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Schistosoma mansoni
cluster # 5951 cluster # 5951       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5951#0 length = 919 sequences # 2  
consensus_5951#1 length = 563 sequences # 1  

consensusID : consensus_5951#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 919
fasta sequence
                              [CTCGCGGCCAAAAATTCGGCACGAGGCGTGGACTAGCACTTGTATTCCGTGAACAATCTTTGATGGCAGCAAGACAAATCCGCGAACCATGTGCAAACGAACTGGCACCACATTTGCTAAATATCATAATCACAAAAATGACTGATGTGACAGCAAAAAATTGTAAGCAGTTACCAGCAACAAATAACGCACCGATTACTTCAAGTTTCAGTAAAATATGGCCAATAGGATCTAATACAAATCAGCAACAACAAACTATCGACAAAGAATCATCTATTCCAAATAATAACAACACAAACTCATCATCCCCAACATCAATACATAACAACTTAATTGTATCCACTACCGATTCAATTGATATATTAACTATGCATATATGTGCAATGAATTGGTTAACTAAAGAAGTAGCTAACACACCAAATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAAATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCATTATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAGATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCGCTAGTAAAATACGGTCATTTCCTAAGCTGGATTATGTAATCGAATATATTCANGCATTCTATATACCTATACACGAATGGGAGCATTGGTTACTAACTATGGACTAATATTACGATCTCAGTACTGACTGCATATGTCTTCACATCTGATAACGTCATATCACACTATAACCATAATCAATTACATCACAATCAATATCATTGAAATGGTGTGACCTACTCAGTGAAAAAACTATATTAAGTCAAAACTNTATTGATGA]

[+] EMBL CD080195             [CTCGCGGCCAAAAATTCGGCACGAGGCGTGGACTAGCACTTGTATTCCGTGAACAATCTTTGATGGCAGCAAGACAAATCCGCGAACCATGTGCAAACGAACTGGCACCACATTTGCTAAATATCATAATCACAAAAATGACTGATGTGACAGCAAAAAATTGTAAGCAGTTACCAGCAACAAATAACGCACCGATTACTTCAAGTTTCAGTAAAATATGGCCAATAGGATCTAATACAAATCAGCAACAACAAACTATCGACAAAGAATCATCTATTCCAAATAATAACAACACAAACTCATCATCCCCAACATCAATACATAACAACTTAATTGTATCCACTACCGATTCAATTGATATATTAACTATGCATATATGTGCAATGAATTGGTTAACTAAAGAAGTAGCTAACACACCAAATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAAATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCATTATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAGATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCGCTAGTAAAATACGGTCATTTCCTAAGCTGGATTATGTAATCGAATATATTCANGCATTCTATATACCTATACACGAATGGGAGCATTGGTTACTAACTATGGACTAATATTACGATCTCAGTACTGACTGCATATGTCTTCACATCTGATAACGTCATATCACACTATAACCATAATCAATTACATCACAATCAATATCATTGAAATGGTGTGACCTACTCAGTGAAAAAACTATATTAAGTCAAAACTNTATTGATGA]
[+] EMBL CD083971             [                                                                                                                                                                                                                                                                     ACTAAGAGTCATCTATTCCAAATAATAACAACACAAATTCATCATCCCCAACATCAATACATAACAACTTAATTGTATCCACTACCGATTCATTTGATATATTAACTATGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_5951#0 CTCGCGGCCAAAAATTCGGCACGAGGCGTGGACTAGCACTTGTATTCCGTGAACAATCTT TGATGGCAGCAAGACAAATCCGCGAACCATGTGCAAACGAACTGGCACCACATTTGCTAA ATATCATAATCACAAAAATGACTGATGTGACAGCAAAAAATTGTAAGCAGTTACCAGCAA CAAATAACGCACCGATTACTTCAAGTTTCAGTAAAATATGGCCAATAGGATCTAATACAA ATCAGCAACAACAAACTATCGACAAAGAATCATCTATTCCAAATAATAACAACACAAACT CATCATCCCCAACATCAATACATAACAACTTAATTGTATCCACTACCGATTCAATTGATA TATTAACTATGCATATATGTGCAATGAATTGGTTAACTAAAGAAGTAGCTAACACACCAA ATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAA ATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCAT TATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAG ATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCG CTAGTAAAATACGGTCATTTCCTAAGCTGGATTATGTAATCGAATATATTCANGCATTCT ATATACCTATACACGAATGGGAGCATTGGTTACTAACTATGGACTAATATTACGATCTCA GTACTGACTGCATATGTCTTCACATCTGATAACGTCATATCACACTATAACCATAATCAA TTACATCACAATCAATATCATTGAAATGGTGTGACCTACTCAGTGAAAAAACTATATTAA GTCAAAACTNTATTGATGA



consensusID : consensus_5951#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 563
fasta sequence
                              [ATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAAATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCATTATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAGATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCGCTAGTAAAATACGGTCATTTCCTAGGCTGGATTATGTAATCGAATATATTCAGGCATTCTATATACCTATACACGAATGGGAGCATTGGTTAACTAACTATGGGACTAAATATTCACGATCTCAGTTAACTGGACTTGCATCATGTCTTTCACGATTTGATAAACGTCAATATCAACGACTTATAAACCCATTAAATCAAATTTACAATACAACAAATCAAATAAATTCATTTGGAAATGGTTTGTTGACCACTACATCCAGTTGAAAAAAAAACTCATTATATAATGTTTCATAGAACATTTTATTTTGTATGTATATAATA]

