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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5970#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[ATTAGTTGAAATTAATTTATCATCAGCTTGTATAAAATATTTTGCAGCTGTAAATAATGTTGATGCTTCAGAAGTTACATTTTTAGCAGCAAATTCACATCTGAAGAAAAAAAAAGCAAAATTCACGGTCGAATACAAACTAATAGGGATTCTTCGGAATCCATTACTAACATCATAGAATAATCTTAGCAAACTATCATTGAGAACCACGAAGCACTGAATAGATATTTCTTTTTCGTATCGTACTCTTCAGTAGTGTGCATCCACGATCCCGCCACTAGAGATCGAGTATAGGAAGACGGTTGGGTGATCTTATGAATTACTTGAAGTTAAACATCTGTAACGTTGGACGCCATCTTGAAGGTCTAGTGGCTTAGTATTTGTATGAGAAACCGAAGTTCCTGGGTTCGATTTCTGTGGTTGGGGTCTTGAATGCCCATTGACGAGAAGTCCTGTAAGCAGCTGTTCAGCATTTCCTAGT]
[+] EMBL CD137190 [ATTAGTTGAAATTAATTTATCATCAGCTTGTATAAAATATTTTGCAGCTGTAAATAATGTTGATGCTTCAGAAGTTACATTTTTAGCAGCAAATTCACATCTGAAGAAAAAAAAAGCAAAATTCACGGTCGAATACAAACTAATAGGGATTCTTCGGAATCCATTACTAACATCATAGAATAATCTTAGCAAACTATCATTGAGAACCACGAAGCACTGAATAGATATTTCTTTTTCGTATCGTACTCTTCAGTAGTGTGCATCCACGATCCCGCCACTAGAGATCGAGTATAGGAAGACGGTTGGGTGATCTTATGAATTACTTGAAGTTAAACATCTGTAACGTTGGACGCCATCTTGAAGGTCTAGTGGCTTAGTATTTGTATGAGAAACCGAAGTTCCTGGGTTCGATTTCTGTGGTTGGGGTCTTGAATGCCCATTGACGAGAAGTCCTGTAAGCAGCTGTTCAGCATTTCCTAGT]
consensusID : consensus_5970#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence
[AATTATCCCCAAATCTACAAGGCTCTTAGTACTGATGTTAAGAAAAAATCAAACGAGATAAATATGTGTGACCAACAGGCTAATGACTTTGCTTGTGTAGCGAAAAGTTTGGCTGTCCAAGAGTGTCATGAATTAGCGGCAGTTTTTTACTGGGCAAAGCAAGATGTGAATTTGCTGCTAAAAATGTAACTTCTGAAGCGTCAACATTATTTACAGCTGCAAAATATTTTATACAAGCTGATGATAAATTAATTTCAACTAATTCTATTAATTATGAGGATAATTTAAATTGCGCGATTCTTTGTTTGTTAAGAACAGCAAGAATCTATGAATTGAATGAACTTTTCACATTAGCAACAAATGTCTACATTTATCTGGTGGATACGTTAATGAGGCGATCT]
[+] EMBL CD094211 [AATTATCCCCAAATCTACAAGGCTCTTAGTACTGATGTTAAGAAAAAATCAAACGAGATAAATATGTGTGACCAACAGGCTAATGACTTTGCTTGTGTAGCGAAAAGTTTGGCTGTCCAAGAGTGTCATGAATTAGCGGCAGTTTTTTACTGGGCAAAGCAAGATGTGAATTTGCTGCTAAAAATGTAACTTCTGAAGCGTCAACATTATTTACAGCTGCAAAATATTTTATACAAGCTGATGATAAATTAATTTCAACTAATTCTATTAATTATGAGGATAATTTAAATTGCGCGATTCTTTGTTTGTTAAGAACAGCAAGAATCTATGAATTGAATGAACTTTTCACATTAGCAACAAATGTCTACATTTATCTGGTGGATACGTTAATGAGGCGATCT]
consensusID : consensus_5970#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence
[TATATATGTGCATACAATAGATCTATGAATTGAATGAACTTTTCACATTAGCAACAAATGTCTACATTTATCTGGTGGATACGTTAATGGTAATTCATTTTTTTCTGTTTTTTTTCTTTTCAACTAACTCGTTGAGAAAGGAACACTTGAAATAAATCAAGTAACCTATTGTAACTGTAGTGGCTGGCTCTATTTCAAACCCACATAGGCTATTCTAGTTTTTGAACTGAACACTCTACTCGTTCTTCTCAAGCCACATTTTTACCCTGCCACTTATTCGCTTATTAATCNCGACTTTTTTTTATATGATCGTATGTGCGCTAATTACTTTTACCTACTCATAT]
