cluster # 5974

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Schistosoma mansoni
cluster # 5974 cluster # 5974 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5974#0 length = 334 sequences # 1

consensus_5974#1 length = 333 sequences # 2

consensusID : consensus_5974#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence

                              [GCCCAGTTGGGCTTGGTAACTCGCCTGTTGTTTTATATTTTTAATCAGGTGATCCTAACAGTAAGTATATTTCGAGTACAGAACGCAGCAACGTAATTTCGAAATTCGTCCAGGAGAAACTTATCAGTGAACTATGTGTAGACGAGTGGAAAGATTGGCGAAAGTGCATACGAGGAAAACGAGGCGAGTGGTTTGGTACTTGGAATTGTAAACCCAAATATTTGATATTTGAACAGTGTCAGATGAGGTAAGATAATTTTACCTAGAAAAAATATACATTGTCGCTCAAACAAATAAAACTGAGTTTGACCACTTATATCGTAAGCCATCTTAA]

[+] EMBL CD094063             [GCCCAGTTGGGCTTGGTAACTCGCCTGTTGTTTTATATTTTTAATCAGGTGATCCTAACAGTAAGTATATTTCGAGTACAGAACGCAGCAACGTAATTTCGAAATTCGTCCAGGAGAAACTTATCAGTGAACTATGTGTAGACGAGTGGAAAGATTGGCGAAAGTGCATACGAGGAAAACGAGGCGAGTGGTTTGGTACTTGGAATTGTAAACCCAAATATTTGATATTTGAACAGTGTCAGATGAGGTAAGATAATTTTACCTAGAAAAAATATACATTGTCGCTCAAACAAATAAAACTGAGTTTGACCACTTATATCGTAAGCCATCTTAA]




>consensus_5974#0
GCCCAGTTGGGCTTGGTAACTCGCCTGTTGTTTTATATTTTTAATCAGGTGATCCTAACA
GTAAGTATATTTCGAGTACAGAACGCAGCAACGTAATTTCGAAATTCGTCCAGGAGAAAC
TTATCAGTGAACTATGTGTAGACGAGTGGAAAGATTGGCGAAAGTGCATACGAGGAAAAC
GAGGCGAGTGGTTTGGTACTTGGAATTGTAAACCCAAATATTTGATATTTGAACAGTGTC
AGATGAGGTAAGATAATTTTACCTAGAAAAAATATACATTGTCGCTCAAACAAATAAAAC
TGAGTTTGACCACTTATATCGTAAGCCATCTTAA

consensusID : consensus_5974#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 333
fasta sequence

                              [CAATACACAAAGTTAATCCTGGAAATCTACAAAAAATAAGATGCAAGGCTATGCTTCTTATGCTGGAGGCCCAGTTGGGCTTGGTAACTCGCCTGTTGTTTTATATTTTTAATCAGGTGATCCTAACAGAGAAACTTATCAGTGAACTATGTGTAGACGAGTGGAAAGATTGGCGAAAGTGCATACGAGGAAAACGAGGCGAGTGGTTTGGTACTTGGAATTGTAAACCCAAATATTTGATATTTGAACAGTGTCAGATGAGGTACCTTCAAGACCTAGAACAACTAAAAAAATTTGAAGAGGAATACTTAAGCTTGCGTACTGAGGTGGGGA]

[+] EMBL CD131455             [CAATACACAAAGTTAATCCTGGAAATCTACAAAAAATAAGATGCAAGGCTATGCTTCTTATGCTGGAGGCCCAGTTGGGCTTGGTAACTCGCCTGTTGTTTTATATTTTTAATCAGGTGATCCTAACAGAGAAACTTATCAGTGAACTATGTGTAGACGAGTGGAAAGATTGGCGAAAGTGCATACGAGGAAAACGAGGCGAGTGGTTTGGTACTTGGAATTGTAAACCCAAATATTTGATATTTGAACAGTGTCAGATGAGGTACCTTCAAGACCTAGAACAACTAAAAAAATTTGAAGAGGAATACTTAAGCTTGCGTA            ]
[-] EMBL CD179248             [                                                                                                                                                                  GGAAAGATTGGAGAAAGTGCATACGAGGAGAACGAGGGGAGTGGTTTGGTACTTGGAATTGTAAACCCAAATATTTGATATTTGAACAGTGTCAGATGAGGTACCTTCAAGACCTAGAACAAGTAAAAAAATTTGAAGAGGAATACTTAAGCTTGCGTACTGAGGTGGGGA]




>consensus_5974#1
CAATACACAAAGTTAATCCTGGAAATCTACAAAAAATAAGATGCAAGGCTATGCTTCTTA
TGCTGGAGGCCCAGTTGGGCTTGGTAACTCGCCTGTTGTTTTATATTTTTAATCAGGTGA
TCCTAACAGAGAAACTTATCAGTGAACTATGTGTAGACGAGTGGAAAGATTGGCGAAAGT
GCATACGAGGAAAACGAGGCGAGTGGTTTGGTACTTGGAATTGTAAACCCAAATATTTGA
TATTTGAACAGTGTCAGATGAGGTACCTTCAAGACCTAGAACAACTAAAAAAATTTGAAG
AGGAATACTTAAGCTTGCGTACTGAGGTGGGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5974#0      ------GCCCAGTTGGGCTTGGTAACTCGCC----------TGTTGTTTTATATTTTTAA 44
consensus_5974#1      CAATACACAAAGTTAATCCTGGAAATCTACAAAAAATAAGATGCAAGGCTATGCTTCTTA 60
                             *  ****   * *** **    *           **      ***  ** * *

consensus_5974#0      T-CAGGTGATCCTAACAGTAAGTATATTTCGAGTACAGAACGCAGCAACGTAATTTCGAA 103
consensus_5974#1      TGCTGGAGGCCCAGTTGGGCTTGGTAACTCGCCTGTTG--TTTTATATTTTTAATCAGGT 118
                      * * ** *  **     *      **  ***  *   *        *   * * *  *  

consensus_5974#0      ATTCGTCCAGGAGAAACTTATCAGTGAACTATGTGTAGACGAGTGGAAAGATTGGCGAAA 163
consensus_5974#1      GATCCTAACAGAGAAACTTATCAGTGAACTATGTGTAGACGAGTGGAAAGATTGGCGAAA 178
                        ** *    **************************************************

consensus_5974#0      GTGCATACGAGGAAAACGAGGCGAGTGGTTTGGTACTTGGAATTGTAAACCCAAATATTT 223
consensus_5974#1      GTGCATACGAGGAAAACGAGGCGAGTGGTTTGGTACTTGGAATTGTAAACCCAAATATTT 238
                      ************************************************************

consensus_5974#0      GATATTTGAACAGTGTCAGATGAGGTAAGATAATTTTACCTAGAAAAAATATACATTGTC 283
consensus_5974#1      GATATTTGAACAGTGTCAGATGAGGTACCTTCAAG--ACCTAGAACAACTAAAAAA---- 292
                      ***************************   * *    ******** ** ** * *     

consensus_5974#0      GCTCAAACAAATAAAACTGAGTTTGACCACTTATATCGTAAGCCATCTTAA 334
consensus_5974#1      ATTTGAAGAGGAATACTTAAGCTTGCGTACTGAGGTGGGGA---------- 333
                        *  ** *   * *  * ** ***   *** *  * *  *