These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5951#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 919 fasta sequence [CTCGCGGCCAAAAATTCGGCACGAGGCGTGGACTAGCACTTGTATTCCGTGAACAATCTTTGATGGCAGCAAGACAAATCCGCGAACCATGTGCAAACGAACTGGCACCACATTTGCTAAATATCATAATCACAAAAATGACTGATGTGACAGCAAAAAATTGTAAGCAGTTACCAGCAACAAATAACGCACCGATTACTTCAAGTTTCAGTAAAATATGGCCAATAGGATCTAATACAAATCAGCAACAACAAACTATCGACAAAGAATCATCTATTCCAAATAATAACAACACAAACTCATCATCCCCAACATCAATACATAACAACTTAATTGTATCCACTACCGATTCAATTGATATATTAACTATGCATATATGTGCAATGAATTGGTTAACTAAAGAAGTAGCTAACACACCAAATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAAATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCATTATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAGATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCGCTAGTAAAATACGGTCATTTCCTAAGCTGGATTATGTAATCGAATATATTCANGCATTCTATATACCTATACACGAATGGGAGCATTGGTTACTAACTATGGACTAATATTACGATCTCAGTACTGACTGCATATGTCTTCACATCTGATAACGTCATATCACACTATAACCATAATCAATTACATCACAATCAATATCATTGAAATGGTGTGACCTACTCAGTGAAAAAACTATATTAAGTCAAAACTNTATTGATGA] [+] EMBL CD080195 [CTCGCGGCCAAAAATTCGGCACGAGGCGTGGACTAGCACTTGTATTCCGTGAACAATCTTTGATGGCAGCAAGACAAATCCGCGAACCATGTGCAAACGAACTGGCACCACATTTGCTAAATATCATAATCACAAAAATGACTGATGTGACAGCAAAAAATTGTAAGCAGTTACCAGCAACAAATAACGCACCGATTACTTCAAGTTTCAGTAAAATATGGCCAATAGGATCTAATACAAATCAGCAACAACAAACTATCGACAAAGAATCATCTATTCCAAATAATAACAACACAAACTCATCATCCCCAACATCAATACATAACAACTTAATTGTATCCACTACCGATTCAATTGATATATTAACTATGCATATATGTGCAATGAATTGGTTAACTAAAGAAGTAGCTAACACACCAAATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAAATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCATTATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAGATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCGCTAGTAAAATACGGTCATTTCCTAAGCTGGATTATGTAATCGAATATATTCANGCATTCTATATACCTATACACGAATGGGAGCATTGGTTACTAACTATGGACTAATATTACGATCTCAGTACTGACTGCATATGTCTTCACATCTGATAACGTCATATCACACTATAACCATAATCAATTACATCACAATCAATATCATTGAAATGGTGTGACCTACTCAGTGAAAAAACTATATTAAGTCAAAACTNTATTGATGA] [+] EMBL CD083971 [ ACTAAGAGTCATCTATTCCAAATAATAACAACACAAATTCATCATCCCCAACATCAATACATAACAACTTAATTGTATCCACTACCGATTCATTTGATATATTAACTATGg ] consensusID : consensus_5951#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [ATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAAATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCATTATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAGATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCGCTAGTAAAATACGGTCATTTCCTAGGCTGGATTATGTAATCGAATATATTCAGGCATTCTATATACCTATACACGAATGGGAGCATTGGTTAACTAACTATGGGACTAAATATTCACGATCTCAGTTAACTGGACTTGCATCATGTCTTTCACGATTTGATAAACGTCAATATCAACGACTTATAAACCCATTAAATCAAATTTACAATACAACAAATCAAATAAATTCATTTGGAAATGGTTTGTTGACCACTACATCCAGTTGAAAAAAAAACTCATTATATAATGTTTCATAGAACATTTTATTTTGTATGTATATAATA] [-] EMBL CD076513 [ATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAAATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCATTATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAGATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCGCTAGTAAAATACGGTCATTTCCTAGGCTGGATTATGTAATCGAATATATTCAGGCATTCTATATACCTATACACGAATGGGAGCATTGGTTAACTAACTATGGGACTAAATATTCACGATCTCAGTTAACTGGACTTGCATCATGTCTTTCACGATTTGATAAACGTCAATATCAACGACTTATAAACCCATTAAATCAAATTTACAATACAACAAATCAAATAAATTCATTTGGAAATGGTTTGTTGACCACTACATCCAGTTGAAAAAAAAACTCATTATATAATGTTTCATAGAACATTTTATTTTGTATGTATATAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5951#0 