These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 877 fasta sequence [ATGTGCATACTATATTTCACTAATGTTTAAGCTTTTTACAGATCTAAACTTTTATAAAACTCCTAGTTCATTGTCAGTAAACGTCTTAGGGTCAGGAAGTTTTTCATGGCCAATCAATTCTTCAGGATGATTAATGCAAAAATAAGTAATCCAAGCCCAAAATAAAGTCATTAGTAATTGGCTTTTTCTTTCTTCTTTAAAATCTCGCTCAATGTAATCCCTGTACATAAACCTGAAAAAGGCAAATTCGTGGTAAGGGCAAGTCTGCAATACATAAATAAAGCATGAATTACAACTTTAAATATCAGTCTGAAAATCCACTAAGATGTCAAACAATAATAAAGGGGCTCATTTAGTTTAAGTATTTAAATAGTTACGG-TTGTGAAGGTAAACACACACAGGTGGTTGAGGGATATGATCAGAGTTATCAGTTACTGATGACCTCAAAATCCAGTGTAGGAGAACACAGAGAGCTATTGCTAGGAGATGGCTGTTAAGCTCACTAAGTCTTCAGTAATCTATCGAATTTTTTCAATATTGGTTACTTACAATTGGTGGTACGACCTTCCTGGATAAAACTTTACTGTTCTGAACAAACAGACAACTGCACTCTGAAATCTCGTACTCATTCATTTCTTATTAAAATATTACATATACAAATAAACACACAAAATAAAAACAACCTTGGTTTCATGCTATAAAAAGGAACTCTTTCAGAAGAACTGTCGCTAAATTCTCGTAGGATTATAAAGCGTGATTTGAGAAATGGTCTCAGTTTCCCAAGGAACATCGCACTCTTTATTATATGATCTCTTAGTTGTCTAATTATATCCTGAAAACTTGTAGAACACGTTGTTTTTGTCCCGTCAAATAAGAT] [+] EMBL CD076500 [ATGTGCATACTATATTTCACTAATGTTTAAGCTTTTTACAGATCTAAACTTTTATAAAACTCCTAGTTCATTGTCAGTAAACGTCTTAGGGTCAGGAAGTTTTTCATGGCCAATCAATTCTTCAGGATGATTAATGCAAAAATAAGTAATCCAAGCCCAAAATAAAGTCATTAGTAATTGGCTTTTTCTTTCTTCTTTAAAATCTCGCTCAATGTAATCCCTGTACATAAACCTGAAAAAGGCAAATTCGTGGTAAGGGCAAGTCTGCAATACATAAATAAAGCATGAATTACAACTTTAAATATCAGTCTGAAAATCCACTAAGATGTCAAACAATAATAAAGGGGCTCATTTAGTTTAAGTATTTAAATAGTTACGG TTGTGAAGGTAAACACACACAGGTGGTTGAGGGATATGATCAGAGTTATCAGTTACTGATGACCTCAAAATCCAGTGTAGGAGAACACAGAGAGCTATTGCTAGGAGATGGCTGTTAAGCTCACTAAGTCTTCA ] [-] EMBL CD082917 [ TTANATAG TACGGTTTGTGAAGGTAGACACACACAGGTGGTTGAGGGATATGATCAGAGTTATCAGTTACTGATGACCTCAAAATCCAGTGTAGGAGAACACAGAGAGCTATTGCTAGGAGATGGCTGTTAAGCTCACTAAGTCTTCAGTAATCTATCGAATTTTTTCAATATTGGTTACTTACAATTGGTGGTACGACCTTCCTGGATAAAACTTTACTGTTCTGAACAAACAGACAACTGCACTCTGAAATCTCGTACTCATTCATTTCTTATTAAAATATTACATATACAAATAAACACACAAAATAAAAACAACCTTGGTTTCATGCTATAAAAAGGAACTCTTTCAGAAGAACTGTCGCTAAATTCTCGTAGGATTATAAAGCGTGATTTGAGAAATGGTCTCAGTTTCCCAAGGAACATCGCACTCTTTATTATATGATCTCTTAGTTGTCTAATTATATCCTGAAAACTTGTAGAACACGTTGTTTTTGTCCCGTCAAATAAGAT] consensusID : consensus_5971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence [ATTCTTCAGGATGATTAATGCAGAAATAAGTAATCCAAGCCCAGAATAAAGTCATTAGTAATTGGCTTTTTCTTTCTTCTTTAAAATCTCGCTCAATGTAATCCCTGTACATAAACCTTGGTTTCATGCTATAAAAAGGAACTCTTTCAGAAGAACTGTCGCTAAATTCTCGTAGGATTATAAAGCGTGATTTGAGAAATGGTCTCAGTTTCCCAAGGAACATCGCACTCTTTATTATATGATCTCTTAGTTGTCTA] [-] EMBL CD139932 [ATTCTTCAGGATGATTAATGCAGAAATAAGTAATCCAAGCCCAGAATAAAGTCATTAGTAATTGGCTTTTTCTTTCTTCTTTAAAATCTCGCTCAATGTAATCCCTGTACATAAACCTTGGTTTCATGCTATAAAAAGGAACTCTTTCAGAAGAACTGTCGCTAAATTCTCGTAGGATTATAAAGCGTGATTTGAGAAATGGTCTCAGTTTCCCAAGGAACATCGCACTCTTTATTATATGATCTCTTAGTTGTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5971#0 