These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 647 fasta sequence [ACGAGGTAAAGTGAATAATGCTGTGATGAAATCAAGGGATTTAGTAGGTCGAATTCGTTCAGTATCATTATATTTCAATAATATAGAGACGGATTTATTTAAAAATGCTGGATTAGCTTGATTTAATAATCCAGTTAGAAAATAATTATGGTTCCCGCCCAAATTGAATAAATTTAAACTTCCCATGTAATTGTCATAGTATTTATCATGTTCAAATATCAAGCGATGAATTGTGCATAGAGTAGGATCTTCTTGAATATCTTCATGTAATGTGATTGATTGAGTGAGTAAATTTTTCACGTTATGTGGTAATACATTTACTAATTCATAAAGACCATAAGTTTCAAACGCATCCATATCAGGAGTTCTAGGATGGATTGAATTGTCAATCTTATTTGAACCTAGTTTTTCTTCTTCTACCTAAAAATAAGTTTAACCGAAAATAAACAATAATAGTAGTATCATACAATCACAGGGAAAATCAAGATATCTTAACATAAAACTTGTATAGTAAACTCATACATCAAAGGTTGAGAATGAAGATAAGATTGAAAGAGATAGCTTATTTAACTAGACTGATTGTACTTGNTTACAGAAAGGATAAAAATAAGTTACCTGAAGTANATAATTTTAATTNTCAGCCACAC] [-] EMBL CD071872 [ACGAGGTAAAGTGAATAATGCTGTGATGAAATCAAGGGATTTAGTAGGTCGAATTCGTTCAGTATCATTATATTTCAATAATATAGAGACGGATTTATTTAAAAATGCTGGATTAGCTTGATTTAATAATCCAGTTAGAAAATAATTATGGTTCCCGCCCAAATTGAATAAATTTAAACTTCCCATGTAATTGTCATAGTATTTATCATGTTCAAATATCAAGCGATGAATTGTGCATAGAGTAGGATCTTCTTGAATATCTTCATGTAATGTGATTGATTGAGTGAGTAAATTTTTCACGTTATGTGGTAATACATTTACTAATTCATAAAGACCATAAGTTTCAAACGCATCCATATCAGGAGTTCTAGGATGGATTGAATTGTCAATCTTATTTGAACCTAGTTT ] [+] EMBL CD065243 [ TCAGTATCATTATATTTCAATAATATAGAGACGGATTTATTTAAAAATGCTGACTTAGCTTGATTTAATAATTCAGTTAGAAAATAATTATGGTTCCCGCCCAAATTGAATAAATTTAAACTTCCCATGTAATTGTCATAGTATTTATCATGTTCAAATATCAAGCGATGAATTGTGCATAGAATAGGATCTTCTTGAATATCTTCATGTAATGTGATTGATTGAGTGAGTAAATTTTTCACGTTATTTGGTAATACATTTACTAATTCATAAAGACCATAAGTTTCAAACGCATCCATATCTGGAGTTCTAGGATGGCTTGAATTGTCAATCTTATTTGAACCTAGTTTTTCTTCTTCTACCTAAAAATAAGTTTAACCGAAAATAAACAATAATAGTAGTATCATACAATCACAGGGAAAATCAAGATATCTTAACATAAAACTTGTATAGTAAACTCATACATCAAAGGTTGAGAATGAAGATAAGATTGAAAGAGATAGCTTATTTAACTAGACTGATTGTACTTGNTTACAGAAAGGATAAAAATAAGTTACCTGAAGTANATAATTTTAATTNTCAGCCACAC] consensusID : consensus_5938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [ATGTAATGTGATTGATTGAGTGAGTAAATTTTTCACGTTATTTGGTAATACATTTACTAATTCATAAAGACCATAAGTTTCAAACGCATCCATATCTGGAGTTCTAGGATGGATTGAATTGTCAATATCTTATTTGAACCTAGTTTTTCTTCTTCACTTTTGTCTCGGTAATACTCTCTTTTCTTGGAACATTGATACATGTATCGATCTTATTTCTATTAACCGAAGGTATTGTGACTAATAATTCTTCAGGAGAATCAACATCCATCATAAATGTATACTTAGTATCACATGATGCGTTAGAAATTCCCTTGAATTTGTTGTGTATACCTTTATCAAGAAGGTCTGATGAGATAAATCCGATTTGTTCAGAAAGNCACCTTGATAGTATTCTCGTTTAAAACAAATTCAGATATACATTTTATCAACTCAGTTAGCTCTGCAGACGTGATGTTTAAAAAAGCTCCAAAAATAAGCGGAATTTGACTGGTTAGTATTAACC] [-] EMBL CD130600 [ATGTAATGTGATTGATTGAGTGAGTAAATTTTTCACGTTATTTGGTAATACATTTACTAATTCATAAAGACCATAAGTTTCAAACGCATCCATATCTGGAGTTCTAGGATGGATTGAATTGTCAATATCTTATTTGAACCTAGTTTTTCTTCTTCACTTTTGTCTCGGTAATACTCTCTTTTCTTGGAACATTGATACATGTATCGATCTTATTTCTATTAACCGAAGGTATTGTGACTAATAATTCTTCAGGAGAATCAACATCCATCATAAATGTATACTTAGTATCACATGATGCGTTAGAAATTCCCTTGAATTTGTTGTGTATACCTTTATCAAGAAGGTCTGATGAGATAAATCCGATTTGTTCAGAAAGNCACCTTGATAGTATTCTCGTTTAAAACAAATTCAGATATACATTTTATCAACTCAGTTAGCTCTGCAGACGTGATGTTTAAAAAAGCTCCAAAAATAAGCGGAATTTGACTGGTTAGTATTAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5938#0 