These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5962#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [CATACATATGTTTAATATTGATTTTGAATGATTTCTAGTAACAAGCATTAATTGTGCAGCCAAACTTTGAACTTTTGCTGGTAATAATGCTAAATTTCCAATAACACGAATACATATATCATCTGCTTTCAATTCATCTTTATTATCTAATAACTCTTGAAGTTTTTCTTCAGCTAATTTCATTAAAAATGAAACTTCTTCATGAGATCTATTGAAATTGTCTATACTAAAAGTAAATATTGATACTTCTTCAATGCCAATATCACGACACCATTGTAAAG] [+] EMBL CD170258 [CATACATATGTTTAATATTGATTTTGAATGATTTCTAGTAACAAGCATTAATTGTGCAGCCAAACTTTGAACTTTTGCTGGTAATAATGCTAAATTTCCAATAACACGAATACATATATCATCTGCTTTCAATTCATCTTTATTATCTAATAACTCTTGAAGTTTTTCTTCAGCTAATTTCATTAAAAATGAAACTTCTTCATGAGATCTATTGAAATTGTCTATACTAAAAGTAAATATTGATACTTCTTCAATGCCAATATCACGACACCATTGTAAAG] consensusID : consensus_5962#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 227 fasta sequence [AGGGCATTTGGGGGCGTGTCCAGTTCAAATAATGTCCGTAAGTTAATGTTTAATAAAACTGTGAAGACGCTAGCTTTTTNAC-TAACTTTGAATGATTTCTAGTAACAAGCATTAATTGTGCAGCCAAACTTTGAACTTTTGCTGGTAATAACGCTAAATTTCCAATAACACCGAATACATATATCATCTGCTTTCAATTCATCTTTATTATCTAATAACTCTTGAAG] [+] EMBL CD181182 [AGGGCATTTGGGGGCGTGTCCAGTTCAAATAATGTCCGTAAGTTAATGTTTAATAAAACTGTGAAGACGCTAGCTTTTTNAC TAACTTTGAATGATTTCTAGTAACAAGCATTAATTGTGCAGCCAAACTTTGAACTTTTGCTGGTAATAACGCTAAATTTCCAATAACACCGAATACATATATCATCTGCTTTCAATTCATCTTTATTATCTAATAACTCTTGAAG] [+] EMBL CD181165 [AGGGCATTTGGGGGCGTGTCCAGTTCAAATAATGTCCGTAAGTTAATGTTTAATAAAACTGTGAAGACGCTAGCTTTTT ACTTAACTTTGAATGATTTCTAGTAACAAGCATTAATTGTGCAGCCAAACTTTGAACTTTTGCTGGTAATAACGCTAAATTTCCAATAACA CGAATACATATATCATCTGCTTTCAATTCATCTTTATTATCTAATAACTCTTGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5962#0 ------------------------------------------------------------ consensus_5962#1 AGGGCATTTGGGGGCGTGTCCAGTTCAAATAATGTCCGTAAGTTAATGTTTAATAAAACT 60 consensus_5962#0 ---CATACA-TATGTTTAATATTGATTTTGAATGATTTCTAGTAACAAGCATTAATTGTG 56 consensus_5962#1 GTGAAGACGCTAGCTTTTTNACTAACTTTGAATGATTTCTAGTAACAAGCATTAATTGTG 120 * ** ** *** * * * ********************************** consensus_5962#0 CAGCCAAACTTTGAACTTTTGCTGGTAATAATGCTAAATTTCCAATAACAC-GAATACAT 115 consensus_5962#1 CAGCCAAACTTTGAACTTTTGCTGGTAATAACGCTAAATTTCCAATAACACCGAATACAT 180 ******************************* ******************* ******** consensus_5962#0 ATATCATCTGCTTTCAATTCATCTTTATTATCTAATAACTCTTGAAGTTTTTCTTCAGCT 175 consensus_5962#1 ATATCATCTGCTTTCAATTCATCTTTATTATCTAATAACTCTTGAAG------------- 227 *********************************************** consensus_5962#0 AATTTCATTAAAAATGAAACTTCTTCATGAGATCTATTGAAATTGTCTATACTAAAAGTA 235 consensus_5962#1 ------------------------------------------------------------ consensus_5962#0 AATATTGATACTTCTTCAATGCCAATATCACGACACCATTGTAAAG 281 consensus_5962#1 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||