ATGTGCATACTATATTTCACTAATGTTTAAGCTTTTTACAGATCTAAACTTTTATAAAAC 60 consensus_5971#1 ------------------------------------------------------------ consensus_5971#0 TCCTAGTTCATTGTCAGTAAACGTCTTAGGGTCAGGAAGTTTTTCATGGCCAATCAATTC 120 consensus_5971#1 ------------------------------------------------------------ consensus_5971#0 TTCAGGATGATTAATGCAAAAATAAGTAATCCAAGCCCAAAATAAAGTCATTAGTAATTG 180 consensus_5971#1 ------------------------------------------------------------ consensus_5971#0 GCTTTTTCTTTCTTCTTTAAAATCTCGCTCAATGTAATCCCTGTACATAAACCTGAAAAA 240 consensus_5971#1 ------------------------------------------------------------ consensus_5971#0 GGCAAATTCGTGGTAAGGGCAAGTCTGCAATACATAAATAAAGCATGAATTACAACTTTA 300 consensus_5971#1 ------------------------------------------------------------ consensus_5971#0 AATATCAGTCTGAAAATCCACTAAGATGTCAAACAATAATAAAGGGGCTCATTTAGTTTA 360 consensus_5971#1 ------------------------------------------------------------ consensus_5971#0 AGTATTTAAATAGTTACGGTTGTGAAGGTAAACACACACAGGTGGTTGAGGGATATGATC 420 consensus_5971#1 ------------------------------------------------------------ consensus_5971#0 AGAGTTATCAGTTACTGATGACCTCAAAATCCAGTGTAGGAGAACACAGAGAGCTATTGC 480 consensus_5971#1 ------------------------------------------------------------ consensus_5971#0 TAGGAGATGGCTGTTAAGCTCACTAAGTCTTCAGTAATCTATCGAATTTTTTCAATATTG 540 consensus_5971#1 ------------------------------------------------------------ consensus_5971#0 GTTACTTACAATTGGTGGTACGACCTTCCTGGATAAAACTTTACTGTTCTGAACAAACAG 600 consensus_5971#1 ---------ATTCTTCAGGATGA--TTAATGCAGAAA---TAAGTAATCCAAGCC--CAG 44 * * * * ** ** ** * *** * * * ** * * *** consensus_5971#0 ACAACTGCACTCTGAAATCTCGTACTCATTCATTTCTTATTAAAATATTACATATACAAA 660 consensus_5971#1 AATAAAGTCATTAGTAATT---GGCTTTTTCTTTCTTCTTTAAAATCTCGCTCA---ATG 98 * * * * * *** ** *** ** * ******* * * * * consensus_5971#0 TAAACACACAAAATAAAAACAACCTTGGTTTCATGCTATAAAAAGGAACTCTTTCAGAAG 720 consensus_5971#1 TAATCCCTGTACATAAA-----CCTTGGTTTCATGCTATAAAAAGGAACTCTTTCAGAAG 153 *** * * * ***** ************************************** consensus_5971#0 AACTGTCGCTAAATTCTCGTAGGATTATAAAGCGTGATTTGAGAAATGGTCTCAGTTTCC 780 consensus_5971#1 AACTGTCGCTAAATTCTCGTAGGATTATAAAGCGTGATTTGAGAAATGGTCTCAGTTTCC 213 ************************************************************ consensus_5971#0 CAAGGAACATCGCACTCTTTATTATATGATCTCTTAGTTGTCTAATTATATCCTGAAAAC 840 consensus_5971#1 CAAGGAACATCGCACTCTTTATTATATGATCTCTTAGTTGTCTA---------------- 257 ******************************************** consensus_5971#0 TTGTAGAACACGTTGTTTTTGTCCCGTCAAATAAGAT 877 consensus_5971#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||