These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5934#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence [TGTACCGGTGTCTTTCCGGCAGAACACCGTCGCTTATTCTGTTTGTTCTGAACGGATTTTCCATATTGTTCGGGGTTGCTTTAATATCTCTTGGGATAGTATGTGTTGTTGACCATGGAAACATGTCTGAAGTTGTTGGAACCTCACTCTATTCGTCTGGAGTGTACATAGTCATCTTCTTAGGACTTGTTATCACAATCGTAGCCCTATGCGGTTACATTGCAGCTGATAAAGAAAATATCTGCTTGATTGTGTCAGTAGGATTTGCATAAAACCAAATTTCGAACTGCTCGCATTACTCTTGTTGATATCAGGAATAATAGTTTTGTCGTTTAAAAGTTCACTTGGTGAATCTGCTAGAAGTGTGATGGTAGCTTCGTTAAGGAATCACTATGGACGATATGGGATAATAACTGATGCATGGGACTTAGTACAGAGNNNNNNNNNNNNNNNNAAGTGGATAATAGTGGGTGGGGCGTGTATAACGGATCATGGTGGGACATGATTGTAAACTCGGATTTATACGAAACAAACACTAAATTGTCAGAGTCAAGTTTGTTTTACTTATTTGTTCCAGAATCTTGTTGTGTCAAGAGACTTGATGGATTGACTGGTTGGCCAGCAGTATGGA] [+] EMBL CD080902 [TGTACCGGTGTCTTTCCGGCAGAACACCGTCGCTTATTCTGTTTGTTCTGAACGGATTTTCCATATTGTTCGGGGTTGCTTTAATATCTCTTGGGATAGTATGTGTTGTTGACCATGGAAACATGTCTGAAGTTGTTGGAACCTCACTCTATTCGTCTGGAGTGTACATAGTCATCTTCTTAGGACTTGTTATCACAATCGTAGCCCTATGCGGTTACATTGCAGCTGATAAAGAAAATATCTGCTTGATTGTGTCAGTAGGATTTGCATAAAACCAAATTTCGAACTGCTCGCATTACTCTTGTTGATATCAGGAATAATAGTTTTGTCGTTTAAAAGTTCACTTGGTGAATCTGCTAGAAGTGTGATGGTAGCTTCGTTAAGGAATCACTATGGACGATATGGGATAATAACTGATGCATGGGACTTAGTACAGAGNNNNNNNNNNNNNNNNAAGTGGATAATAGTGGGTGGGGCGTGTATAACGGATCATGGTGGGACATGATTGTAAACTCGGATTTATACGAAACAAACACTAAATTGTCAGAGTCAAGTTTGTTTTACTTATTTGTTCCAGAATCTTGTTGTGTCAAGAGACTTGATGGATTGACTGGTTGGCCAGCAGTATGGA] consensusID : consensus_5934#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [GAGAAACTTACGTTGCTGTGGAGTGGATAATAGTGGGTGGGGCGTGTATAACGGATCATGGTGGGACATGATTGTAAACTCGGATTTATACGAAACAAACACTAAATTGTCAGAGTCAAGTTTGTTTTACTTATTTGTTCCAGAATCTTGTTGTGTCAAGAGACTTGATGGATTGACTGGTTGGCCAACTGAAATATACCGTGATAAGAGACGCTGCCAGACGTGGCAGTATGGACCACCGAATAAAAGCAGTGGACCCCACAACGACGCTATTTACTACGCAGGATGCTTTGAAAGTTTGAAAAGTTATATCGATAATTATGCTAAGGCTGTTGGCGTCTTGGCACTGATCGCATGTATTATCTTGATAAGCGCTTTGATCTGTGCATTGTTTTTGTTCCGTGATGCTAAACTCAATGCTCAGAGAAAACAAAGAATAAAAAGCTGGAGGAACCAGACACAAAATAAGTAGATTGATTAAATAGTTAACTGGGATGCATTGAAGAAAGAGTGAAGCTGTGATTATACATTAATGGAAATGATTTTAATCGTATGTATTTTATTTTCATACTAAAAAGTATTTAAAATATA] [-] EMBL CD074734 [GAGAAACTTACGTTGCTGTGGAGTGGATAATAGTGGGTGGGGCGTGTATAACGGATCATGGTGGGACATGATTGTAAACTCGGATTTATACGAAACAAACACTAAATTGTCAGAGTCAAGTTTGTTTTACTTATTTGTTCCAGAATCTTGTTGTGTCAAGAGACTTGATGGATTGACTGGTTGGCCAACTGAAATATACCGTGATAAGAGACGCTGCCAGACGTGGCAGTATGGACCACCGAATAAAAGCAGTGGACCCCACAACGACGCTATTTACTACGCAGGATGCTTTGAAAGTTTGAAAAGTTATATCGATAATTATGCTAAGGCTGTTGGCGTCTTGGCACTGATCGCATGTATTATCTTGATAAGCGCTTTGATCTGTGCATTGTTTTTGTTCCGTGATGCTAAACTCAATGCTCAGAGAAAACAAAGAATAAAAAGCTGGAGGAACCAGACACAAAATAAGTAGATTGATTAAATAGTTAACTGGGATGCATTGAAGAAAGAGTGAAGCTGTGATTATACATTAATGGAAATGATTTTAATCGTATGTATTTTATTTTCATACTAAAAAGTATTTAAAATATA] consensusID : consensus_5934#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [CATGGAAACATGTCTGAAGTTGTTGGAACCTCACTCTATTCGTCTGGAGTGTACATAGTCATCTNCTTAGGACTTGTTATCACAATCGTANCCCTATGCGGTTACATTGCAGCTGATAAANAAAATATCTGCTTGATTGTGTCATATATATTCATCTTATGCTTGCTCGCATTACTCTTGTTGATATCAGGAATAATAGTTTTGTCGTTTAAAAGTTCACTTGGTGAATCTGCTAGAAGTGTGATGGTAGCTTCGTTAAGGAATCACTATGGACNATATGGGATAATANCTGATGCATGG] [+] EMBL AA559494 [CATGGAAACATGTCTGAAGTTGTTGGAACCTCACTCTATTCGTCTGGAGTGTACATAGTCATCTNCTTAGGACTTGTTATCACAATCGTANCCCTATGCGGTTACATTGCAGCTGATAAANAAAATATCTGCTTGATTGTGTCATATATATTCATCTTATGCTTGCTCGCATTACTCTTGTTGATATCAGGAATAATAGTTTTGTCGTTTAAAAGTTCACTTGGTGAATCTGCTAGAAGTGTGATGGTAGCTTCGTTAAGGAATCACTATGGACNATATGGGATAATANCTGATGCATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5934#0 TGTACCGGTGTCTTTCCGGCAGAACACCGTCGCTTATTCTGTTTGTTCTGAACGGATTTT 60 consensus_5934#2 ------------------------------------------------------------ consensus_5934#1 -----------------------------GAGAAACTTACGTTGCTGTGGAGTGGATAAT 31 consensus_5934#0 CCATATTGTTCGGGGTTGCTTTAATATCTCTTGGGATAGTATGTGTTGTTGACCATG--- 117 consensus_5934#2 -----------------------------------------------------CATG--- 4 consensus_5934#1 AGTGGGTGGGGCGTGTATAACGGATCATGGTGGGACATGATTGTAAACTCGGATTTATAC 91 * consensus_5934#0 GAAACATGTCTGAAGTTGTTGGAACCTCACTCTATTCGTCTGGAGTGTACATAGTCATCT 177 consensus_5934#2 GAAACATGTCTGAAGTTGTTGGAACCTCACTCTATTCGTCTGGAGTGTACATAGTCATCT 64 consensus_5934#1 GAAACAAACACTAAATTGTCAGAGTCAAGTTTGTTTTACTTATTTGTTCCAGAATCTTGT 151 ****** ** **** ** * * ** * * ** * ** * * consensus_5934#0 TCTTAGGACTTGTTATCACAATCGTAGCCCTATGCGGTTACATTGCAGC-TGATAAAGAA 236 consensus_5934#2 NCTTAGGACTTGTTATCACAATCGTANCCCTATGCGGTTACATTGCAGC-TGATAAANAA 123 consensus_5934#1 TGTGTCAAGAGACTTGATGGATTGACTGGTTGGCCAACTGAAATATACCGTGATAAGAGA 211 * * * ** * * * * * * * * ****** * consensus_5934#0 AATATCTGCTTGATTGTGTCAGTAGGATTTGCATAAAACCAAATTTCGAACTGCTCGCAT 296 consensus_5934#2 AATATCTGCTTGATTGTGTCA----------TATATATTCATCTTATGC-TTGCTCGCAT 172 consensus_5934#1 CG---CTGCCAGAC-GTGGCAGTATGGAC--CACCGAATAAAAGCA-GTGGACCCCACAA 264 **** ** *** ** * * * * * * ** consensus_5934#0 TACTCTTGTTGATATCAGGAATAATAGTTTTGTCGTTTAAAAGTTCAC-TTGGTGAATCT 355 consensus_5934#2 TACTCTTGTTGATATCAGGAATAATAGTTTTGTCGTTTAAAAGTTCAC-TTGGTGAATCT 231 consensus_5934#1 CGACGCTATT--TACTACGCAGGATGCTTTGAAAGTTTGAAAAGTTATATCGATAATTAT 322 * ** ** * * * ** *** **** *** * * * * * * * * consensus_5934#0 GCTAGAAGTGTGATGGTAGCTTCGTTAA--GGAATCACTATGGACGATATGGGATAATAA 413 consensus_5934#2 GCTAGAAGTGTGATGGTAGCTTCGTTAA--GGAATCACTATGGACNATATGGGATAATAN 289 consensus_5934#1 GCTAAGGCTGTTGGCGTCTTGGCACTGATCGCATGTATTATCT-TGATAAGCGCTTTGAT 381 **** *** ** * * * * * * *** *** * * * * consensus_5934#0 CTGATGCATGGGACTTAGTACAGAGNNNNNNNNNNNNNNNNAAGTGGATA-ATAGTGGGT 472 consensus_5934#2 CTGATGCATGG------------------------------------------------- 300 consensus_5934#1 CTG-TGCATTGTTTTTGTTCCGTGATGCTAAACTCAATGCTCAGAGAAAACAAAGAATAA 440 *** ***** * consensus_5934#0 GGGGCGTGTATAACGGATCATGGTGGGACATGATTGTAAACTCGGATTTATACGAAACAA 532 consensus_5934#2 ------------------------------------------------------------ consensus_5934#1 AAAGCTGGAGGAACCAGACACAAAATAAGTAGATTGATTAAATAGTTAACTGGGATGCAT 500 consensus_5934#0 ACACTAAATTGTCAGAGTCAAGTTTGTTTTACTTATTTGTTCCAGAATCTTGTTGTGTCA 592 consensus_5934#2 ------------------------------------------------------------ consensus_5934#1 TGAAGAAAGAGTGAAGCTG----TGATTATACATTAATGGAAATGATTTTAATCGTATGT 556 consensus_5934#0 AGAGACTTGATGGATTGACTGGTTGGCCAGCAGTATGGA 631 consensus_5934#2 --------------------------------------- consensus_5934#1 ATTTTATTTTCATACTAAAAAGTATTTAAAATATA---- 591 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||