cluster # 5938

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Schistosoma mansoni
cluster # 5938 cluster # 5938 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5938#0 length = 647 sequences # 2

consensus_5938#1 length = 502 sequences # 1

consensusID : consensus_5938#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 647
fasta sequence

                              [ACGAGGTAAAGTGAATAATGCTGTGATGAAATCAAGGGATTTAGTAGGTCGAATTCGTTCAGTATCATTATATTTCAATAATATAGAGACGGATTTATTTAAAAATGCTGGATTAGCTTGATTTAATAATCCAGTTAGAAAATAATTATGGTTCCCGCCCAAATTGAATAAATTTAAACTTCCCATGTAATTGTCATAGTATTTATCATGTTCAAATATCAAGCGATGAATTGTGCATAGAGTAGGATCTTCTTGAATATCTTCATGTAATGTGATTGATTGAGTGAGTAAATTTTTCACGTTATGTGGTAATACATTTACTAATTCATAAAGACCATAAGTTTCAAACGCATCCATATCAGGAGTTCTAGGATGGATTGAATTGTCAATCTTATTTGAACCTAGTTTTTCTTCTTCTACCTAAAAATAAGTTTAACCGAAAATAAACAATAATAGTAGTATCATACAATCACAGGGAAAATCAAGATATCTTAACATAAAACTTGTATAGTAAACTCATACATCAAAGGTTGAGAATGAAGATAAGATTGAAAGAGATAGCTTATTTAACTAGACTGATTGTACTTGNTTACAGAAAGGATAAAAATAAGTTACCTGAAGTANATAATTTTAATTNTCAGCCACAC]

[-] EMBL CD071872             [ACGAGGTAAAGTGAATAATGCTGTGATGAAATCAAGGGATTTAGTAGGTCGAATTCGTTCAGTATCATTATATTTCAATAATATAGAGACGGATTTATTTAAAAATGCTGGATTAGCTTGATTTAATAATCCAGTTAGAAAATAATTATGGTTCCCGCCCAAATTGAATAAATTTAAACTTCCCATGTAATTGTCATAGTATTTATCATGTTCAAATATCAAGCGATGAATTGTGCATAGAGTAGGATCTTCTTGAATATCTTCATGTAATGTGATTGATTGAGTGAGTAAATTTTTCACGTTATGTGGTAATACATTTACTAATTCATAAAGACCATAAGTTTCAAACGCATCCATATCAGGAGTTCTAGGATGGATTGAATTGTCAATCTTATTTGAACCTAGTTT                                                                                                                                                                                                                                               ]
[+] EMBL CD065243             [                                                          TCAGTATCATTATATTTCAATAATATAGAGACGGATTTATTTAAAAATGCTGACTTAGCTTGATTTAATAATTCAGTTAGAAAATAATTATGGTTCCCGCCCAAATTGAATAAATTTAAACTTCCCATGTAATTGTCATAGTATTTATCATGTTCAAATATCAAGCGATGAATTGTGCATAGAATAGGATCTTCTTGAATATCTTCATGTAATGTGATTGATTGAGTGAGTAAATTTTTCACGTTATTTGGTAATACATTTACTAATTCATAAAGACCATAAGTTTCAAACGCATCCATATCTGGAGTTCTAGGATGGCTTGAATTGTCAATCTTATTTGAACCTAGTTTTTCTTCTTCTACCTAAAAATAAGTTTAACCGAAAATAAACAATAATAGTAGTATCATACAATCACAGGGAAAATCAAGATATCTTAACATAAAACTTGTATAGTAAACTCATACATCAAAGGTTGAGAATGAAGATAAGATTGAAAGAGATAGCTTATTTAACTAGACTGATTGTACTTGNTTACAGAAAGGATAAAAATAAGTTACCTGAAGTANATAATTTTAATTNTCAGCCACAC]




