cluster # 5973

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Schistosoma mansoni
cluster # 5973 cluster # 5973 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5973#0 length = 629 sequences # 2

consensus_5973#1 length = 347 sequences # 1

consensusID : consensus_5973#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 629
fasta sequence

                              [GAAATCGATAATCAATCAAAGTATCTTGACCGAGCTCAAAATACTCACCCACAAAGTTCTGATTCAGTGTTATTAGACAAAACTGGAAATAATTGCCAAACCAAATATCCATTGGAAACAAATGTAAATCAATATTATGATCAAAAACAATCAGAACAACGAACTTCTGAAGAGGGTACATTTAAACACTCTGATAACTTTGTGGATTCATTATCAACAAGACCAATGGAAATAAAACACAATGATGATATTTCAGAGGTTCCTCTTCAAATGAATCAAATTCAGTCAAATTTATTATCATCAAAAAATACTGTACTATTGGAGAAATCTCCAAAACATTTGGACTCAAATGAAACTATGTCTTTATCCAATTCGGCGGCAACTACACAAGATGTTAATATATGTCCACAAGGATTATTATTTATTCCTAAAACAGAAGTGAAATCACGTATACCAGGTCATGGAGTACGTATGCATGAAAAACTTTCAGCTCGTTCAAAAAAACGGTAATTATTCTTTATTTCTTTTTGTTTGAAATAAATGTCTTTTGAAGGGGTGATCAATTGGCAACTTTGAATAATCATTGATGAATTCAGTTCATGTACTTATAAGGTTGAGTCTATCAGTTC]

[+] EMBL CD065539             [GAAATCGATAATCAATCAAAGTATCTTGACCGAGCTCAAAATACTCACCCACAAAGTTCTGATTCAGTGTTATTAGACAAAACTGGAAATAATTGCCAAACCAAATATCCATTGGAAACAAATGTAAATCAATATTATGATCAAAAACAATCAGAACAACGAACTTCTGAAGAGGGTACATTTAAACACTCTGATAACTTTGTGGATTCATTATCAACAAGACCAATGGAAATAAAACACAATGATGATATTTCAGAGGTTCCTCTTCAAATGAATCAAATTCAGTCAAATTTATTATCATCAAAAAATACTGTACTATTGGAGAAATCTCCAAAACATTTGGACTCAAATGAAACTATGTCTTTATCCAATTCGGCGGCAACTACACAAGATGTTAATATATGTCCACAAGGATTATTATTTATTCCTAAAACAGAAGTGAAATCACGTATACCAGGTCATGGAGTACGTATGCATGAAAAACTTTCAGCTCGTTCAAAAAAACGGTAATTATTCTTT                                                                                                              ]
[-] EMBL CD065461             [                                                                                                                                                                                                                  TTATCAACAAGACCAATGGAAATAAAACACAATGATGATATTTCAGAGTTTCCTCTTCAAATGAATCAAATTCAGTCAAATTTATTATCATCAAAAAATACTGTACTATTGGAGAAATCTCCCAAACATTTGGACTCAAATGAAACTATGTCTTTATCCAATTCGTCGGCAACTACACAAGATGTTAATATATGTCCACAAGGATTATTATTTATTCCTAAAACAGAAGTGAAATCACGTATACCAGGTCATGGAGTACATATGCATGAAAAACTTTCAGCTCGTTCAAAAAAACGGTAATTATTCTTTATTTCTTTTTGTTTGAAATAAATGTCTTTTGAAGGGGTGATCAATTGGCAACTTTGAATAATCATTGATGAATTCAGTTCATGTACTTATAAGGTTGAGTCTATCAGTTC]




>consensus_5973#0
GAAATCGATAATCAATCAAAGTATCTTGACCGAGCTCAAAATACTCACCCACAAAGTTCT
GATTCAGTGTTATTAGACAAAACTGGAAATAATTGCCAAACCAAATATCCATTGGAAACA
AATGTAAATCAATATTATGATCAAAAACAATCAGAACAACGAACTTCTGAAGAGGGTACA
TTTAAACACTCTGATAACTTTGTGGATTCATTATCAACAAGACCAATGGAAATAAAACAC
AATGATGATATTTCAGAGGTTCCTCTTCAAATGAATCAAATTCAGTCAAATTTATTATCA
TCAAAAAATACTGTACTATTGGAGAAATCTCCAAAACATTTGGACTCAAATGAAACTATG
TCTTTATCCAATTCGGCGGCAACTACACAAGATGTTAATATATGTCCACAAGGATTATTA
TTTATTCCTAAAACAGAAGTGAAATCACGTATACCAGGTCATGGAGTACGTATGCATGAA
AAACTTTCAGCTCGTTCAAAAAAACGGTAATTATTCTTTATTTCTTTTTGTTTGAAATAA
ATGTCTTTTGAAGGGGTGATCAATTGGCAACTTTGAATAATCATTGATGAATTCAGTTCA
TGTACTTATAAGGTTGAGTCTATCAGTTC

consensusID : consensus_5973#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence

