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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[TGCTGTGATGAATAACTAACGATTTGAGATGTTCATGATGATGATGATGATGATGTACGACCCTGATATGCTTAAAAATTGTAAACACTGTGATCTTTCGTACACCTTTGTTCCATATCATCATTGCTATCTATGTGTAAACTTGAAATTGATTACATATTTCTCTCTTTTCTTTTTCCGTCCCTTCGTTGTAACTTTCTTTTTAAACTTGTTTATTGATTTTTATCAGCTAATAGATGATGCAACATTTGTGTATCGATGTAAGTACAATCTCGTCGGCTCTCTTTTTCTCATAGATCTGGCATGTTCCATTCAAAATATTGAACTCTGAAAAATAGTTTAACAATTATTATTTGTCAAGACTGTTGTTACTGCCACAGGCCATACATACTACTACTAGTACTACTAGTACTACTATTACCTATGCTACTGTCATCAAATAAAAAACACACCAAGTGATTATGATGCCTGTAATGTTCGCGTGTCTGTGTGTGTATGTGTGTAAGTGGGGTACCCACTATTTTATTCTTATCGATCTAAACGTATCAAAATATATATATATATTCATGGTGNTNCTTGATCTTGAAAATAGTGNGTACCATTTATGTGCTCTTCTAAGAAGAAACCTTTATTATATNGCATGGNATNNCTGTGATAAT]
[+] EMBL CD081877 [TGCTGTGATGAATAACTAACGATTTGAGATGTTCATGATGATGATGATGATGATGTACGACCCTGATATGCTTAAAAATTGTAAACACTGTGATCTTTCGTACACCTTTGTTCCATATCATCATTGCTATCTATGTGTAAACTTGAAATTGATTACATATTTCTCTCTTTTCTTTTTCCGTCCCTTCGTTGTAACTTTCTTTTTAAACTTGTTTATTGATTTTTATCAGCTAATAGATGATGCAACATTTGTGTATCGATGTAAGTACAATCTCGTCGGCTCTCTTTTTCTCATAGATCTGGCATGTTCCATTCAAAATATTGAACTCTGAAAAATAGTTTAACAATTATTATTTGTCAAGACTGTTGTTACTGCCACAGGCCATACATACTACTACTAGTACTACTAGTACTACTATTACCTATGCTACTGTCATCAAATAAAAAACACACCAAGTGATTATGATGCCTGTAATGTTCGCGTGTCTGTGTGTGTATGTGTGTAAGTGGGGTACCCACTATTTTATTCTTATCGATCTAAACGTATCAAAATATATATATATATTCATGGTGNTNCTTGATCTTGAAAATAGTGNGTACCATTTATGTGCTCTTCTAAGAAGAAACCTTTATTATATNGCATGGNATNNCTGTGATAAT]
consensusID : consensus_5945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 587 fasta sequence
[GATCTTTCGTACACCTTTGTTCCATATCATCATTGCTATCTATGTGTAAACTTGAAATTGATTACATATTTCTCTCTTTTCTTTTTCCGTCCCTTCGTTGTAACTTTCTTTTTAAACTTGTTTATTGATTTTTATCAGCTAATAGATGATGCAACATTTGTGTATCGATGTAAGTACAATCTCGTCGGCTCTCTTTTTCTCATAGATCTGGCATGTTCCATTCAAAATATTGAACTCTG-AAAAATAGTTTAACAATTATTATTTG-TCAAGACTGTTG-TTACTGCCACAGGCCATACATACTACTACTAGTACTACTAGTACTACTATTACCTATGCTACTGTCATCAAATAAAAAACACACAAAGTGATTATGATGCCTGTAATGTTCGCGTGTCTGTGTGTGTATGTGTGTAAGTGGGGTACCCACTATTTTATTCTTATCGATCTAACGTAATCAAAATTATATATATATATTCATGTTGTTTCTTGATCTTTGAATAAGTTGTGTACCATTTATGTGGCTCTTCCTAAGAAAGAAAACCTTTTATTTATTATTGTCATGGTAATTCCTTGTTGAATAAATTCAT]
[-] EMBL CD075586 [GATCTTTCGTACACCTTTGTTCCATATCATCATTGCTATCTATGTGTAAACTTGAAATTGATTACATATTTCTCTCTTTTCTTTTTCCGTCCCTTCGTTGTAACTTTCTTTTTAAACTTGTTTATTGATTTTTATCAGCTAATAGATGATGCAACATTTGTGTATCGATGTAAGTACAATCTCGTCGGCTCTCTTTTTCTCATAGATCTGGCATGTTCCATTCAAAATATTGAACTCTG AAAAATAGTTTAACAATTATTATTTG TCAAGACTGTTG TTACTGCCACAGGCCATACATACTACTACTAGTACTACTAGTACTACTATTACCTATGCTACTGTCATCAAATAAAAAACACACAAAGTGATTATGATGCCTGTAATGTTCGCGTGTCTGTGTGTGTATGTGTGTAAGTGGGGTACCCACTATTTTATTCTTATCGATCTAACGTAATCAAAATTATATATATATATTCATGTTGTTTCTTGATCTTTGAATAAGTTGTGTACCATTTATGTGGCTCTTCCTAAGAAAGAAAACCTTTTATTTATTATTGTCATGGTAATTCCTTGTTGAATAAATTCAT]
