cluster # 5926

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Schistosoma mansoni
cluster # 5926 cluster # 5926 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5926#0 length = 416 sequences # 2

consensus_5926#1 length = 264 sequences # 1

consensusID : consensus_5926#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 416
fasta sequence

                              [AGAGATATTGAGGCAAAATAAATGAACAATGTGTGAAATAAATAATTACGGGATCAGTCGAAAGGAATGAGTTAGAACTACTCGACCAAGAGAAAAGCAAGAGACGATTATATGCACCGAATAAAATATAACGACAAAACG-AAACTAACAGCAAAAAGAAGAACACAAAATAAACATCGAATAGAGGAAAAAATATTGGAATAGATAATAAAATTCTACGGTTAATT-----HCA-TATCATCACG-TCATCAGCATCGATATCCTCAGTTGCTACGGGAGTAGCTTTCGCCTTCTCTACACCACGACTCTCTTCCTCTTGGTCATCATCATCTTCAATATTTACATAACCAGGCCATTCAGTATAATCATCCGAATCAATATAATCTTGATTCTCAGTGATTCGATGTATACCAGAACGTAA]

[-] EMBL BE519450             [AGAGATATTGAGGCAAAATAAATGAACAATGTGTGAAATAAATAATTACGGGATCAGTCGAAAGGAATGAGTTAGAACTACTCGACCAAGAGAAAAGCAAGAGACGATTATATGCACCGAATAAAATATAACGACAAAACG AAACTAACAGCAAAAAGAAGAACACAAAATAAACATCGAATAGAGGAAAAAATATTGGAATAGATAATAAAATTCTACGGTTAATT     HCA TATCATCACG TCATCAGCATCGATATCCTCAGTTGCTACGGGAGTAGCTTTCGCCTTCTCTACACCACGACTC                                                                                                                 ]
[+] EMBL CD170914             [                                                                 AATGAGTTAGAACTACTCGACC AGAGAAAAGCAAGAGACGATTATATGCACCGAATAAAATATAACGACAAAACGAAAACTAACAGCAAAAAGAAGAACACAAAATAAACATCGAATAGAG  AAAAATATT GAATAGATAAT AAATTCTAC GTTAATTCATTGTCATTATCATCACGTTCATCAGCATCGATATCCTCAGTTGCTACGGGAGTAGTTTTCGCCTTCTCTACACCACGACTCTCTTCCTCTTGGTCATCATCATCTTCAATATTTACATAACCAGGCCATTCAGTATAATCATCCGAATCAATATAATCTTGATTCTCAGTGATTCGATGTATACCAGAACGTAA]




>consensus_5926#0
AGAGATATTGAGGCAAAATAAATGAACAATGTGTGAAATAAATAATTACGGGATCAGTCG
AAAGGAATGAGTTAGAACTACTCGACCAAGAGAAAAGCAAGAGACGATTATATGCACCGA
ATAAAATATAACGACAAAACGAAACTAACAGCAAAAAGAAGAACACAAAATAAACATCGA
ATAGAGGAAAAAATATTGGAATAGATAATAAAATTCTACGGTTAATTHCATATCATCACG
TCATCAGCATCGATATCCTCAGTTGCTACGGGAGTAGCTTTCGCCTTCTCTACACCACGA
CTCTCTTCCTCTTGGTCATCATCATCTTCAATATTTACATAACCAGGCCATTCAGTATAA
TCATCCGAATCAATATAATCTTGATTCTCAGTGATTCGATGTATACCAGAACGTAA

consensusID : consensus_5926#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 264
fasta sequence

                              [AATAATTATGGAGATTTCAACTACAAAACAACCACGTGTCAATGAGCTAATCACATTGCGTCGTGTTGAAACAATCACAGATGCTGTTTTTCTGCTTTTGCATGGTATTTCTTTAGCTAAAGGACAAGGTACTCCACTTCTACGTTCTGGTATACATCGAATTACTGAGAATCAAGATTATATTGATTCGGATGATTATACTGAATGACCTGGGGGGATAATTTGAAGTCAGGTGAAGTGGAAATTCTAGGAAGTGTTACAGAT]

[+] EMBL CD170935             [AATAATTATGGAGATTTCAACTACAAAACAACCACGTGTCAATGAGCTAATCACATTGCGTCGTGTTGAAACAATCACAGATGCTGTTTTTCTGCTTTTGCATGGTATTTCTTTAGCTAAAGGACAAGGTACTCCACTTCTACGTTCTGGTATACATCGAATTACTGAGAATCAAGATTATATTGATTCGGATGATTATACTGAATGACCTGGGGGGATAATTTGAAGTCAGGTGAAGTGGAAATTCTAGGAAGTGTTACAGAT]




>consensus_5926#1
AATAATTATGGAGATTTCAACTACAAAACAACCACGTGTCAATGAGCTAATCACATTGCG
TCGTGTTGAAACAATCACAGATGCTGTTTTTCTGCTTTTGCATGGTATTTCTTTAGCTAA
AGGACAAGGTACTCCACTTCTACGTTCTGGTATACATCGAATTACTGAGAATCAAGATTA
TATTGATTCGGATGATTATACTGAATGACCTGGGGGGATAATTTGAAGTCAGGTGAAGTG
GAAATTCTAGGAAGTGTTACAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5926#0      AGAGATATTGAGGCAAAATAAATGAACAATGTGTGAAATAAATAATTACGGGATCAGTCG 60
consensus_5926#1      ------------------------------------------------------------
                                                                                  

consensus_5926#0      AAAGGAATGAGTTAGAACTACTCGACCAAGAGAAAAGCAAGAGACGATTATATGCACCGA 120
consensus_5926#1      ------------------------------------------------------------
                                                                                  

consensus_5926#0      ATAAAATATAACGACAAAACGAAACTAACAGCAAAAAGAAGAACACAAAATAAACATCGA 180
consensus_5926#1      ---------AATAATTA--TGGAGATTTCAACTACAAAACAACCACGTGTCAATGAGCTA 49
                               **  *  *   * *  *  ** * * ** *  * ***     **  * * *

consensus_5926#0      AT-AGAGGAAAAAATATTGGAATAGATAATAAAATTCTACGGTTAATTHCATATCATCAC 239
consensus_5926#1      ATCACATTGCGTCGTGTTGAAACAATCACAGATGCTGTTTTTCTGCTTTTGCATGGT-AT 108
                      ** * *        * *** ** *   *   *   * *     *  **    **  * * 

consensus_5926#0      GTCATCAGCATCGATATCCTCAGTTGCTACGGGAGTAGCTTTCGCCTTCTCTACACCACG 299
consensus_5926#1      TTCTTTAG---CTAAAGGACAAGGTACTCCACTTCTACGTT----CTGGTATACATCGAA 161
                       ** * **   * * *     ** * ** *     **  **    **  * **** *   

consensus_5926#0      ACTCTCTTCCTCTTGGTCATCATCATCTTCAATATTTACATAACCAGGCCATTCAGTATA 359
consensus_5926#1      TTACTGAGAATCAAGATTAT-ATTGATTCGGATGATTAT---ACTGAATGACCTGGGGGG 217
                         **     **  * * ** **    *   **  ***    **      *    *    

consensus_5926#0      ATCATCCGAATCAATATAATCTTGATTCTCAGTGATTCGATGTATACCAGAACGTAA 416
consensus_5926#1      ATAATTTGAAGTCAGGTGAAGTGGAAATTCTAGGAAGTGTTACAGAT---------- 264
                      ** **  ***   *  * *  * **   **   **   * *  * *