                              [GAGTACATATGCATGAAAAACTTTCAGCTCGTTCAAAAAAACGAAACAGATAAAGTTTATTAAGCCAAATAGCTTACTTGTTTTGACTTTGGCGAAACCAAGACTCTGTATTCGACAGTTTAGAGAATAGCTTAAAGTTACCCCTGTAGGAAATTGCTTCCTACAAAGTTTCGAACAGTAAACCTGGATATACTTACAAAAATGACTTCTAATAAATACTACGATTCCGATGAGATTCCAGAGTTATCACCACATCATATGGGAGTTTATGATGAGGACCAACTTGAAAAGGACAAACCCAAAACTAATAGCATGATAGAATTAGAGTTGGCTAGATTACGTATAAC]

[+] EMBL CD067602             [GAGTACATATGCATGAAAAACTTTCAGCTCGTTCAAAAAAACGAAACAGATAAAGTTTATTAAGCCAAATAGCTTACTTGTTTTGACTTTGGCGAAACCAAGACTCTGTATTCGACAGTTTAGAGAATAGCTTAAAGTTACCCCTGTAGGAAATTGCTTCCTACAAAGTTTCGAACAGTAAACCTGGATATACTTACAAAAATGACTTCTAATAAATACTACGATTCCGATGAGATTCCAGAGTTATCACCACATCATATGGGAGTTTATGATGAGGACCAACTTGAAAAGGACAAACCCAAAACTAATAGCATGATAGAATTAGAGTTGGCTAGATTACGTATAAC]




>consensus_5973#1
GAGTACATATGCATGAAAAACTTTCAGCTCGTTCAAAAAAACGAAACAGATAAAGTTTAT
TAAGCCAAATAGCTTACTTGTTTTGACTTTGGCGAAACCAAGACTCTGTATTCGACAGTT
TAGAGAATAGCTTAAAGTTACCCCTGTAGGAAATTGCTTCCTACAAAGTTTCGAACAGTA
AACCTGGATATACTTACAAAAATGACTTCTAATAAATACTACGATTCCGATGAGATTCCA
GAGTTATCACCACATCATATGGGAGTTTATGATGAGGACCAACTTGAAAAGGACAAACCC
AAAACTAATAGCATGATAGAATTAGAGTTGGCTAGATTACGTATAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5973#0      GAAATCGATAATCAATCAAAGTATCTTGACCGAGCTCAAAATACTCACCCACAAAGTTCT 60
consensus_5973#1      ------------------------------------GAGTACATATGCATGAAAAACTTT 24
                                                           *  * *    *    ***  * *

consensus_5973#0      GATTCAGTGTTATTAGACAAAACTGGAAATAATTGCCAAACCAAATATCCATTGGAAACA 120
consensus_5973#1      CAGCTCGTTCAAAAAAACGAAACAGATAAAGTTTATTAAGCCAAATAGCTTACTTGTTTT 84
                       *    **   *  * ** **** *  **   **   ** ******* *           

consensus_5973#0      AATGTAAATCAATATTATGATCAAAAACAATCAGAACAACGAACTTCTGAAGAGGGTACA 180
consensus_5973#1      GACTTTGGCGAAACCAAGACTCTGTATTCGACAGTTTAGAGAATAGCTTAAAGTTACCCC 144
                       *  *     **    *   **   *     ***   *  ***   ** **       * 

consensus_5973#0      TTTAAACACTCTGATAACTTTGTGGATTCATTATCAACAAGACCAATGGAAATAAAACAC 240
consensus_5973#1      TGTAGGAAAT-TGCTTCCTACAAAGTTTCG--AACAGTAAACC---TGGATATACT-TAC 197
                      * **   * * ** *  **     * ***   * **  **  *   **** ***    **

consensus_5973#0      AATGATGATATTTCAGAGGTTCCTCTTCAAATGAATCAAATTCAGTCAAATTTATTATCA 300
consensus_5973#1      AAAAATGACTTCTAATAAATACTACG--ATTCCGATGAGATTC---CAGAGTTATCACCA 252
                      **  ****  * * * *  * *  *   *     ** * ****   ** * **** * **

consensus_5973#0      --TCAAAAAATACTGTACTATTGGAGAAATCTCCAAAACATTTGGACTCAAATGAA-ACT 357
consensus_5973#1      CATCATATGGGAGTTTATGATGAGGACCAACTTGAAAAGGACAAACCCAAAACTAATAGC 312
                        *** *    * * **  **  *    * **  ****        *  ***  ** *  

consensus_5973#0      ATGTCTTTATCCAATTCGGCGGCAACTACACAAGATGTTAATATATGTCCACAAGGATTA 417
consensus_5973#1      ATGATAGAATTAGAGTTGGCTA-GATTACGTATAAC------------------------ 347
                      ***     **   * * ***    * ***  *  *                         

consensus_5973#0      TTATTTATTCCTAAAACAGAAGTGAAATCACGTATACCAGGTCATGGAGTACGTATGCAT 477
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      GAAAAACTTTCAGCTCGTTCAAAAAAACGGTAATTATTCTTTATTTCTTTTTGTTTGAAA 537
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      TAAATGTCTTTTGAAGGGGTGATCAATTGGCAACTTTGAATAATCATTGATGAATTCAGT 597
consensus_5973#1      ------------------------------------------------------------
                                                                                  

consensus_5973#0      TCATGTACTTATAAGGTTGAGTCTATCAGTTC 629
consensus_5973#1      --------------------------------