These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 416 fasta sequence [AGAGATATTGAGGCAAAATAAATGAACAATGTGTGAAATAAATAATTACGGGATCAGTCGAAAGGAATGAGTTAGAACTACTCGACCAAGAGAAAAGCAAGAGACGATTATATGCACCGAATAAAATATAACGACAAAACG-AAACTAACAGCAAAAAGAAGAACACAAAATAAACATCGAATAGAGGAAAAAATATTGGAATAGATAATAAAATTCTACGGTTAATT-----HCA-TATCATCACG-TCATCAGCATCGATATCCTCAGTTGCTACGGGAGTAGCTTTCGCCTTCTCTACACCACGACTCTCTTCCTCTTGGTCATCATCATCTTCAATATTTACATAACCAGGCCATTCAGTATAATCATCCGAATCAATATAATCTTGATTCTCAGTGATTCGATGTATACCAGAACGTAA] [-] EMBL BE519450 [AGAGATATTGAGGCAAAATAAATGAACAATGTGTGAAATAAATAATTACGGGATCAGTCGAAAGGAATGAGTTAGAACTACTCGACCAAGAGAAAAGCAAGAGACGATTATATGCACCGAATAAAATATAACGACAAAACG AAACTAACAGCAAAAAGAAGAACACAAAATAAACATCGAATAGAGGAAAAAATATTGGAATAGATAATAAAATTCTACGGTTAATT HCA TATCATCACG TCATCAGCATCGATATCCTCAGTTGCTACGGGAGTAGCTTTCGCCTTCTCTACACCACGACTC ] [+] EMBL CD170914 [ AATGAGTTAGAACTACTCGACC AGAGAAAAGCAAGAGACGATTATATGCACCGAATAAAATATAACGACAAAACGAAAACTAACAGCAAAAAGAAGAACACAAAATAAACATCGAATAGAG AAAAATATT GAATAGATAAT AAATTCTAC GTTAATTCATTGTCATTATCATCACGTTCATCAGCATCGATATCCTCAGTTGCTACGGGAGTAGTTTTCGCCTTCTCTACACCACGACTCTCTTCCTCTTGGTCATCATCATCTTCAATATTTACATAACCAGGCCATTCAGTATAATCATCCGAATCAATATAATCTTGATTCTCAGTGATTCGATGTATACCAGAACGTAA] consensusID : consensus_5926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [AATAATTATGGAGATTTCAACTACAAAACAACCACGTGTCAATGAGCTAATCACATTGCGTCGTGTTGAAACAATCACAGATGCTGTTTTTCTGCTTTTGCATGGTATTTCTTTAGCTAAAGGACAAGGTACTCCACTTCTACGTTCTGGTATACATCGAATTACTGAGAATCAAGATTATATTGATTCGGATGATTATACTGAATGACCTGGGGGGATAATTTGAAGTCAGGTGAAGTGGAAATTCTAGGAAGTGTTACAGAT] [+] EMBL CD170935 [AATAATTATGGAGATTTCAACTACAAAACAACCACGTGTCAATGAGCTAATCACATTGCGTCGTGTTGAAACAATCACAGATGCTGTTTTTCTGCTTTTGCATGGTATTTCTTTAGCTAAAGGACAAGGTACTCCACTTCTACGTTCTGGTATACATCGAATTACTGAGAATCAAGATTATATTGATTCGGATGATTATACTGAATGACCTGGGGGGATAATTTGAAGTCAGGTGAAGTGGAAATTCTAGGAAGTGTTACAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5926#0 AGAGATATTGAGGCAAAATAAATGAACAATGTGTGAAATAAATAATTACGGGATCAGTCG 60 consensus_5926#1 ------------------------------------------------------------ consensus_5926#0 AAAGGAATGAGTTAGAACTACTCGACCAAGAGAAAAGCAAGAGACGATTATATGCACCGA 120 consensus_5926#1 ------------------------------------------------------------ consensus_5926#0 ATAAAATATAACGACAAAACGAAACTAACAGCAAAAAGAAGAACACAAAATAAACATCGA 180 consensus_5926#1 ---------AATAATTA--TGGAGATTTCAACTACAAAACAACCACGTGTCAATGAGCTA 49 ** * * * * * ** * * ** * * *** ** * * * consensus_5926#0 AT-AGAGGAAAAAATATTGGAATAGATAATAAAATTCTACGGTTAATTHCATATCATCAC 239 consensus_5926#1 ATCACATTGCGTCGTGTTGAAACAATCACAGATGCTGTTTTTCTGCTTTTGCATGGT-AT 108 ** * * * *** ** * * * * * * ** ** * * consensus_5926#0 GTCATCAGCATCGATATCCTCAGTTGCTACGGGAGTAGCTTTCGCCTTCTCTACACCACG 299 consensus_5926#1 TTCTTTAG---CTAAAGGACAAGGTACTCCACTTCTACGTT----CTGGTATACATCGAA 161 ** * ** * * * ** * ** * ** ** ** * **** * consensus_5926#0 ACTCTCTTCCTCTTGGTCATCATCATCTTCAATATTTACATAACCAGGCCATTCAGTATA 359 consensus_5926#1 TTACTGAGAATCAAGATTAT-ATTGATTCGGATGATTAT---ACTGAATGACCTGGGGGG 217 ** ** * * ** ** * ** *** ** * * consensus_5926#0 ATCATCCGAATCAATATAATCTTGATTCTCAGTGATTCGATGTATACCAGAACGTAA 416 consensus_5926#1 ATAATTTGAAGTCAGGTGAAGTGGAAATTCTAGGAAGTGTTACAGAT---------- 264 ** ** *** * * * * ** ** ** * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||