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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5963#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 658 fasta sequence
[GGAATTAAATGAATGTGTAAATGAATCGGATGAGTAAATTGGATTACCAAGACTAGACATCGATGACTGTGGGAGAGTAGTTGAAGACGTTCGAGAGTATGGATGAATACTATCAAATGCTTGAGATGATAGTTCATGATTGTAGGACATATTATCGGAAGAAAGACTGTACAAATCTTCTCGAAGAACATCTGGATCCTGTTTTAAAGTCTCAGTAATGTAATGATGATTTCCAGTTGATAAGGGAACGTTGACTGAAGCCATTACATCAGGATCAATAATCAGACGACCAGCATCTTCCTCTTCAGATTCATCTTCAGAAAATGTAGGTATTTCGACTGTGTCGGACAGAATACCTGAAACTTTGAGATCCGGAAATACATGTGGGAATTGAGTTAGGAGTTCTGAATGTGTAGCACTAAATGTTTTATCAAAGTCTTGTGAATCGGTCGTTGATATATTTGATTCTGGAATAATTTCTGAAGTAAACGGACTTTCTGTGTCTTTTGATGAATTTTCAACAATTTGATGTATTTTGTTATCAGTATTTGGGACATCTAAATTTGGTAATGAAGAAATGTTAACTTCATTTTCAAAAGAATTTTGTGTATTGTTGCTCAAAACTTTAGCACACTTGAGCTTACTTTTTGATTTCGGT]
[-] EMBL AI975145 [GGAATTAAATGAATGTGTAAATGAATCGGATGAGTAAATTGGATTACCAAGACTAGACATCGATGACTGTGGGAGAGTAGTTGAAGACGTTCGAGAGTATGGATGAATACTATCAAATGCTTGAGATGATAGTTCATGATTGTAGGACATATTATCGGAAGAAAGACTGTACAAATCTTCTCGAAGAACATCTGGATCCTGTTTTAAAGTCTCAGTAATGTAATGATGATTTCCAGTTGATAAGGGAACGTTGACTGAAGCCATTACATCAGGATCAATAATCAGACGACCAGCATCTTCCTCTTCAGATTCATCTTCAGAAAATGTAGGTATTTCGACTGTGTCGGACAGAATACCTGAAACTTTGAGATCCGGAAATACATGTGGGAATTGAGTTAGGAGTTCTGAAT ]
[+] EMBL CD065373 [ AAATG AGGTACTTCGACTGTGT AGACAGAATACCTGAAACTTTGAGATCCGGAAATACATGTGGGAATTGAGTTAGGAGTTCTGAATGTGTAGCACTAAATGTTTTATCAAAGTCTTGTGAATCGGTCGTTGATATATTTGATTCTGGAATAATTTCTGAAGTAAACGGACTTTCTGTGTCTTTTGATGAATTTTCAACAATTTGATGTATTTTGTTATCAGTATTTGGGACATCTAAATTTGGTAATGAAGAAATGTTAACTTCATTTTCAAAAGAATTTTGTGTATTGTTGCTCAAAACTTTAGCACACTTGAGCTTACTTTTTGATTTCGGT]
consensusID : consensus_5963#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence
[TCGTACTGAAAAGTTGTTGANAGAGAGATATCCAATAAGAAGGAAATAATATTTAGAAATACTAGTTTAGCACATAAATCTATGTAGGATAAGATGATGAAAATTACAACCATATTTTTACAATGATTTGTACGAATCATTTCGAGTAACAGCTAGAAGTGAATCGGAGATTCCAATTTAATTTTTGGGTGGTATCACTTGACGAGATGTATAGTTATAATGTTGAGTATTCAGTAGTAACATAGGACACGTTATGCGTTGTAGTTGATGGAACCTTGACATGGTTAGGTTGAAAATAAGCACTTCTACTGGGTACTGATAGGTTTGATACAGTTGATGACGCTAAAAGAGGTGGAGTTGTTAAACTAGGCAGAACAGTCTGGATTAATGATTGATTATGTGTTGGATAAACTGAAACTGGTTGAGATATTAAACACTCCGTCGAATATGTTGAGGAATTAAATGAATGTGTAAATGAATCGGATGAGTAAACTGGATTACCAAAACTAGACATCGATGACTGTGGGAGAGTAGTTGAAGACGTTCGAGAGTATGGATGAATACTATCAAATGCTTGAGATGATAGTTCATGATTGTAGGACATATTATCGGAAGAAAGACTGTACAAATCCTCGTGCCGAATTNTTGGCTCGG]