>consensus_5938#0
ACGAGGTAAAGTGAATAATGCTGTGATGAAATCAAGGGATTTAGTAGGTCGAATTCGTTC
AGTATCATTATATTTCAATAATATAGAGACGGATTTATTTAAAAATGCTGGATTAGCTTG
ATTTAATAATCCAGTTAGAAAATAATTATGGTTCCCGCCCAAATTGAATAAATTTAAACT
TCCCATGTAATTGTCATAGTATTTATCATGTTCAAATATCAAGCGATGAATTGTGCATAG
AGTAGGATCTTCTTGAATATCTTCATGTAATGTGATTGATTGAGTGAGTAAATTTTTCAC
GTTATGTGGTAATACATTTACTAATTCATAAAGACCATAAGTTTCAAACGCATCCATATC
AGGAGTTCTAGGATGGATTGAATTGTCAATCTTATTTGAACCTAGTTTTTCTTCTTCTAC
CTAAAAATAAGTTTAACCGAAAATAAACAATAATAGTAGTATCATACAATCACAGGGAAA
ATCAAGATATCTTAACATAAAACTTGTATAGTAAACTCATACATCAAAGGTTGAGAATGA
AGATAAGATTGAAAGAGATAGCTTATTTAACTAGACTGATTGTACTTGNTTACAGAAAGG
ATAAAAATAAGTTACCTGAAGTANATAATTTTAATTNTCAGCCACAC

consensusID : consensus_5938#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 502
fasta sequence

                              [ATGTAATGTGATTGATTGAGTGAGTAAATTTTTCACGTTATTTGGTAATACATTTACTAATTCATAAAGACCATAAGTTTCAAACGCATCCATATCTGGAGTTCTAGGATGGATTGAATTGTCAATATCTTATTTGAACCTAGTTTTTCTTCTTCACTTTTGTCTCGGTAATACTCTCTTTTCTTGGAACATTGATACATGTATCGATCTTATTTCTATTAACCGAAGGTATTGTGACTAATAATTCTTCAGGAGAATCAACATCCATCATAAATGTATACTTAGTATCACATGATGCGTTAGAAATTCCCTTGAATTTGTTGTGTATACCTTTATCAAGAAGGTCTGATGAGATAAATCCGATTTGTTCAGAAAGNCACCTTGATAGTATTCTCGTTTAAAACAAATTCAGATATACATTTTATCAACTCAGTTAGCTCTGCAGACGTGATGTTTAAAAAAGCTCCAAAAATAAGCGGAATTTGACTGGTTAGTATTAACC]

[-] EMBL CD130600             [ATGTAATGTGATTGATTGAGTGAGTAAATTTTTCACGTTATTTGGTAATACATTTACTAATTCATAAAGACCATAAGTTTCAAACGCATCCATATCTGGAGTTCTAGGATGGATTGAATTGTCAATATCTTATTTGAACCTAGTTTTTCTTCTTCACTTTTGTCTCGGTAATACTCTCTTTTCTTGGAACATTGATACATGTATCGATCTTATTTCTATTAACCGAAGGTATTGTGACTAATAATTCTTCAGGAGAATCAACATCCATCATAAATGTATACTTAGTATCACATGATGCGTTAGAAATTCCCTTGAATTTGTTGTGTATACCTTTATCAAGAAGGTCTGATGAGATAAATCCGATTTGTTCAGAAAGNCACCTTGATAGTATTCTCGTTTAAAACAAATTCAGATATACATTTTATCAACTCAGTTAGCTCTGCAGACGTGATGTTTAAAAAAGCTCCAAAAATAAGCGGAATTTGACTGGTTAGTATTAACC]




>consensus_5938#1
ATGTAATGTGATTGATTGAGTGAGTAAATTTTTCACGTTATTTGGTAATACATTTACTAA
TTCATAAAGACCATAAGTTTCAAACGCATCCATATCTGGAGTTCTAGGATGGATTGAATT
GTCAATATCTTATTTGAACCTAGTTTTTCTTCTTCACTTTTGTCTCGGTAATACTCTCTT
TTCTTGGAACATTGATACATGTATCGATCTTATTTCTATTAACCGAAGGTATTGTGACTA
ATAATTCTTCAGGAGAATCAACATCCATCATAAATGTATACTTAGTATCACATGATGCGT
TAGAAATTCCCTTGAATTTGTTGTGTATACCTTTATCAAGAAGGTCTGATGAGATAAATC
CGATTTGTTCAGAAAGNCACCTTGATAGTATTCTCGTTTAAAACAAATTCAGATATACAT
TTTATCAACTCAGTTAGCTCTGCAGACGTGATGTTTAAAAAAGCTCCAAAAATAAGCGGA
ATTTGACTGGTTAGTATTAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5938#0      ACGAGGTAAAGTGAATAATGCTGTGATGAAATCAAGGGATTTAGTAGGTCGAATTCGTTC 60
consensus_5938#1      ------------------------------------------------------------
                                                                                  

