATT

consensusID : consensus_5925#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence

                              [ATATATAGTTATCGTCCTGACCATCTATCCGATCCGTACAGCTCAGGATGTTTAGCATCTTTCAATTATTTTTTTCATAATCGATGCTTGCGTCGTGTACTATTCTTTTCTCTTCGTGTATTAAATGATTCACTTTTAGATTGATGATGGAGATGAACTAACTGAATCCAATTTATACTAAACAAATTCTGACGATCTTAGTTGTTTGGTTATAAACTTATTCTTTTCAGGAATGACTAAAAACTGTTTACGATGATTTTACCAATAGTTTTATTGCATTACTTTCCAGGTTTCTATCAATCCCCTATAGCAG]

[+] EMBL AW186605             [ATATATAGTTATCGTCCTGACCATCTATCCGATCCGTACAGCTCAGGATGTTTAGCATCTTTCAATTATTTTTTTCATAATCGATGCTTGCGTCGTGTACTATTCTTTTCTCTTCGTGTATTAAATGATTCACTTTTAGATTGATGATGGAGATGAACTAACTGAATCCAATTTATACTAAACAAATTCTGACGATCTTAGTTGTTTGGTTATAAACTTATTCTTTTCAGGAATGACTAAAAACTGTTTACGATGATTTTACCAATAGTTTTATTGCATTACTTTCCAGGTTTCTATCAATCCCCTATAGCAG]




>consensus_5925#1
ATATATAGTTATCGTCCTGACCATCTATCCGATCCGTACAGCTCAGGATGTTTAGCATCT
TTCAATTATTTTTTTCATAATCGATGCTTGCGTCGTGTACTATTCTTTTCTCTTCGTGTA
TTAAATGATTCACTTTTAGATTGATGATGGAGATGAACTAACTGAATCCAATTTATACTA
AACAAATTCTGACGATCTTAGTTGTTTGGTTATAAACTTATTCTTTTCAGGAATGACTAA
AAACTGTTTACGATGATTTTACCAATAGTTTTATTGCATTACTTTCCAGGTTTCTATCAA
TCCCCTATAGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5925#0      ---TCGAGGCCAAGAATTCGGCACGAGGCCGATCCGTACAGCTCAGGATGTTTAGCATCT 57
consensus_5925#1      ATATATAGTTATCGTCCTGACCATCTATCCGATCCGTACAGCTCAGGATGTTTAGCATCT 60
                         *  **     *   *   **     ********************************

consensus_5925#0      TTCAATTATTTTTTTCATAATCGATGCTTGCGTCGTGTACTATTCTTTTCTCTTCGTGTA 117
consensus_5925#1      TTCAATTATTTTTTTCATAATCGATGCTTGCGTCGTGTACTATTCTTTTCTCTTCGTGTA 120
                      ************************************************************

consensus_5925#0      TTAAATGATTCACTTTTAGAT-GATGATGGAGATGAACTAACTGAATCCAATTTATACTA 176
consensus_5925#1      TTAAATGATTCACTTTTAGATTGATGATGGAGATGAACTAACTGAATCCAATTTATACTA 180
                      ********************* **************************************

consensus_5925#0      AACAAATTCTGACGATCTTAGTTGTTTGTTTATAAACTTATTCTTTTCAGGAATGACTAA 236
consensus_5925#1      AACAAATTCTGACGATCTTAGTTGTTTGGTTATAAACTTATTCTTTTCAGGAATGACTAA 240
                      **************************** *******************************

consensus_5925#0      AAACTGTTTACGATGATTT-ATCAATAGTTTTATTGCATTACTTTCCATGTTTCTATCAA 295
consensus_5925#1      AAACTGTTTACGATGATTTTACCAATAGTTTTATTGCATTACTTTCCAGGTTTCTATCAA 300
                      ******************* * ************************** ***********

consensus_5925#0      TCACCTATAAGCAGAGATACACGTACAGTTTATTATGCGTACTCGTAAGCAAATTATATT 355
consensus_5925#1      TCCCCTATA-GCAG---------------------------------------------- 313
                      ** ****** ****                                              

consensus_5925#0      TTTATCATCACCATTATACATATATGCATATACATATATACCGCACTATATTGATTCATC 415
consensus_5925#1      ------------------------------------------------------------
                                                                                  

consensus_5925#0      CTATATTTCAGGACTTTTGCATTTATAGTTTATTTTTTATTCCTCAAAATATATTTCATC 475
consensus_5925#1      ------------------------------------------------------------
                                                                                  

consensus_5925#0      ATACTAACAACTATAATACATTAAATGTTTTAGAATTCCTTTTCATTTCACTTGTATTCA 535
consensus_5925#1      ------------------------------------------------------------
                                                                                  

consensus_5925#0      CACACGACCAACATGTTAATATTTATAATT 565
consensus_5925#1      ------------------------------