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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 877 fasta sequence
[ATGTGCATACTATATTTCACTAATGTTTAAGCTTTTTACAGATCTAAACTTTTATAAAACTCCTAGTTCATTGTCAGTAAACGTCTTAGGGTCAGGAAGTTTTTCATGGCCAATCAATTCTTCAGGATGATTAATGCAAAAATAAGTAATCCAAGCCCAAAATAAAGTCATTAGTAATTGGCTTTTTCTTTCTTCTTTAAAATCTCGCTCAATGTAATCCCTGTACATAAACCTGAAAAAGGCAAATTCGTGGTAAGGGCAAGTCTGCAATACATAAATAAAGCATGAATTACAACTTTAAATATCAGTCTGAAAATCCACTAAGATGTCAAACAATAATAAAGGGGCTCATTTAGTTTAAGTATTTAAATAGTTACGG-TTGTGAAGGTAAACACACACAGGTGGTTGAGGGATATGATCAGAGTTATCAGTTACTGATGACCTCAAAATCCAGTGTAGGAGAACACAGAGAGCTATTGCTAGGAGATGGCTGTTAAGCTCACTAAGTCTTCAGTAATCTATCGAATTTTTTCAATATTGGTTACTTACAATTGGTGGTACGACCTTCCTGGATAAAACTTTACTGTTCTGAACAAACAGACAACTGCACTCTGAAATCTCGTACTCATTCATTTCTTATTAAAATATTACATATACAAATAAACACACAAAATAAAAACAACCTTGGTTTCATGCTATAAAAAGGAACTCTTTCAGAAGAACTGTCGCTAAATTCTCGTAGGATTATAAAGCGTGATTTGAGAAATGGTCTCAGTTTCCCAAGGAACATCGCACTCTTTATTATATGATCTCTTAGTTGTCTAATTATATCCTGAAAACTTGTAGAACACGTTGTTTTTGTCCCGTCAAATAAGAT]
[+] EMBL CD076500 [ATGTGCATACTATATTTCACTAATGTTTAAGCTTTTTACAGATCTAAACTTTTATAAAACTCCTAGTTCATTGTCAGTAAACGTCTTAGGGTCAGGAAGTTTTTCATGGCCAATCAATTCTTCAGGATGATTAATGCAAAAATAAGTAATCCAAGCCCAAAATAAAGTCATTAGTAATTGGCTTTTTCTTTCTTCTTTAAAATCTCGCTCAATGTAATCCCTGTACATAAACCTGAAAAAGGCAAATTCGTGGTAAGGGCAAGTCTGCAATACATAAATAAAGCATGAATTACAACTTTAAATATCAGTCTGAAAATCCACTAAGATGTCAAACAATAATAAAGGGGCTCATTTAGTTTAAGTATTTAAATAGTTACGG TTGTGAAGGTAAACACACACAGGTGGTTGAGGGATATGATCAGAGTTATCAGTTACTGATGACCTCAAAATCCAGTGTAGGAGAACACAGAGAGCTATTGCTAGGAGATGGCTGTTAAGCTCACTAAGTCTTCA ]
[-] EMBL CD082917 [ TTANATAG TACGGTTTGTGAAGGTAGACACACACAGGTGGTTGAGGGATATGATCAGAGTTATCAGTTACTGATGACCTCAAAATCCAGTGTAGGAGAACACAGAGAGCTATTGCTAGGAGATGGCTGTTAAGCTCACTAAGTCTTCAGTAATCTATCGAATTTTTTCAATATTGGTTACTTACAATTGGTGGTACGACCTTCCTGGATAAAACTTTACTGTTCTGAACAAACAGACAACTGCACTCTGAAATCTCGTACTCATTCATTTCTTATTAAAATATTACATATACAAATAAACACACAAAATAAAAACAACCTTGGTTTCATGCTATAAAAAGGAACTCTTTCAGAAGAACTGTCGCTAAATTCTCGTAGGATTATAAAGCGTGATTTGAGAAATGGTCTCAGTTTCCCAAGGAACATCGCACTCTTTATTATATGATCTCTTAGTTGTCTAATTATATCCTGAAAACTTGTAGAACACGTTGTTTTTGTCCCGTCAAATAAGAT]
consensusID : consensus_5971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence
[ATTCTTCAGGATGATTAATGCAGAAATAAGTAATCCAAGCCCAGAATAAAGTCATTAGTAATTGGCTTTTTCTTTCTTCTTTAAAATCTCGCTCAATGTAATCCCTGTACATAAACCTTGGTTTCATGCTATAAAAAGGAACTCTTTCAGAAGAACTGTCGCTAAATTCTCGTAGGATTATAAAGCGTGATTTGAGAAATGGTCTCAGTTTCCCAAGGAACATCGCACTCTTTATTATATGATCTCTTAGTTGTCTA]