[-] EMBL CD076513             [ATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAAATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCATTATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAGATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCGCTAGTAAAATACGGTCATTTCCTAGGCTGGATTATGTAATCGAATATATTCAGGCATTCTATATACCTATACACGAATGGGAGCATTGGTTAACTAACTATGGGACTAAATATTCACGATCTCAGTTAACTGGACTTGCATCATGTCTTTCACGATTTGATAAACGTCAATATCAACGACTTATAAACCCATTAAATCAAATTTACAATACAACAAATCAAATAAATTCATTTGGAAATGGTTTGTTGACCACTACATCCAGTTGAAAAAAAAACTCATTATATAATGTTTCATAGAACATTTTATTTTGTATGTATATAATA]


>consensus_5951#1 ATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAA ATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCAT TATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAG ATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCG CTAGTAAAATACGGTCATTTCCTAGGCTGGATTATGTAATCGAATATATTCAGGCATTCT ATATACCTATACACGAATGGGAGCATTGGTTAACTAACTATGGGACTAAATATTCACGAT CTCAGTTAACTGGACTTGCATCATGTCTTTCACGATTTGATAAACGTCAATATCAACGAC TTATAAACCCATTAAATCAAATTTACAATACAACAAATCAAATAAATTCATTTGGAAATG GTTTGTTGACCACTACATCCAGTTGAAAAAAAAACTCATTATATAATGTTTCATAGAACA TTTTATTTTGTATGTATATAATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5951#0      CTCGCGGCCAAAAATTCGGCACGAGGCGTGGACTAGCACTTGTATTCCGTGAACAATCTT 60
consensus_5951#1      ------------------------------------------------------------
                                                                                  

consensus_5951#0      TGATGGCAGCAAGACAAATCCGCGAACCATGTGCAAACGAACTGGCACCACATTTGCTAA 120
consensus_5951#1      ------------------------------------------------------------
                                                                                  

consensus_5951#0      ATATCATAATCACAAAAATGACTGATGTGACAGCAAAAAATTGTAAGCAGTTACCAGCAA 180
consensus_5951#1      ------------------------------------------------------------
                                                                                  

consensus_5951#0      CAAATAACGCACCGATTACTTCAAGTTTCAGTAAAATATGGCCAATAGGATCTAATACAA 240
consensus_5951#1      ------------------------------------------------------------
                                                                                  

consensus_5951#0      ATCAGCAACAACAAACTATCGACAAAGAATCATCTATTCCAAATAATAACAACACAAACT 300
consensus_5951#1      ------------------------------------------------------------
                                                                                  

consensus_5951#0      CATCATCCCCAACATCAATACATAACAACTTAATTGTATCCACTACCGATTCAATTGATA 360
consensus_5951#1      ------------------------------------------------------------
                                                                                  

consensus_5951#0      TATTAACTATGCATATATGTGCAATGAATTGGTTAACTAAAGAAGTAGCTAACACACCAA 420
consensus_5951#1      ------------------------------------------------------------
                                                                                  

consensus_5951#0      ATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAA 480
consensus_5951#1      ATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAA 60
                      ************************************************************

consensus_5951#0      ATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCAT 540
consensus_5951#1      ATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCAT 120
                      ************************************************************

consensus_5951#0      TATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAG 600
consensus_5951#1      TATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAG 180
                      ************************************************************

consensus_5951#0      ATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCG 660
consensus_5951#1      ATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCG 240
                      ************************************************************

consensus_5951#0      CTAGTAAAATACGGTCATTTCCTAAGCTGGATTATGTAATCGAATATATTCANGCATTCT 720
consensus_5951#1      CTAGTAAAATACGGTCATTTCCTAGGCTGGATTATGTAATCGAATATATTCAGGCATTCT 300
                      ************************ *************************** *******

consensus_5951#0      ATATACCTATACACGAATGGGAGCATTGGTTA-CTAACTATGG-ACTAA-TATT-ACGAT 776
consensus_5951#1      ATATACCTATACACGAATGGGAGCATTGGTTAACTAACTATGGGACTAAATATTCACGAT 360
                      ******************************** ********** ***** **** *****

consensus_5951#0      CTCAGT--ACTGA--CTGCAT-ATGTCTT-CAC-ATCTGATAA-CGTCA-TATCACA--- 824
consensus_5951#1      CTCAGTTAACTGGACTTGCATCATGTCTTTCACGATTTGATAAACGTCAATATCAACGAC 420
                      ******  ****    ***** ******* *** ** ****** ***** *****     

consensus_5951#0      CTATAA--CCAT--AATCAA--TTACATCACAATCAATA--------TCATT--GAAATG 868
consensus_5951#1      TTATAAACCCATTAAATCAAATTTACAATACAACAAATCAAATAAATTCATTTGGAAATG 480
                       *****  ****  ******  *****  ****  ***         *****  ******

consensus_5951#0      GTGTG---ACC----TACTCAGT---GAAAAAACTATATTAAGTCAAAACTNTATTGATG 918
consensus_5951#1      GTTTGTTGACCACTACATCCAGTTGAAAAAAAAACTCATTATAT-AATGTTTCATAGAAC 539
                      ** **   ***     *  ****    ******    ****  * **   *  ** **  

consensus_5951#0      A----------------------- 919
consensus_5951#1      ATTTTATTTTGTATGTATATAATA 563
                      *                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)