These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5959#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1111 fasta sequence [CCTGCTACAGATACTACAAAACAAAATCTACTCCCATCTTTCGATCGAGCAACATAATGGTATCGTTTTAGTCCATTGTTTAGCCGGTGTTTCACGATCAGTTGCAGTTGTCATTGCCTATCTTCTATACAATAATCGTGGATTAAATGTTTACAAAGCATTAGAATTTGTACAAGCTTACATTTTATGGGACAACTTCAAGCTTATTATCATGATTTACATAGTCGTAAATCAAATATTTTCTCTGATAAATTAAATATGAAATCTAAAGATAAATTAACAAAACGTAATAGTGCAGAAAATTTAACCTCGTAGTGTAAGTTTATCATCTAACTGGATTCAATCACAATCACGTTCCTCTTCTGTACTATGTAAAGTTTCTAGTTCAAGTAATACTACTACTCCAGGGTATGTTACTTCAAAATTATCTATTTATGATTTGGGGAATTCAACATGGTCTGTAAGTACAACATGTACAAATCATCAACGTTCACTTGTTCGTAAATGTTCACATGAATCANAAACAACTTCAATGATACCAATCAAAACTCANAAGTAATTATATATATATATATTCTTCTAAAATTCATCATGTAATATAGACCAATGATTTTTGCACATGGAATATAACTTTTCTTGTAATCCTTAAGTTGAAACAGATTTTCTTATTGAATTGTACTAAATAACATCTTTTCCTCGGTTGTCTACTATGTTCATCATGTTCACCATCACCAGTTTGTTTTGTCTTGTTTTCTTCTTCTTCTTCTTTTCACCAAACACTGTAAGCAATAATGTGATTATGTAATTATTAATTTTTTTTTATATATTCACAAATGGAATACAACAAATTTTCGTATCATTTTGTGGATACTATTTTTTTTGTATTAAATATTTTACGGAAAAAATTTTCGCTTTTACTGTATAAATACTACTTATTCAAATCTCTTTAATTTACTCTTTATTTAAAGTTAAATAATTTTTTTTTAAAAAAATATTTAACTTTACAAATTTTATTCATTTTGTAAAAGATTTTTTTTGTTATTTATTTTGAAAAAAAAAGTTTTTTTTAATTTTAATGTAACAATAATGACAAAATGAATAAAATTAATAA] [+] EMBL CD080980 [CCTGCTACAGATACTACAAAACAAAATCTACTCCCATCTTTCGATCGAGCAACATAATGGTATCGTTTTAGTCCATTGTTTAGCCGGTGTTTCACGATCAGTTGCAGTTGTCATTGCCTATCTTCTATACAATAATCGTGGATTAAATGTTTACAAAGCATTAGAATTTGTACAAGCTTACATTTTATGGGACAACTTCAAGCTTATTATCATGATTTACATAGTCGTAAATCAAATATTTTCTCTGATAAATTAAATATGAAATCTAAAGATAAATTAACAAAACGTAATAGTGCAGAAAATTTAACCTCGTAGTGTAAGTTTATCATCTAACTGGATTCAATCACAATCACGTTCCTCTTCTGTACTATGTAAAGTTTCTAGTTCAAGTAATACTACTACTCCAGGGTATGTTACTTCAAAATTATCTATTTATGATTTGGGGAATTCAACATGGTCTGTAAGTACAACATGTACAAATCATCAACGTTCACTTGTTCGTAAATGTTCACATGAATCANAAACAACTTCAATGATACCAATCAAAACTCANAAGTAATTATATATATATATATTCTTCTAAAATTCATCATGTAATATAGACCAATGATT ] [-] EMBL CD074806 [ TCACATGAATCAAAAACAACTTCAATGATACCAATCAAAACTCAAAAGTAATTATATATATATATATTCTTCTAAAATTCATCATGTAATATAGACAAATGATTTTTGCACATGGAATATAACTTTTCTTGTAATCCTTAAGTTGAAACAGATTTTCTTATTGAATTGTACTAAATAACATCTTTTCCTCGGTTGTCTACTATGTTCATCATGTTCACCATCACCAGTTTGTTTTGTCTTGTTTTCTTCTTCTTCTTCTTTTCACCAAACACTGTAAGCAATAATGTGATTATGTAATTATTAATTTTTTTTTATATATTCACAAATGGAATACAACAAATTTTCGTATCATTTTGTGGATACTATTTTTTTTGTATTAAATATTTTACGGAAAAAATTTTCGCTTTTACTGTATAAATACTACTTATTCAAATCTCTTTAATTTACTCTTTATTTAAAGTTAAATAATTTTTTTTTAAAAAAATATTTAACTTTACAAATTTTATTCATTTTGTAAAAGATTTTTTTTGTTATTTATTTTGAAAAAAAAAGTTTTTTTTAATTTTAATGTAACAATAATGACAAAATGAATAAAATTAATAA] consensusID : consensus_5959#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence [GATCGTGAAACACCGGCTAAACAATGGACTAAAACGATACCATTATGTTTTCTTGCTTTTTCTGTAAGAATTAGTTAAAAAATATAATGGGAGAAAATTGAAACTCAATAGCTTTCTTTTTAAATCTCAATAGTATTCCTAAAATACAAGAATGAAATTAGTCAGATTTCAGGATTTCACTTTAATGAATCTAATATTTAAATAATTATCTGAAGATTCAATTTGTACAGCTACTGCGTTCAAAAATTACTTGAATAACAAATTACCTTATATCAGAAGTGGGTTTTGTGGAGATTNTAGTAATTNTATATGGTTGAAATCATGACTCCAGTACTTCCAGGCTTGCCAT] [+] EMBL CD150674 [GATCGTGAAACACCGGCTAAACAATGGACTAAAACGATACCATTATGTTTTCTTGCTTTTTCTGTAAGAATTAGTTAAAAAATATAATGGGAGAAAATTGAAACTCAATAGCTTTCTTTTTAAATCTCAATAGTATTCCTAAAATACAAGAATGAAATTAGTCAGATTTCAGGATTTCACTTTAATGAATCTAATATTTAAATAATTATCTGAAGATTCAATTTGTACAGCTACTGCGTTCAAAAATTACTTGAATAACAAATTACCTTATATCAGAAGTGGGTTTTGTGGAGATTNTAGTAATTNTATATGGTTGAAATCATGACTCCAGTACTTCCAGGCTTGCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5959#0 