[-] EMBL CD139932 [ATTCTTCAGGATGATTAATGCAGAAATAAGTAATCCAAGCCCAGAATAAAGTCATTAGTAATTGGCTTTTTCTTTCTTCTTTAAAATCTCGCTCAATGTAATCCCTGTACATAAACCTTGGTTTCATGCTATAAAAAGGAACTCTTTCAGAAGAACTGTCGCTAAATTCTCGTAGGATTATAAAGCGTGATTTGAGAAATGGTCTCAGTTTCCCAAGGAACATCGCACTCTTTATTATATGATCTCTTAGTTGTCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5971#0 ATGTGCATACTATATTTCACTAATGTTTAAGCTTTTTACAGATCTAAACTTTTATAAAAC 60
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 TCCTAGTTCATTGTCAGTAAACGTCTTAGGGTCAGGAAGTTTTTCATGGCCAATCAATTC 120
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 TTCAGGATGATTAATGCAAAAATAAGTAATCCAAGCCCAAAATAAAGTCATTAGTAATTG 180
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 GCTTTTTCTTTCTTCTTTAAAATCTCGCTCAATGTAATCCCTGTACATAAACCTGAAAAA 240
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 GGCAAATTCGTGGTAAGGGCAAGTCTGCAATACATAAATAAAGCATGAATTACAACTTTA 300
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 AATATCAGTCTGAAAATCCACTAAGATGTCAAACAATAATAAAGGGGCTCATTTAGTTTA 360
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 AGTATTTAAATAGTTACGGTTGTGAAGGTAAACACACACAGGTGGTTGAGGGATATGATC 420
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 AGAGTTATCAGTTACTGATGACCTCAAAATCCAGTGTAGGAGAACACAGAGAGCTATTGC 480
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 TAGGAGATGGCTGTTAAGCTCACTAAGTCTTCAGTAATCTATCGAATTTTTTCAATATTG 540
consensus_5971#1 ------------------------------------------------------------
consensus_5971#0 GTTACTTACAATTGGTGGTACGACCTTCCTGGATAAAACTTTACTGTTCTGAACAAACAG 600
consensus_5971#1 ---------ATTCTTCAGGATGA--TTAATGCAGAAA---TAAGTAATCCAAGCC--CAG 44
* * * * ** ** ** * *** * * * ** * * ***
consensus_5971#0 ACAACTGCACTCTGAAATCTCGTACTCATTCATTTCTTATTAAAATATTACATATACAAA 660
consensus_5971#1 AATAAAGTCATTAGTAATT---GGCTTTTTCTTTCTTCTTTAAAATCTCGCTCA---ATG 98
* * * * * *** ** *** ** * ******* * * * *
consensus_5971#0 TAAACACACAAAATAAAAACAACCTTGGTTTCATGCTATAAAAAGGAACTCTTTCAGAAG 720
consensus_5971#1 TAATCCCTGTACATAAA-----CCTTGGTTTCATGCTATAAAAAGGAACTCTTTCAGAAG 153
*** * * * ***** **************************************
consensus_5971#0 AACTGTCGCTAAATTCTCGTAGGATTATAAAGCGTGATTTGAGAAATGGTCTCAGTTTCC 780
consensus_5971#1 AACTGTCGCTAAATTCTCGTAGGATTATAAAGCGTGATTTGAGAAATGGTCTCAGTTTCC 213
************************************************************
consensus_5971#0 CAAGGAACATCGCACTCTTTATTATATGATCTCTTAGTTGTCTAATTATATCCTGAAAAC 840
consensus_5971#1 CAAGGAACATCGCACTCTTTATTATATGATCTCTTAGTTGTCTA---------------- 257
********************************************
consensus_5971#0 TTGTAGAACACGTTGTTTTTGTCCCGTCAAATAAGAT 877
consensus_5971#1 -------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||