consensus_5938#0      AGTATCATTATATTTCAATAATATAGAGACGGATTTATTTAAAAATGCTGGATTAGCTTG 120
consensus_5938#1      ------------------------------------------------------------
                                                                                  

consensus_5938#0      ATTTAATAATCCAGTTAGAAAATAATTATGGTTCCCGCCCAAATTGAATAAATTTAAACT 180
consensus_5938#1      ------------------------------------------------------------
                                                                                  

consensus_5938#0      TCCCATGTAATTGTCATAGTATTTATCATGTTCAAATATCAAGCGATGAATTGTGCATAG 240
consensus_5938#1      ------------------------------------------------------------
                                                                                  

consensus_5938#0      AGTAGGATCTTCTTGAATATCTTCATGTAATGTGATTGATTGAGTGAGTAAATTTTTCAC 300
consensus_5938#1      ------------------------ATGTAATGTGATTGATTGAGTGAGTAAATTTTTCAC 36
                                              ************************************

consensus_5938#0      GTTATGTGGTAATACATTTACTAATTCATAAAGACCATAAGTTTCAAACGCATCCATATC 360
consensus_5938#1      GTTATTTGGTAATACATTTACTAATTCATAAAGACCATAAGTTTCAAACGCATCCATATC 96
                      ***** ******************************************************

consensus_5938#0      AGGAGTTCTAGGATGGATTGAATTGTCAAT--CTTATTTGAACCTAGTTTTTCTTCTTCT 418
consensus_5938#1      TGGAGTTCTAGGATGGATTGAATTGTCAATATCTTATTTGAACCTAGTTTTTCTTCTTCA 156
                       *****************************  *************************** 

consensus_5938#0      ACCTAAA---AATAAGTTTAACCGAAAATA-AACAATAATAGTAGTATCATACAATCACA 474
consensus_5938#1      CTTTTGTCTCGGTAATACTCTCTTTTCTTGGAACATTGATACATGTATCGATCTTATTTC 216
                         *        ***   *  *      *  **** * ***   *****   *       

consensus_5938#0      GGGAAAATCAAGATATCTTAACATAAAACTTGTATAGTAAACT--CATACATCAAAGGTT 532
consensus_5938#1      TATTAACCGAAGGTATTGTGACTAATAATTCTTCAGGAGAATCAACATCCATCATAAATG 276
                          **   *** ***  * **  * ** *  *   *  **    *** ***** *  * 

consensus_5938#0      GAGAATGAAGATAAGAT--TGAAAGAGATAGCTTATTTAACTAGACTGATTGTACTTGNT 590
consensus_5938#1      TATACTTAGTATCACATGATGCGTTAGA-AATTCCCTTGAATTTGTTGTGTATACCTTTA 335
                       * * * *  ** * **  **    *** *  *   ** * *    **  * *** *   

consensus_5938#0      TACAGAAAGGATAA--AAATAAGTT--ACCTGA--AGTANATAATTTTAATTNTCAGCCA 644
consensus_5938#1      TCAAGAAGGTCTGATGAGATAAATCCGATTTGTTCAGAAAGNCACCTTGATAGT-ATTCT 394
                      *  **** *  * *  * **** *   *  **   ** *    *  ** **  * *  * 

consensus_5938#0      CAC--------------------------------------------------------- 647
consensus_5938#1      CGTTTAAAACAAATTCAGATATACATTTTATCAACTCAGTTAGCTCTGCAGACGTGATGT 454
                      *                                                           

consensus_5938#0      ------------------------------------------------
consensus_5938#1      TTAAAAAAGCTCCAAAAATAAGCGGAATTTGACTGGTTAGTATTAACC 502