CTCGCGGCCAAAAATTCGGCACGAGGCGTGGACTAGCACTTGTATTCCGTGAACAATCTT 60 consensus_5951#1 ------------------------------------------------------------ consensus_5951#0 TGATGGCAGCAAGACAAATCCGCGAACCATGTGCAAACGAACTGGCACCACATTTGCTAA 120 consensus_5951#1 ------------------------------------------------------------ consensus_5951#0 ATATCATAATCACAAAAATGACTGATGTGACAGCAAAAAATTGTAAGCAGTTACCAGCAA 180 consensus_5951#1 ------------------------------------------------------------ consensus_5951#0 CAAATAACGCACCGATTACTTCAAGTTTCAGTAAAATATGGCCAATAGGATCTAATACAA 240 consensus_5951#1 ------------------------------------------------------------ consensus_5951#0 ATCAGCAACAACAAACTATCGACAAAGAATCATCTATTCCAAATAATAACAACACAAACT 300 consensus_5951#1 ------------------------------------------------------------ consensus_5951#0 CATCATCCCCAACATCAATACATAACAACTTAATTGTATCCACTACCGATTCAATTGATA 360 consensus_5951#1 ------------------------------------------------------------ consensus_5951#0 TATTAACTATGCATATATGTGCAATGAATTGGTTAACTAAAGAAGTAGCTAACACACCAA 420 consensus_5951#1 ------------------------------------------------------------ consensus_5951#0 ATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAA 480 consensus_5951#1 ATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAA 60 ************************************************************ consensus_5951#0 ATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCAT 540 consensus_5951#1 ATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCAT 120 ************************************************************ consensus_5951#0 TATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAG 600 consensus_5951#1 TATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAG 180 ************************************************************ consensus_5951#0 ATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCG 660 consensus_5951#1 ATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCG 240 ************************************************************ consensus_5951#0 CTAGTAAAATACGGTCATTTCCTAAGCTGGATTATGTAATCGAATATATTCANGCATTCT 720 consensus_5951#1 CTAGTAAAATACGGTCATTTCCTAGGCTGGATTATGTAATCGAATATATTCAGGCATTCT 300 ************************ *************************** ******* consensus_5951#0 ATATACCTATACACGAATGGGAGCATTGGTTA-CTAACTATGG-ACTAA-TATT-ACGAT 776 consensus_5951#1 ATATACCTATACACGAATGGGAGCATTGGTTAACTAACTATGGGACTAAATATTCACGAT 360 ******************************** ********** ***** **** ***** consensus_5951#0 CTCAGT--ACTGA--CTGCAT-ATGTCTT-CAC-ATCTGATAA-CGTCA-TATCACA--- 824 consensus_5951#1 CTCAGTTAACTGGACTTGCATCATGTCTTTCACGATTTGATAAACGTCAATATCAACGAC 420 ****** **** ***** ******* *** ** ****** ***** ***** consensus_5951#0 CTATAA--CCAT--AATCAA--TTACATCACAATCAATA--------TCATT--GAAATG 868 consensus_5951#1 TTATAAACCCATTAAATCAAATTTACAATACAACAAATCAAATAAATTCATTTGGAAATG 480 ***** **** ****** ***** **** *** ***** ****** consensus_5951#0 GTGTG---ACC----TACTCAGT---GAAAAAACTATATTAAGTCAAAACTNTATTGATG 918 consensus_5951#1 GTTTGTTGACCACTACATCCAGTTGAAAAAAAAACTCATTATAT-AATGTTTCATAGAAC 539 ** ** *** * **** ****** **** * ** * ** ** consensus_5951#0 A----------------------- 919 consensus_5951#1 ATTTTATTTTGTATGTATATAATA 563 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||