[+] EMBL SM856 [ nCCANACAAAATATTGAACTCTGAAAAAATAGCTTAACAATTATTANTCGNTCAAGACTGTTGNTTACTGCCACAGGNCATACATACTACTACTAGTACTACTAGTATTACTATTACCTATGCTACTGTCATCAAATAAAAAACACACAAAGTGATTATGATGTCTGTAATGTTCGCGTGTCTGTGTGTGTATGTGTGTAAGTGGGGNACCCACTATTTTATTCTTATCGATCTAACGTAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5945#0 TGCTGTGATGAATAACTAACGATTTGAGATGTTCATGATGATGATGATGATGATGTACGA 60
consensus_5945#1 ------------------------------------------------------------
consensus_5945#0 CCCTGATATGCTTAAAAATTGTAAACACTGTGATCTTTCGTACACCTTTGTTCCATATCA 120
consensus_5945#1 -------------------------------GATCTTTCGTACACCTTTGTTCCATATCA 29
*****************************
consensus_5945#0 TCATTGCTATCTATGTGTAAACTTGAAATTGATTACATATTTCTCTCTTTTCTTTTTCCG 180
consensus_5945#1 TCATTGCTATCTATGTGTAAACTTGAAATTGATTACATATTTCTCTCTTTTCTTTTTCCG 89
************************************************************
consensus_5945#0 TCCCTTCGTTGTAACTTTCTTTTTAAACTTGTTTATTGATTTTTATCAGCTAATAGATGA 240
consensus_5945#1 TCCCTTCGTTGTAACTTTCTTTTTAAACTTGTTTATTGATTTTTATCAGCTAATAGATGA 149
************************************************************
consensus_5945#0 TGCAACATTTGTGTATCGATGTAAGTACAATCTCGTCGGCTCTCTTTTTCTCATAGATCT 300
consensus_5945#1 TGCAACATTTGTGTATCGATGTAAGTACAATCTCGTCGGCTCTCTTTTTCTCATAGATCT 209
************************************************************
consensus_5945#0 GGCATGTTCCATTCAAAATATTGAACTCTGAAAAATAGTTTAACAATTATTATTTGTCAA 360
consensus_5945#1 GGCATGTTCCATTCAAAATATTGAACTCTGAAAAATAGTTTAACAATTATTATTTGTCAA 269
************************************************************
consensus_5945#0 GACTGTTGTTACTGCCACAGGCCATACATACTACTACTAGTACTACTAGTACTACTATTA 420
consensus_5945#1 GACTGTTGTTACTGCCACAGGCCATACATACTACTACTAGTACTACTAGTACTACTATTA 329
************************************************************
consensus_5945#0 CCTATGCTACTGTCATCAAATAAAAAACACACCAAGTGATTATGATGCCTGTAATGTTCG 480
consensus_5945#1 CCTATGCTACTGTCATCAAATAAAAAACACACAAAGTGATTATGATGCCTGTAATGTTCG 389
******************************** ***************************
consensus_5945#0 CGTGTCTGTGTGTGTATGTGTGTAAGTGGGGTACCCACTATTTTATTCTTATCGATCTAA 540
consensus_5945#1 CGTGTCTGTGTGTGTATGTGTGTAAGTGGGGTACCCACTATTTTATTCTTATCGATCTAA 449
************************************************************
consensus_5945#0 ACGTATCAAAAT-ATATATATATATTCATGGTGNTNCTTGATCTTGAAAATAGT-GNGTA 598
consensus_5945#1 CGTAATCAAAATTATATATATATATTCATGTTGTTTCTTGATCTTTGAATAAGTTGTGTA 509
******** ***************** ** * ********* ** *** * ***
consensus_5945#0 CCATTTATGTG-CTCTTC-TAAGAAG--AAACCTTTATTATATNG----CATGGNATNNC 650
consensus_5945#1 CCATTTATGTGGCTCTTCCTAAGAAAGAAAACCTTTTATTTATTATTGTCATGGTAATTC 569
*********** ****** ****** ******** * *** ***** * *
consensus_5945#0 TGTGATAAT--------- 659
consensus_5945#1 CTTGTTGAATAAATTCAT 587
** * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||