These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5968#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 653 fasta sequence [ATTTCAATTGGATATTTTGTATAGGTTCATCAATCTGACAACAACGTAAATACATGATTAGAGCATCTAGAGCAGTATCAACATCTGAATGAACTTCAGTTTTGCCATACAGATTATCTGCAATTCGATTTATTAGCTTATCATCGTAGACTTGGAGGCATACAAAACAGTAACGGACCATAATAGGCTTTGGTAGTTTATTATTGTTACATTCCTTCAATTTAGCGGACGAAGGTAGTTTCTCAAATTGTATTGGTCCGCTTAAACAGTCAGACGAACAACAAATGAGTGATGTAATCTTTTTCTCACGGTTGATATCTACACATAAACTGCATTTACATTTGAAGTAATAGTTATTTGACAGATACGTTTGTCTTTCTTCAGTGGTTGTCATACAATCACAGTAACTAATATGGGGTGGTCCCGAGCATACAGATGAAGCATATCTACATAGAATAAGTTGACGATTTGAAAATACGTACTGCAACTCAGGGACACAAGAATGATCCAGACGAGCAGCTCTTAGAAAAAGTGCAGGCCCAACATCCACACCAGTTTGGATCAGTGATCATGAAGCCATTTATTTGAATTTTACAAAATATTTGGAAAATAGTTTCCTCATTTGCAAACACTTCCCCACCCAAAAAATCCCC] [+] EMBL CD135417 [ATTTCAATTGGATATTTTGTATAGGTTCATCAATCTGACAACAACGTAAATACATGATTAGAGCATCTAGAGCAGTATCAACATCTGAATGAACTTCAGTTTTGCCATACAGATTATCTGCAATTCGATTTATTAGCTTATCATCGTAGACTTGGAGGCATACAAAACAGTAACGGACCATAATAGGCTTTGGTAGTTTATTATTGTTACATTCCTTCAATTTAGCGGACGAAGGTAGTTTCTCAAATTGTATTGGTCCGCTTAAACAGTCAGACGAACAACAAATGAGTGATGTAATCTTTTTCTCACGGTTGATATCTACACATAAACTGCATTTACATTT ] [-] EMBL CD083741 [ TCATCGTAGACTTGGAGGCATACAAAACAGTAACGGACCATAATAGGCTTTGGTAGTTTATTATTGTTACATTCCTTCAATTTAGCGGACGAAGGTAGTTTCTCAAATTGTATTGGTCCGCTTAAACAGTCAGACGAACAACAAATGAGTGATGTAATCTTTTTCTCACGGTTGATATCTACACATAAACTGCATTTACATTTGAAGTAATAGTTATTTGACAGATACGTTTGTCTTTCTTCAGTGGTTGTCATACAATCACAGTAACTAATATGGGGTGGTCCCGAGCATACAGATGAAGCATATCTACATAGAATAAGTTGACGATTTGAAAATACGTACTGCAACTCAGGGACACAAGAATGATCCAGACGAGCAGCTCTTAGAAAAAGTGCAGGCCCAACATCCACACCAGTTTGGATCAGTGATCATGAAGCCATTTATTTGAATTTTACAAAATATTTGGAAAATAGTTTCCTCATTTGCAAACACTTCCCCACCCAAAAAATCCCC] consensusID : consensus_5968#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [GCCCAGAAACTAACCTTAGAAAAAGTGCAGGCCCAACATCCACACNCATTTGGATCAGTGATCATGAAGCCATTTATTTGAATTTTACAAAATATTTGGAAAATAGTTTCCTCATTTGCAAACACTTCCCCACCCAAAAAATCCCATAGGGTTAGCCTTATTGTATGATACTTCTCCATAAGATCGAAATTCTTTCGTATTTCGTTTTCGTGTGAGAAGAGAGAATCGATATGGCATTTCTGGTCCTTCAGACATAATTATAAGCACGTTTCAGACAAACCTGCATACTGATAATCCTTAAAATAAGACGGACAGGGGCTATTGGTAGGCGTTCACATTTAATATACTGTTTACATTCTCGTTTGTGCACGCGCCACATAAGAAGCTGACAGTCGCGGGAACAATAACGCATTAACTTGCAAGAAGAGCACAACCGAAGATTAGGGATGCTTTTCAAACACCCATCACAGTACTTCGAGAGTTTGTTGTTCAAAATGGAGTGTACGTAAGAAGTCTCCTCTGAGCAGACAACCCCCGTCAAACTCATTTCTAAATCAGAAGCATCCTGTTGTTGACCTTGTTGA] [-] EMBL CD161360 [GCCCAGAAACTAACCTTAGAAAAAGTGCAGGCCCAACATCCACACNCATTTGGATCAGTGATCATGAAGCCATTTATTTGAATTTTACAAAATATTTGGAAAATAGTTTCCTCATTTGCAAACACTTCCCCACCCAAAAAATCCCATAGGGTTAGCCTTATTGTATGATACTTCTCCATAAGATCGAAATTCTTTCGTATTTCGTTTTCGTGTGAGAAGAGAGAATCGATATGGCATTTCTGGTCCTTCAGACATAATTATAAGCACGTTTCAGACAAACCTGCATACTGATAATCCTTAAAATAAGACGGACAGGGGCTATTGGTAGGCGTTCACATTTAATATACTGTTTACATTCTCGTTTGTGCACGCGCCACATAAGAAGCTGACAGTCGCGGGAACAATAACGCATTAACTTGCAAGAAGAGCACAACCGAAGATTAGGGATGCTTTTCAAACACCCATCACAGTACTTCGAGAGTTTGTTGTTCAAAATGGAGTGTACGTAAGAAGTCTCCTCTGAGCAGACAACCCCCGTCAAACTCATTTCTAAATCAGAAGCATCCTGTTGTTGACCTTGTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5968#0 ------ATTTCAATTGGATATTTTGTATAGGTTCATCAATCTGACAACAACGTAAATACA 54 consensus_5968#1 GCCCAGAAACTAACCTTAGAAAAAGTGCAGGCCCAACATCC--ACACNCATTTGGATCAG 58 * ** * * ** *** ** ** * *** * * ** consensus_5968#0 TGATTAGAG---CATCTAGAGCAGTATCAACATCTGAATGAACTTCAGTTTTGCCATACA 111 consensus_5968#1 TGATCATGAAGCCATTTATTTGAATTTTACAAAATATTTGGAAAATAGTTTCCTCAT--- 115 **** * *** ** * * * * * * ** * ***** *** consensus_5968#0 GATTATCTGCAATTCGATTTATTAGCTTATCATCGTAGACTTGGAGGCATACAAAACAGT 171 consensus_5968#1 --TTGCAAACACTTC--CCCACCCAAAAAATCCCATAGGGTT--AGCCTTATTGTATGAT 169 ** ** *** * * * *** ** ** * ** * * consensus_5968#0 AACGGACCATAATAGGCTTTGGTAGTTTATTATTGTTACATTCCTTCAATTTAGCGGACG 231 consensus_5968#1 ACTTCTCCATAA--GATCGAAATTCTTTCGTATTTCGTTTTCGTGTGAGAAGAGAGAATC 227 * ****** * * *** **** * * * ** * * consensus_5968#0 AAGGTAGTTTCTCAAATTGTATTGGTCCGCTTAAACAGTCAGACGAACAACAAATGAGTG 291 consensus_5968#1 GATATGGCATTTCTGGTCCTTCAGACATAATTATAAGCACGTTTCAGACAAACCTGCATA 287 * * * * ** * * * *** * * * * * ** * consensus_5968#0 ATG-TAATCTTTTTCTCACGGTTGATATCTACACATAAACTGCATTTACATTTGAAGTAA 350 consensus_5968#1 CTGATAATCCTTAAAATAAGACGGACAGGGGCTATTGGTAGGCGTTCACATTTAATATAC 347 ** ***** ** * * ** * * * ** ** ****** * ** consensus_5968#0 TAGTTAT-TTGACAGATACGTTTGTCTTTCTTCAGTGGTTGTCATACAATCACAGTAACT 409 consensus_5968#1 TGTTTACATTCTCGTTTGTGCACGCGCCACATAAGAAGCTG----ACAGTCGCGGGAACA 403 * *** ** * * * * * * ** * ** *** ** * * *** consensus_5968#0 AATATGGGGTGGTCCCGAGCATACAGATGAAGCATATCTACATAGAATAAGTTGACGATT 469 consensus_5968#1 ATAACGCATT-------AACTTGCAAGAAGAGCACAAC--CGAAGATTAGG--GATGCTT 452 * * * * * * * ** **** * * * *** ** * ** * ** consensus_5968#0 TGAAAATACGTACTGCAACTCAGGGACACAAGAATGATCCAGACGAGCAGCTCTTAGAAA 529 consensus_5968#1 TTCAAACACCCATCACAGTACTTCGAGAGTTTGTTGTTCAAAATGGAGTGTACGTAAGAA 512 * *** ** * ** * ** * ** ** * * * * * ** ** consensus_5968#0 AAGTGC---AGGCCCAACATCCACACCAGTTTGGATCAGTGATCATGAAGCCATTTATT- 585 consensus_5968#1 GTCTCCTCTGAGCAGACAACCCCCGTCAAACTCATTTCTAAATCA-GAAGCATCCTGTTG 571 * * ** * * ** * ** * * **** ***** * ** consensus_5968#0 TGAATTTTACAAAATATTTGGAAAATAGTTTCCTCATTTGCAAACACTTCCCCACCCAAA 645 consensus_5968#1 TTGACCTTGTTGA----------------------------------------------- 584 * * ** * consensus_5968#0 AAATCCCC 653 consensus_5968#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||