[+] EMBL CD194055 [TATATATGTGCATACAATAGATCTATGAATTGAATGAACTTTTCACATTAGCAACAAATGTCTACATTTATCTGGTGGATACGTTAATGGTAATTCATTTTTTTCTGTTTTTTTTCTTTTCAACTAACTCGTTGAGAAAGGAACACTTGAAATAAATCAAGTAACCTATTGTAACTGTAGTGGCTGGCTCTATTTCAAACCCACATAGGCTATTCTAGTTTTTGAACTGAACACTCTACTCGTTCTTCTCAAGCCACATTTTTACCCTGCCACTTATTCGCTTATTAATCNCGACTTTTTTTTATATGATCGTATGTGCGCTAATTACTTTTACCTACTCATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5970#1 ----------------------------------------------------AATTATCC 8
consensus_5970#2 -------------------------------------------------------TATAT 5
consensus_5970#0 ATTAGTTGAAATTAATTTATCATCAGCTTGTATAAAATATTTTGCAGCTGTAAATAATGT 60
**
consensus_5970#1 CCAAATCTACAA-G----GCTCTTAGTACTGATGTTAAGAAAAAATCAAACGAGATAAAT 63
consensus_5970#2 ATGTGCATACAATA----GATCTATGAATTGA----ATGAACTTTTCACATTAGCAACAA 57
consensus_5970#0 TGATGCTTCAGAAGTTACATTTTTAGCAGCAAATTCACATCTGAAGAAAAAAAAAGCAAA 120
* * * * * * * * * * * *
consensus_5970#1 ATGTGTGACCAACAGGCTAATGACTTTGCTTGTGTAGCGAAAAGTTTGGCTGTCCAAGAG 123
consensus_5970#2 ATGTCTA--CATTTATCTGGTGGATACGTTAATGGTAATTCATTTTTTTCTGTTTTTTT- 114
consensus_5970#0 ATTCACGGTCGAATACAAACTAATAGGGATTCTTCGGAATCCATTACTAACATCATAGAA 180
** * * * * * * *
consensus_5970#1 TGTCATGAATTAGCGGCAGTTTTTTACTGGGCAAAGCAAGATGTGAATTTGCTGCTAAAA 183
consensus_5970#2 TCTTTTCAACTAAC-----TCGTTGAGAAAGGAACACTTGAAATAAATCAAGTAACCTAT 169
consensus_5970#0 TAATCTTAGCAAACTATCATTGAGAACCACGAAGCACTGAATAGATATTTCTTTTTCGTA 240
* * * * * * * * * * * ** *
consensus_5970#1 ATGTAA-CTTCTGAAGCGTCAACATTATTTACAGCTGCAAAATATTTTATACAAGCTGAT 242
consensus_5970#2 -TGTAA-CTGTAGTGGC--TGGCTCTATTTCAAAC--CCACATAGGCTATTCTAGTTTTT 223
consensus_5970#0 TCGTACTCTTCAGTAGTGTGCATCCACGATCCCGCCACTAGAGATCGAGTATAGGAAGAC 300
*** ** * * * * * * * * * *
consensus_5970#1 GATAAATTAAT-TTCAACTAATTCTATTAATTATGAGGATAATTTAAATTGCGCGATTCT 301
consensus_5970#2 GA--ACTGAACACTCTACTCGTTCTTCTCA----AGCCACATTTTTACCCTGCCACTTAT 277
consensus_5970#0 GG---TTGGGTGATCTTATGAATTACTTGAAGTTAAACATCTGTAACGTTGGACGCCATC 357
* * ** * * * * * * *
consensus_5970#1 TTGTTTGT-TAAGAACAGCAAGAATCTATGAATTGAATGAACTTTTCACATTAGCAACAA 360
consensus_5970#2 TCGCTTAT-TAATCNCGACTTTTTTTTATA---TGATCGTATGT---GCGCTAATTACTT 330
consensus_5970#0 TTGAAGGTCTAGTGGCTTAGTATTTGTATGAG-AAACCGAAGTTCCTGGGTTCGATTTCT 416
* * * ** * * *** * * * * *
consensus_5970#1 ATGTCTACATTTATCTGGTGGATACGTTAATGAGGCGATCT------------------- 401
consensus_5970#2 TTACCTACTCATAT---------------------------------------------- 344
consensus_5970#0 GTGGTTGGG---GTCTTGAATGCCCATTGACGAGAAGTCCTGTAAGCAGCTGTTCAGCAT 473
* * *
consensus_5970#1 --------
consensus_5970#2 --------
consensus_5970#0 TTCCTAGT 481
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||