ACGAGGTAAAGTGAATAATGCTGTGATGAAATCAAGGGATTTAGTAGGTCGAATTCGTTC 60 consensus_5938#1 ------------------------------------------------------------ consensus_5938#0 AGTATCATTATATTTCAATAATATAGAGACGGATTTATTTAAAAATGCTGGATTAGCTTG 120 consensus_5938#1 ------------------------------------------------------------ consensus_5938#0 ATTTAATAATCCAGTTAGAAAATAATTATGGTTCCCGCCCAAATTGAATAAATTTAAACT 180 consensus_5938#1 ------------------------------------------------------------ consensus_5938#0 TCCCATGTAATTGTCATAGTATTTATCATGTTCAAATATCAAGCGATGAATTGTGCATAG 240 consensus_5938#1 ------------------------------------------------------------ consensus_5938#0 AGTAGGATCTTCTTGAATATCTTCATGTAATGTGATTGATTGAGTGAGTAAATTTTTCAC 300 consensus_5938#1 ------------------------ATGTAATGTGATTGATTGAGTGAGTAAATTTTTCAC 36 ************************************ consensus_5938#0 GTTATGTGGTAATACATTTACTAATTCATAAAGACCATAAGTTTCAAACGCATCCATATC 360 consensus_5938#1 GTTATTTGGTAATACATTTACTAATTCATAAAGACCATAAGTTTCAAACGCATCCATATC 96 ***** ****************************************************** consensus_5938#0 AGGAGTTCTAGGATGGATTGAATTGTCAAT--CTTATTTGAACCTAGTTTTTCTTCTTCT 418 consensus_5938#1 TGGAGTTCTAGGATGGATTGAATTGTCAATATCTTATTTGAACCTAGTTTTTCTTCTTCA 156 ***************************** *************************** consensus_5938#0 ACCTAAA---AATAAGTTTAACCGAAAATA-AACAATAATAGTAGTATCATACAATCACA 474 consensus_5938#1 CTTTTGTCTCGGTAATACTCTCTTTTCTTGGAACATTGATACATGTATCGATCTTATTTC 216 * *** * * * **** * *** ***** * consensus_5938#0 GGGAAAATCAAGATATCTTAACATAAAACTTGTATAGTAAACT--CATACATCAAAGGTT 532 consensus_5938#1 TATTAACCGAAGGTATTGTGACTAATAATTCTTCAGGAGAATCAACATCCATCATAAATG 276 ** *** *** * ** * ** * * * ** *** ***** * * consensus_5938#0 GAGAATGAAGATAAGAT--TGAAAGAGATAGCTTATTTAACTAGACTGATTGTACTTGNT 590 consensus_5938#1 TATACTTAGTATCACATGATGCGTTAGA-AATTCCCTTGAATTTGTTGTGTATACCTTTA 335 * * * * ** * ** ** *** * * ** * * ** * *** * consensus_5938#0 TACAGAAAGGATAA--AAATAAGTT--ACCTGA--AGTANATAATTTTAATTNTCAGCCA 644 consensus_5938#1 TCAAGAAGGTCTGATGAGATAAATCCGATTTGTTCAGAAAGNCACCTTGATAGT-ATTCT 394 * **** * * * * **** * * ** ** * * ** ** * * * consensus_5938#0 CAC--------------------------------------------------------- 647 consensus_5938#1 CGTTTAAAACAAATTCAGATATACATTTTATCAACTCAGTTAGCTCTGCAGACGTGATGT 454 * consensus_5938#0 ------------------------------------------------ consensus_5938#1 TTAAAAAAGCTCCAAAAATAAGCGGAATTTGACTGGTTAGTATTAACC 502 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||