[-] EMBL CD082893 [TCGTACTGAAAAGTTGTTGANAGAGAGATATCCAATAAGAAGGAAATAATATTTAGAAATACTAGTTTAGCACATAAATCTATGTAGGATAAGATGATGAAAATTACAACCATATTTTTACAATGATTTGTACGAATCATTTCGAGTAACAGCTAGAAGTGAATCGGAGATTCCAATTTAATTTTTGGGTGGTATCACTTGACGAGATGTATAGTTATAATGTTGAGTATTCAGTAGTAACATAGGACACGTTATGCGTTGTAGTTGATGGAACCTTGACATGGTTAGGTTGAAAATAAGCACTTCTACTGGGTACTGATAGGTTTGATACAGTTGATGACGCTAAAAGAGGTGGAGTTGTTAAACTAGGCAGAACAGTCTGGATTAATGATTGATTATGTGTTGGATAAACTGAAACTGGTTGAGATATTAAACACTCCGTCGAATATGTTGAGGAATTAAATGAATGTGTAAATGAATCGGATGAGTAAACTGGATTACCAAAACTAGACATCGATGACTGTGGGAGAGTAGTTGAAGACGTTCGAGAGTATGGATGAATACTATCAAATGCTTGAGATGATAGTTCATGATTGTAGGACATATTATCGGAAGAAAGACTGTACAAATCCTCGTGCCGAATTNTTGGCTCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5963#0 -GGAATTAAATGAATGTGTAAATGAATCGGATGAGTAAATTGGATTACCAAGACTAGACA 59
consensus_5963#1 TCGTACTGAAAAGTTGTTGANAGAGAGATATCCAATAAGAAGGAA-ATAATATTTAGAAA 59
* * * ** *** * * * * *** *** * * **** *
consensus_5963#0 TCGATGACTGTGGGAGAGTAGTTGAAGACGTTCGAGAGTATGGATGAATACTATCAAATG 119
consensus_5963#1 T--ACTAGTTTAGCACATAAATCTATGTAGGATAAGATGATGAA-AATTACAACCATATT 116
* * * * * * * * * * * * * *** *** * * *** * ** **
consensus_5963#0 CTTGAGATGATAGTTCATGATTGTAGGACATATTATCGGAAGAAAGACTGTACAAATCTT 179
consensus_5963#1 TTTACAATGATTTGTACGAATCATTTCGAGTAACAGCTAGAAGTGAATCGGAGATTCCAA 176
** ***** * ** * ** * * * * * * * *
consensus_5963#0 CTCGAAGAACATCTGGATCCTGTTTTAAAGTCTCAGTAATGTAATGATGATTTCCAGTTG 239
consensus_5963#1 TTTAATTTTTGGGTGGTATCACTTGACGAGATGTATAGTTATAATGTTGAGTATTCAGTA 236
* * *** * ** ** * * ***** *** * *
consensus_5963#0 ATAAGGGAACGTTGACTGAAGCCATTACATCAGGATCAATAATCAGACGACCAGCATCTT 299
consensus_5963#1 GTAACATAGGACACGTT--ATGCGTTGTAGTTGATGGAACCTTGACATGGTTAGGTTGAA 294
*** * * * * ** * * ** * * * * ** *
consensus_5963#0 CCTCTTCAGATTCATCTTCAGAAAATGTAGGTATTTCGACTGTGTCGGACAGAATACCTG 359
consensus_5963#1 AATAAGCACTTCTACTGGGTACTGATAGGTTTGATACAGTTGATGACGCTAAAAGAGGTG 354
* ** * * ** * * * ** * * ** * **
consensus_5963#0 AAACTTTGAGATCCGGAAATACATGTGGGAAT--TGAGTTAGGA-GTTCTGAATGTG-TA 415
consensus_5963#1 GAGTTGTTAAACTAGGCAGAACAGTCTGGATTAATGATTGATTATGTGTTGGATAAACTG 414
* * * * * ** * *** *** * *** * * * ** ** ** *
consensus_5963#0 GCACTAAATGTTTTATCAAAGTCTTG--TGAATCGGTCGTTGATATATTTGATTCTGGAA 473
consensus_5963#1 AAACTGGTTGAGATATTAAACACTCCGTCGAATATGTTGAGGAATTAAATGAATGTGTAA 474
*** ** *** *** ** **** ** * ** ** *** * ** **
consensus_5963#0 TAATTTCTGA--AGTAAACGGACTTTCTGTGTCTTTTGATGAATTTTCAACAATTTGATG 531
consensus_5963#1 ATGAATCGGATGAGTAAACTGGATTACCAAAACT-------AGACATCGATGACTGTGGG 527
** ** ******* * ** * ** * ** * * * *
consensus_5963#0 TATTTTGTTATCAGTATTTGGGACATCTAAATTTGGTAATGAAGAAATGTTAACTTCATT 591
consensus_5963#1 AGAGTAGTTGAAGACGTTCGAGA-GTATGGATG-AATACTATCAAATGCTTGAGATGATA 585
* *** ** * ** * * ** ** * ** ** * * **
consensus_5963#0 -TTCAAAAGAATTTTGTGTATTGTTGCTCAAAA--CTTTA-GCACACTTGAGCTTACTTT 647
consensus_5963#1 GTTCATGATTGTAGGACATATTATCGGAAGAAAGACTGTACAAATCCTCGTGCCGAATTN 645
**** * * **** * * *** ** ** * ** * ** * **
consensus_5963#0 TTGATTTCGGT 658
consensus_5963#1 TTGGCTCGG-- 654
*** * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||