cluster # 5934

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Schistosoma mansoni
cluster # 5934 cluster # 5934 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5934#0 length = 631 sequences # 1

consensus_5934#1 length = 591 sequences # 1
consensus_5934#2 length = 300 sequences # 1

consensusID : consensus_5934#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 631
fasta sequence

                              [TGTACCGGTGTCTTTCCGGCAGAACACCGTCGCTTATTCTGTTTGTTCTGAACGGATTTTCCATATTGTTCGGGGTTGCTTTAATATCTCTTGGGATAGTATGTGTTGTTGACCATGGAAACATGTCTGAAGTTGTTGGAACCTCACTCTATTCGTCTGGAGTGTACATAGTCATCTTCTTAGGACTTGTTATCACAATCGTAGCCCTATGCGGTTACATTGCAGCTGATAAAGAAAATATCTGCTTGATTGTGTCAGTAGGATTTGCATAAAACCAAATTTCGAACTGCTCGCATTACTCTTGTTGATATCAGGAATAATAGTTTTGTCGTTTAAAAGTTCACTTGGTGAATCTGCTAGAAGTGTGATGGTAGCTTCGTTAAGGAATCACTATGGACGATATGGGATAATAACTGATGCATGGGACTTAGTACAGAGNNNNNNNNNNNNNNNNAAGTGGATAATAGTGGGTGGGGCGTGTATAACGGATCATGGTGGGACATGATTGTAAACTCGGATTTATACGAAACAAACACTAAATTGTCAGAGTCAAGTTTGTTTTACTTATTTGTTCCAGAATCTTGTTGTGTCAAGAGACTTGATGGATTGACTGGTTGGCCAGCAGTATGGA]

[+] EMBL CD080902             [TGTACCGGTGTCTTTCCGGCAGAACACCGTCGCTTATTCTGTTTGTTCTGAACGGATTTTCCATATTGTTCGGGGTTGCTTTAATATCTCTTGGGATAGTATGTGTTGTTGACCATGGAAACATGTCTGAAGTTGTTGGAACCTCACTCTATTCGTCTGGAGTGTACATAGTCATCTTCTTAGGACTTGTTATCACAATCGTAGCCCTATGCGGTTACATTGCAGCTGATAAAGAAAATATCTGCTTGATTGTGTCAGTAGGATTTGCATAAAACCAAATTTCGAACTGCTCGCATTACTCTTGTTGATATCAGGAATAATAGTTTTGTCGTTTAAAAGTTCACTTGGTGAATCTGCTAGAAGTGTGATGGTAGCTTCGTTAAGGAATCACTATGGACGATATGGGATAATAACTGATGCATGGGACTTAGTACAGAGNNNNNNNNNNNNNNNNAAGTGGATAATAGTGGGTGGGGCGTGTATAACGGATCATGGTGGGACATGATTGTAAACTCGGATTTATACGAAACAAACACTAAATTGTCAGAGTCAAGTTTGTTTTACTTATTTGTTCCAGAATCTTGTTGTGTCAAGAGACTTGATGGATTGACTGGTTGGCCAGCAGTATGGA]




>consensus_5934#0
TGTACCGGTGTCTTTCCGGCAGAACACCGTCGCTTATTCTGTTTGTTCTGAACGGATTTT
CCATATTGTTCGGGGTTGCTTTAATATCTCTTGGGATAGTATGTGTTGTTGACCATGGAA
ACATGTCTGAAGTTGTTGGAACCTCACTCTATTCGTCTGGAGTGTACATAGTCATCTTCT
TAGGACTTGTTATCACAATCGTAGCCCTATGCGGTTACATTGCAGCTGATAAAGAAAATA
TCTGCTTGATTGTGTCAGTAGGATTTGCATAAAACCAAATTTCGAACTGCTCGCATTACT
CTTGTTGATATCAGGAATAATAGTTTTGTCGTTTAAAAGTTCACTTGGTGAATCTGCTAG
AAGTGTGATGGTAGCTTCGTTAAGGAATCACTATGGACGATATGGGATAATAACTGATGC
ATGGGACTTAGTACAGAGNNNNNNNNNNNNNNNNAAGTGGATAATAGTGGGTGGGGCGTG
TATAACGGATCATGGTGGGACATGATTGTAAACTCGGATTTATACGAAACAAACACTAAA
TTGTCAGAGTCAAGTTTGTTTTACTTATTTGTTCCAGAATCTTGTTGTGTCAAGAGACTT
GATGGATTGACTGGTTGGCCAGCAGTATGGA

consensusID : consensus_5934#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [GAGAAACTTACGTTGCTGTGGAGTGGATAATAGTGGGTGGGGCGTGTATAACGGATCATGGTGGGACATGATTGTAAACTCGGATTTATACGAAACAAACACTAAATTGTCAGAGTCAAGTTTGTTTTACTTATTTGTTCCAGAATCTTGTTGTGTCAAGAGACTTGATGGATTGACTGGTTGGCCAACTGAAATATACCGTGATAAGAGACGCTGCCAGACGTGGCAGTATGGACCACCGAATAAAAGCAGTGGACCCCACAACGACGCTATTTACTACGCAGGATGCTTTGAAAGTTTGAAAAGTTATATCGATAATTATGCTAAGGCTGTTGGCGTCTTGGCACTGATCGCATGTATTATCTTGATAAGCGCTTTGATCTGTGCATTGTTTTTGTTCCGTGATGCTAAACTCAATGCTCAGAGAAAACAAAGAATAAAAAGCTGGAGGAACCAGACACAAAATAAGTAGATTGATTAAATAGTTAACTGGGATGCATTGAAGAAAGAGTGAAGCTGTGATTATACATTAATGGAAATGATTTTAATCGTATGTATTTTATTTTCATACTAAAAAGTATTTAAAATATA]

