cluster # 5939

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Schistosoma mansoni
cluster # 5939 cluster # 5939 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5939#0 length = 424 sequences # 2

consensus_5939#1 length = 185 sequences # 1

consensusID : consensus_5939#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 424
fasta sequence

                              [TAAACATTCCAGGTTTTAACATGTCAACGACCTGTGCTGCCTAGTCTAACAAAGGGTAGTTTTTCCTGAAATGCTGATATCGAAAGCAGTATCATTCATTCGTAGATCACTTCAAATCAATGCAACCCGTGTTTATAGGTCATCGAAAGAATTGGTGGAAAGTGGTGAGTCAGCTATAACTCTTTCTCCCGATGGAGCGGTTGTTGTTTGTTGGCATCCAGTTAGAAAAGTTCCTTATGAGTGTACTAAACCTATTTCACATGACATTAAATCGCTACGCACTCCAACTTCTCCTCTAAAAATCAATGTATCCGATACAATTATCAAAAATTCTGCAGAGCCTACTGTAGTAGAACTTTCAAAAGCTTTCGGTGTTCCATGGTTTCATTNTCGACCTAAGTATGTTAATATACAACACAATACG]

[+] EMBL AI976663             [TAAACATTCCAGGTTTTAACATGTCAACGACCTGTGCTGCCTAGTCTAACAAAGGGTAGTTTTTCCTGAAATGCTGATATCGAAAGCAGTATCATTCATTCGTAGATCACTTCAAATCAATGCAACCCGTGTTTATAGGTCATCGAAAGAATTGGTGGAAAGTGGTGAGTCAGCTATAACTCTTTCTCCCGATGGAGCGGTTGTTGTTTGTTGGCATCCAGTTAGAAAAGTTCCTTATGAGTGTACTAAACCTATTTCACATGACATTAAATCGCTACGCACTCCAACTTCTCCTCTAAAAATCAATGTATCCGATACAATTATCAAAAATTCTGCAGAGCCTACTGTAGTAGAACTTTCAAAAGCTTTCGGTGTTCCATGGTTTCATTNTCGACCTAAGTATGTTAATATACAACACAATACG]
[+] EMBL CD135185             [                                                       GTAGTTTTTCCTGAAATGCTGATATCGAAAGCAGTATCATTCATTCGTAGATCACTTCAAATCAATGCAACCCGTGTTTATAGGTCATCGAAAGAATTGGTGGAAAGTGGTGAGTCAGCTATAACTCTTTCTCCCGATGGAGCGGTTGTTGTTTGTTGGCATCCAGTTAGAAAAGTTCCTTATGAGTGTACTAAACCTATTTCACATGACATTAAATCGCTACGCACTCCAACTTCTCCTCTAAAAATCAATGTATCCGATACAATTATCAAAAATTCTGCAGA                                                                                     ]




>consensus_5939#0
TAAACATTCCAGGTTTTAACATGTCAACGACCTGTGCTGCCTAGTCTAACAAAGGGTAGT
TTTTCCTGAAATGCTGATATCGAAAGCAGTATCATTCATTCGTAGATCACTTCAAATCAA
TGCAACCCGTGTTTATAGGTCATCGAAAGAATTGGTGGAAAGTGGTGAGTCAGCTATAAC
TCTTTCTCCCGATGGAGCGGTTGTTGTTTGTTGGCATCCAGTTAGAAAAGTTCCTTATGA
GTGTACTAAACCTATTTCACATGACATTAAATCGCTACGCACTCCAACTTCTCCTCTAAA
AATCAATGTATCCGATACAATTATCAAAAATTCTGCAGAGCCTACTGTAGTAGAACTTTC
AAAAGCTTTCGGTGTTCCATGGTTTCATTNTCGACCTAAGTATGTTAATATACAACACAA
TACG

consensusID : consensus_5939#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 185
fasta sequence

                              [ACCTGTGCTGCCTAGTCTAACAAAGGGTAGTTTTTCCTGAAATGCTGATATCGAAAGCAGTATCATTCATCGGTAGATCACTTCAAATCATTGCACCCGGTGTTATATAGGTCACTGGAAAGAATTGGTGAAAAAGTGTGTGATGCGAGTATATCTCTCTCTCCCCGTATGAGAGCGGTTTGTTG]

[+] EMBL AI820462             [ACCTGTGCTGCCTAGTCTAACAAAGGGTAGTTTTTCCTGAAATGCTGATATCGAAAGCAGTATCATTCATCGGTAGATCACTTCAAATCATTGCACCCGGTGTTATATAGGTCACTGGAAAGAATTGGTGAAAAAGTGTGTGATGCGAGTATATCTCTCTCTCCCCGTATGAGAGCGGTTTGTTG]




>consensus_5939#1
ACCTGTGCTGCCTAGTCTAACAAAGGGTAGTTTTTCCTGAAATGCTGATATCGAAAGCAG
TATCATTCATCGGTAGATCACTTCAAATCATTGCACCCGGTGTTATATAGGTCACTGGAA
AGAATTGGTGAAAAAGTGTGTGATGCGAGTATATCTCTCTCTCCCCGTATGAGAGCGGTT
TGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5939#0      TAAACATTCCAGGTTTTAACATGTCAACGACCTGTGCTGCCTAGTCTAACAAAGGGTAGT 60
consensus_5939#1      -----------------------------ACCTGTGCTGCCTAGTCTAACAAAGGGTAGT 31
                                                   *******************************

consensus_5939#0      TTTTCCTGAAATGCTGATATCGAAAGCAGTATCATTCATTCGTAGATCACTTCAAATCAA 120
consensus_5939#1      TTTTCCTGAAATGCTGATATCGAAAGCAGTATCATTCATCGGTAGATCACTTCAAATCAT 91
                      ***************************************  ****************** 

consensus_5939#0      TGCAACCCGTGTT-TATAGGTCATCG-AAAGAATTGGTGGAAA-GTG-GTGAGTCAGCTA 176
consensus_5939#1      TGCACCCGGTGTTATATAGGTCACTGGAAAGAATTGGTGAAAAAGTGTGTGATGCGAGTA 151
                      **** ** ***** *********  * ************ *** *** ****  *   **

consensus_5939#0      TAACTCTTTCTCCCGATGGAGCGGTTGTTGTTTGTTGGCATCCAGTTAGAAAAGTTCCTT 236
consensus_5939#1      TATCTCTCTCTCCCCGTATGAGAGCGGTTTGTTG-------------------------- 185
                      ** **** ******  *      *  ***  ***                          

consensus_5939#0      ATGAGTGTACTAAACCTATTTCACATGACATTAAATCGCTACGCACTCCAACTTCTCCTC 296
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      TAAAAATCAATGTATCCGATACAATTATCAAAAATTCTGCAGAGCCTACTGTAGTAGAAC 356
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      TTTCAAAAGCTTTCGGTGTTCCATGGTTTCATTNTCGACCTAAGTATGTTAATATACAAC 416
consensus_5939#1      ------------------------------------------------------------
                                                                                  

consensus_5939#0      ACAATACG 424
consensus_5939#1      --------