These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5939#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 424 fasta sequence [TAAACATTCCAGGTTTTAACATGTCAACGACCTGTGCTGCCTAGTCTAACAAAGGGTAGTTTTTCCTGAAATGCTGATATCGAAAGCAGTATCATTCATTCGTAGATCACTTCAAATCAATGCAACCCGTGTTTATAGGTCATCGAAAGAATTGGTGGAAAGTGGTGAGTCAGCTATAACTCTTTCTCCCGATGGAGCGGTTGTTGTTTGTTGGCATCCAGTTAGAAAAGTTCCTTATGAGTGTACTAAACCTATTTCACATGACATTAAATCGCTACGCACTCCAACTTCTCCTCTAAAAATCAATGTATCCGATACAATTATCAAAAATTCTGCAGAGCCTACTGTAGTAGAACTTTCAAAAGCTTTCGGTGTTCCATGGTTTCATTNTCGACCTAAGTATGTTAATATACAACACAATACG] [+] EMBL AI976663 [TAAACATTCCAGGTTTTAACATGTCAACGACCTGTGCTGCCTAGTCTAACAAAGGGTAGTTTTTCCTGAAATGCTGATATCGAAAGCAGTATCATTCATTCGTAGATCACTTCAAATCAATGCAACCCGTGTTTATAGGTCATCGAAAGAATTGGTGGAAAGTGGTGAGTCAGCTATAACTCTTTCTCCCGATGGAGCGGTTGTTGTTTGTTGGCATCCAGTTAGAAAAGTTCCTTATGAGTGTACTAAACCTATTTCACATGACATTAAATCGCTACGCACTCCAACTTCTCCTCTAAAAATCAATGTATCCGATACAATTATCAAAAATTCTGCAGAGCCTACTGTAGTAGAACTTTCAAAAGCTTTCGGTGTTCCATGGTTTCATTNTCGACCTAAGTATGTTAATATACAACACAATACG] [+] EMBL CD135185 [ GTAGTTTTTCCTGAAATGCTGATATCGAAAGCAGTATCATTCATTCGTAGATCACTTCAAATCAATGCAACCCGTGTTTATAGGTCATCGAAAGAATTGGTGGAAAGTGGTGAGTCAGCTATAACTCTTTCTCCCGATGGAGCGGTTGTTGTTTGTTGGCATCCAGTTAGAAAAGTTCCTTATGAGTGTACTAAACCTATTTCACATGACATTAAATCGCTACGCACTCCAACTTCTCCTCTAAAAATCAATGTATCCGATACAATTATCAAAAATTCTGCAGA ] consensusID : consensus_5939#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 185 fasta sequence [ACCTGTGCTGCCTAGTCTAACAAAGGGTAGTTTTTCCTGAAATGCTGATATCGAAAGCAGTATCATTCATCGGTAGATCACTTCAAATCATTGCACCCGGTGTTATATAGGTCACTGGAAAGAATTGGTGAAAAAGTGTGTGATGCGAGTATATCTCTCTCTCCCCGTATGAGAGCGGTTTGTTG] [+] EMBL AI820462 [ACCTGTGCTGCCTAGTCTAACAAAGGGTAGTTTTTCCTGAAATGCTGATATCGAAAGCAGTATCATTCATCGGTAGATCACTTCAAATCATTGCACCCGGTGTTATATAGGTCACTGGAAAGAATTGGTGAAAAAGTGTGTGATGCGAGTATATCTCTCTCTCCCCGTATGAGAGCGGTTTGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5939#0 TAAACATTCCAGGTTTTAACATGTCAACGACCTGTGCTGCCTAGTCTAACAAAGGGTAGT 60 consensus_5939#1 -----------------------------ACCTGTGCTGCCTAGTCTAACAAAGGGTAGT 31 ******************************* consensus_5939#0 TTTTCCTGAAATGCTGATATCGAAAGCAGTATCATTCATTCGTAGATCACTTCAAATCAA 120 consensus_5939#1 TTTTCCTGAAATGCTGATATCGAAAGCAGTATCATTCATCGGTAGATCACTTCAAATCAT 91 *************************************** ****************** consensus_5939#0 TGCAACCCGTGTT-TATAGGTCATCG-AAAGAATTGGTGGAAA-GTG-GTGAGTCAGCTA 176 consensus_5939#1 TGCACCCGGTGTTATATAGGTCACTGGAAAGAATTGGTGAAAAAGTGTGTGATGCGAGTA 151 **** ** ***** ********* * ************ *** *** **** * ** consensus_5939#0 TAACTCTTTCTCCCGATGGAGCGGTTGTTGTTTGTTGGCATCCAGTTAGAAAAGTTCCTT 236 consensus_5939#1 TATCTCTCTCTCCCCGTATGAGAGCGGTTTGTTG-------------------------- 185 ** **** ****** * * *** *** consensus_5939#0 ATGAGTGTACTAAACCTATTTCACATGACATTAAATCGCTACGCACTCCAACTTCTCCTC 296 consensus_5939#1 ------------------------------------------------------------ consensus_5939#0 TAAAAATCAATGTATCCGATACAATTATCAAAAATTCTGCAGAGCCTACTGTAGTAGAAC 356 consensus_5939#1 ------------------------------------------------------------ consensus_5939#0 TTTCAAAAGCTTTCGGTGTTCCATGGTTTCATTNTCGACCTAAGTATGTTAATATACAAC 416 consensus_5939#1 ------------------------------------------------------------ consensus_5939#0 ACAATACG 424 consensus_5939#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||