[-] EMBL CD074734             [GAGAAACTTACGTTGCTGTGGAGTGGATAATAGTGGGTGGGGCGTGTATAACGGATCATGGTGGGACATGATTGTAAACTCGGATTTATACGAAACAAACACTAAATTGTCAGAGTCAAGTTTGTTTTACTTATTTGTTCCAGAATCTTGTTGTGTCAAGAGACTTGATGGATTGACTGGTTGGCCAACTGAAATATACCGTGATAAGAGACGCTGCCAGACGTGGCAGTATGGACCACCGAATAAAAGCAGTGGACCCCACAACGACGCTATTTACTACGCAGGATGCTTTGAAAGTTTGAAAAGTTATATCGATAATTATGCTAAGGCTGTTGGCGTCTTGGCACTGATCGCATGTATTATCTTGATAAGCGCTTTGATCTGTGCATTGTTTTTGTTCCGTGATGCTAAACTCAATGCTCAGAGAAAACAAAGAATAAAAAGCTGGAGGAACCAGACACAAAATAAGTAGATTGATTAAATAGTTAACTGGGATGCATTGAAGAAAGAGTGAAGCTGTGATTATACATTAATGGAAATGATTTTAATCGTATGTATTTTATTTTCATACTAAAAAGTATTTAAAATATA]




>consensus_5934#1
GAGAAACTTACGTTGCTGTGGAGTGGATAATAGTGGGTGGGGCGTGTATAACGGATCATG
GTGGGACATGATTGTAAACTCGGATTTATACGAAACAAACACTAAATTGTCAGAGTCAAG
TTTGTTTTACTTATTTGTTCCAGAATCTTGTTGTGTCAAGAGACTTGATGGATTGACTGG
TTGGCCAACTGAAATATACCGTGATAAGAGACGCTGCCAGACGTGGCAGTATGGACCACC
GAATAAAAGCAGTGGACCCCACAACGACGCTATTTACTACGCAGGATGCTTTGAAAGTTT
GAAAAGTTATATCGATAATTATGCTAAGGCTGTTGGCGTCTTGGCACTGATCGCATGTAT
TATCTTGATAAGCGCTTTGATCTGTGCATTGTTTTTGTTCCGTGATGCTAAACTCAATGC
TCAGAGAAAACAAAGAATAAAAAGCTGGAGGAACCAGACACAAAATAAGTAGATTGATTA
AATAGTTAACTGGGATGCATTGAAGAAAGAGTGAAGCTGTGATTATACATTAATGGAAAT
GATTTTAATCGTATGTATTTTATTTTCATACTAAAAAGTATTTAAAATATA

consensusID : consensus_5934#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [CATGGAAACATGTCTGAAGTTGTTGGAACCTCACTCTATTCGTCTGGAGTGTACATAGTCATCTNCTTAGGACTTGTTATCACAATCGTANCCCTATGCGGTTACATTGCAGCTGATAAANAAAATATCTGCTTGATTGTGTCATATATATTCATCTTATGCTTGCTCGCATTACTCTTGTTGATATCAGGAATAATAGTTTTGTCGTTTAAAAGTTCACTTGGTGAATCTGCTAGAAGTGTGATGGTAGCTTCGTTAAGGAATCACTATGGACNATATGGGATAATANCTGATGCATGG]

[+] EMBL AA559494             [CATGGAAACATGTCTGAAGTTGTTGGAACCTCACTCTATTCGTCTGGAGTGTACATAGTCATCTNCTTAGGACTTGTTATCACAATCGTANCCCTATGCGGTTACATTGCAGCTGATAAANAAAATATCTGCTTGATTGTGTCATATATATTCATCTTATGCTTGCTCGCATTACTCTTGTTGATATCAGGAATAATAGTTTTGTCGTTTAAAAGTTCACTTGGTGAATCTGCTAGAAGTGTGATGGTAGCTTCGTTAAGGAATCACTATGGACNATATGGGATAATANCTGATGCATGG]