CCTGCTACAGATACTACAAAACAAAATCTACTCCCATCTTTCGATCGAGCAACATAATGG 60 consensus_5959#1 ------------------------------------------------------------ consensus_5959#0 TATCGTTTTAGTCCATTGTTTAGCCGGTGTTTCACGATCAGTTGCAGTTGTCATTGCCTA 120 consensus_5959#1 ------------------------------------------------GATCGTGAAACA 12 ** * * consensus_5959#0 TCTTCTATACAATAATCGTGGATTAAATGTTTACAAAGCATTAGAATTTGTACAAGCTTA 180 consensus_5959#1 CCGGCTAAACAA------TGGACTAAAACGATAC----CATTATGTTTT-------CTTG 55 * *** **** **** **** *** ***** *** *** consensus_5959#0 CATTTTATGGGACAACTTCAAGCTTATTATCATGATTT-ACATAGTCGTAAATCAAATAT 239 consensus_5959#1 CTTTTTCTGTAAGAATT---AGTTAAAAAATATAATGGGAGAAAATTGAAACTCAATAGC 112 * **** ** * ** * ** * * * ** ** * * * * * ** **** consensus_5959#0 TTTCTCTGATAAATTAAATATGAAATCTAAAGATAAATTAACAAAACGTAATAGTGCAGA 299 consensus_5959#1 TTTCTTTTTAAATCTCAATA-GTATTCCTAAAATACAAGAATGAAATTAGTCAGATTTCA 171 ***** * ** * **** * * ** ** *** * ** *** ** * consensus_5959#0 AAATTTAACCTCGTAGTGTAAGTTTATCATCTAACTGGATTCAATCACAATCACGTTCCT 359 consensus_5959#1 GGATTTCACTTTA----ATGAATCTAATATTTAA------------ATAATTATCTGAAG 215 **** ** * * * * ** ** *** * *** * * consensus_5959#0 CTTCTGTACTATGTAAAGTTTCTA-GTTCAAGTAATACTACTACTCCAGGGTATGTTACT 418 consensus_5959#1 ATTC---AATTTGTACAGCTACTGCGTTCAAAAATTACTTGAATAACAAATTACCTTATA 272 *** * * **** ** * ** ****** * **** * ** ** *** consensus_5959#0 TCAAAATTA--TCTATTTATGATTTGGGGAATTCAACATGGTCTGTAAGTACAACATGTA 476 consensus_5959#1 TCAGAAGTGGGTTTTGTGGAGATTNTAGTAATTNTATATGGT-TGAAATCATGAC---TC 328 *** ** * * * * **** * **** * ***** ** ** * ** * consensus_5959#0 CAAATCATCAACGTTCACTTGTTCGTAAATGTTCACATGAATCANAAACAACTTCAATGA 536 consensus_5959#1 CAGTACTTCCAGGCTTGCCAT--------------------------------------- 349 ** * ** * * * * consensus_5959#0 TACCAATCAAAACTCANAAGTAATTATATATATATATATTCTTCTAAAATTCATCATGTA 596 consensus_5959#1 ------------------------------------------------------------ consensus_5959#0 ATATAGACCAATGATTTTTGCACATGGAATATAACTTTTCTTGTAATCCTTAAGTTGAAA 656 consensus_5959#1 ------------------------------------------------------------ consensus_5959#0 CAGATTTTCTTATTGAATTGTACTAAATAACATCTTTTCCTCGGTTGTCTACTATGTTCA 716 consensus_5959#1 ------------------------------------------------------------ consensus_5959#0 TCATGTTCACCATCACCAGTTTGTTTTGTCTTGTTTTCTTCTTCTTCTTCTTTTCACCAA 776 consensus_5959#1 ------------------------------------------------------------ consensus_5959#0 ACACTGTAAGCAATAATGTGATTATGTAATTATTAATTTTTTTTTATATATTCACAAATG 836 consensus_5959#1 ------------------------------------------------------------ consensus_5959#0 GAATACAACAAATTTTCGTATCATTTTGTGGATACTATTTTTTTTGTATTAAATATTTTA 896 consensus_5959#1 ------------------------------------------------------------ consensus_5959#0 CGGAAAAAATTTTCGCTTTTACTGTATAAATACTACTTATTCAAATCTCTTTAATTTACT 956 consensus_5959#1 ------------------------------------------------------------ consensus_5959#0 CTTTATTTAAAGTTAAATAATTTTTTTTTAAAAAAATATTTAACTTTACAAATTTTATTC 1016 consensus_5959#1 ------------------------------------------------------------ consensus_5959#0 ATTTTGTAAAAGATTTTTTTTGTTATTTATTTTGAAAAAAAAAGTTTTTTTTAATTTTAA 1076 consensus_5959#1 ------------------------------------------------------------ consensus_5959#0 TGTAACAATAATGACAAAATGAATAAAATTAATAA 1111 consensus_5959#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||