>consensus_5934#2
CATGGAAACATGTCTGAAGTTGTTGGAACCTCACTCTATTCGTCTGGAGTGTACATAGTC
ATCTNCTTAGGACTTGTTATCACAATCGTANCCCTATGCGGTTACATTGCAGCTGATAAA
NAAAATATCTGCTTGATTGTGTCATATATATTCATCTTATGCTTGCTCGCATTACTCTTG
TTGATATCAGGAATAATAGTTTTGTCGTTTAAAAGTTCACTTGGTGAATCTGCTAGAAGT
GTGATGGTAGCTTCGTTAAGGAATCACTATGGACNATATGGGATAATANCTGATGCATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5934#0      TGTACCGGTGTCTTTCCGGCAGAACACCGTCGCTTATTCTGTTTGTTCTGAACGGATTTT 60
consensus_5934#2      ------------------------------------------------------------
consensus_5934#1      -----------------------------GAGAAACTTACGTTGCTGTGGAGTGGATAAT 31
                                                                                  

consensus_5934#0      CCATATTGTTCGGGGTTGCTTTAATATCTCTTGGGATAGTATGTGTTGTTGACCATG--- 117
consensus_5934#2      -----------------------------------------------------CATG--- 4
consensus_5934#1      AGTGGGTGGGGCGTGTATAACGGATCATGGTGGGACATGATTGTAAACTCGGATTTATAC 91
                                                                             *    

consensus_5934#0      GAAACATGTCTGAAGTTGTTGGAACCTCACTCTATTCGTCTGGAGTGTACATAGTCATCT 177
consensus_5934#2      GAAACATGTCTGAAGTTGTTGGAACCTCACTCTATTCGTCTGGAGTGTACATAGTCATCT 64
consensus_5934#1      GAAACAAACACTAAATTGTCAGAGTCAAGTTTGTTTTACTTATTTGTTCCAGAATCTTGT 151
                      ******      ** ****  **  *    *   **    *      * ** * ** * *

consensus_5934#0      TCTTAGGACTTGTTATCACAATCGTAGCCCTATGCGGTTACATTGCAGC-TGATAAAGAA 236
consensus_5934#2      NCTTAGGACTTGTTATCACAATCGTANCCCTATGCGGTTACATTGCAGC-TGATAAANAA 123
consensus_5934#1      TGTGTCAAGAGACTTGATGGATTGACTGGTTGGCCAACTGAAATATACCGTGATAAGAGA 211
                        *    *     *      ** *      *   *   *  * *  * * ******   *

consensus_5934#0      AATATCTGCTTGATTGTGTCAGTAGGATTTGCATAAAACCAAATTTCGAACTGCTCGCAT 296
consensus_5934#2      AATATCTGCTTGATTGTGTCA----------TATATATTCATCTTATGC-TTGCTCGCAT 172
consensus_5934#1      CG---CTGCCAGAC-GTGGCAGTATGGAC--CACCGAATAAAAGCA-GTGGACCCCACAA 264
                           ****  **  *** **           *   *   *      *     * * ** 

consensus_5934#0      TACTCTTGTTGATATCAGGAATAATAGTTTTGTCGTTTAAAAGTTCAC-TTGGTGAATCT 355
consensus_5934#2      TACTCTTGTTGATATCAGGAATAATAGTTTTGTCGTTTAAAAGTTCAC-TTGGTGAATCT 231
consensus_5934#1      CGACGCTATT--TACTACGCAGGATGCTTTGAAAGTTTGAAAAGTTATATCGATAATTAT 322
                            * **  **  * * *  **  ***    **** ***  * *  * * * * * *

consensus_5934#0      GCTAGAAGTGTGATGGTAGCTTCGTTAA--GGAATCACTATGGACGATATGGGATAATAA 413
consensus_5934#2      GCTAGAAGTGTGATGGTAGCTTCGTTAA--GGAATCACTATGGACNATATGGGATAATAN 289
consensus_5934#1      GCTAAGGCTGTTGGCGTCTTGGCACTGATCGCATGTATTATCT-TGATAAGCGCTTTGAT 381
                      ****    ***    **     *  * *  * *   * ***     *** * * *   * 

consensus_5934#0      CTGATGCATGGGACTTAGTACAGAGNNNNNNNNNNNNNNNNAAGTGGATA-ATAGTGGGT 472
consensus_5934#2      CTGATGCATGG------------------------------------------------- 300
consensus_5934#1      CTG-TGCATTGTTTTTGTTCCGTGATGCTAAACTCAATGCTCAGAGAAAACAAAGAATAA 440
                      *** ***** *                                                 

consensus_5934#0      GGGGCGTGTATAACGGATCATGGTGGGACATGATTGTAAACTCGGATTTATACGAAACAA 532
consensus_5934#2      ------------------------------------------------------------
consensus_5934#1      AAAGCTGGAGGAACCAGACACAAAATAAGTAGATTGATTAAATAGTTAACTGGGATGCAT 500
                                                                                  

consensus_5934#0      ACACTAAATTGTCAGAGTCAAGTTTGTTTTACTTATTTGTTCCAGAATCTTGTTGTGTCA 592
consensus_5934#2      ------------------------------------------------------------
consensus_5934#1      TGAAGAAAGAGTGAAGCTG----TGATTATACATTAATGGAAATGATTTTAATCGTATGT 556
                                                                                  

consensus_5934#0      AGAGACTTGATGGATTGACTGGTTGGCCAGCAGTATGGA 631
consensus_5934#2      ---------------------------------------
consensus_5934#1      ATTTTATTTTCATACTAAAAAGTATTTAAAATATA---- 591