These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 544 fasta sequence [TCACGGAACTTTACTGATTCGTATACTTGACTTTGAGTCACATTCAGTGTATGGAAGTTAGTGATACTCCCTTGGTACCCAAACTAAAGTAGGTAGTGTAGTTAAAACTTGAGACTCATTGACTGAAAGTTGAACGCTTCAACCATTTGATGAATTTCAAGAAATTGGCTAATTTGTCAATAGATATTTTAAAAATGGTAAGACTTATCCAGTTAAAACGCTGTAATGAAGGATTTGAATAAAGCAATAGTTTTCACTCNGTTATTACCAATATTTATTTAACCAGCAGGGCAAAAAATAGATTTTTCTTATAGGAAGAATTATATCTGGTCGTATTTTCTGATCTACCAGTTCCCAAAAAGTTTCGGAAATATCCCAATAACTAGTGTAATAAGAATCATTTGTCAATCGTTGATTCGTATGCATTGCCCTTGGTCGGATTGCCAATGTTCTCAAGTGAACTATTACTTCATCTACTTAGTACTAGTAATTAAAAACTTGAAATGTAAAGCATCATGTTGATTTTTCAAGTTCCGTGAGCCGT] [+] EMBL CD065637 [TCACGGAACTTTACTGATTCGTATACTTGACTTTGAGTCACATTCAGTGTATGGAAGTTAGTGATACTCCCTTGGTACCCAAACTAAAGTAGGTAGTGTAGTTAAAACTTGAGACTCATTGACTGAAAGTTGAACGCTTCAACCATTTGATGAATTTCAAGAAATTGGCTAATTTGTCAATAGATATTTTAAAAATGGTAAGACTTATCCAGTTAAAACGCTGTAATGAAGGATTTGAATAAAGCAATAGTTTTCACTCNGTTATTACCAATATTTATTTAACCAGCAGGGCAAAAAATAGATTTTTCTTATAGGAAGAATTATATCTGGTCGTATTTTCTGATCTACCAGTTCCCAAAAAGTTTCGGAAATATCCCAATAACTAGTGTAATAAGAATCATTTGTCAATCGTTGATTCGTATGCATTGCCCTTGGTCGGATTGCCAATGTTCTCAAGTGAACTATTACTTCATCTACTTAGTACTAGTAATTAAAAACTTGAAATGTAAAGCATCATGT ] [-] EMBL CD065483 [ ACCCAAACTAAAGTAGGTAGTGTAGTTAAAACTTGAGACTCATTGACTGAAAGTTGAACGCTTCAACCATTTGATGAATTTCAAGAAATTGGCTAATTTGTCGATAGATATTTTAAAAATGGTAAGACTTATCCAGTTAAAACGCTGTAATGAAGGATTTGAATAAAGCAATAGTTTTCACTC GTTATTACCAATATTTATTTAACTAGCAGGGCAAAAAATAGATTTTTCTTATAGGAAGAATTATATCTGGTCGTATTTTCTGATCTACCAGTTCCCAGAAAGTTTCGGAAATATCCCAATAACTAGTGTAATAAGAATCATTTGTCTATCGTTGATTCGTATGCATTGCCCTTGGTCGGATTGCCAATGTTCTCAAGTGAACTATTACTTCATCTACTTAGTACTAGTAATTAAAAACTTGAAATGTAAAGCATC TGTTGATTTTTCAAGTTCCGTGAGCCGT] consensusID : consensus_5979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [CTAACATGTAATTTTCTTATCATAATTGAAGTGAACATAAAACCAAGTCATTCAGTTGTCTTAGAGCATTCTTTGTTTTTATTGTCGTGATCTTTGAAAAAAATGTGTTAAAAATAGGACAAACTAAGAACGTTATACATATATGAACTTATCATTATTGTTAAATCATTTACCAGGTACTGATTCGTATACTTGACTTTGAGTCACATTCAGTGTATGGAAGTTAGTGATACTCCCTTGGTACCCAAACTAAAGTAGGTAGTGTAGTTAAAACTTGAGACTCATTGACTGAAAGTTGAACGCTTCAACCATTTGATGAATTTCAAGAAATTGGCTAATTTGTCAATAGATATTTTAAAAATG] [-] EMBL CD164109 [CTAACATGTAATTTTCTTATCATAATTGAAGTGAACATAAAACCAAGTCATTCAGTTGTCTTAGAGCATTCTTTGTTTTTATTGTCGTGATCTTTGAAAAAAATGTGTTAAAAATAGGACAAACTAAGAACGTTATACATATATGAACTTATCATTATTGTTAAATCATTTACCAGGTACTGATTCGTATACTTGACTTTGAGTCACATTCAGTGTATGGAAGTTAGTGATACTCCCTTGGTACCCAAACTAAAGTAGGTAGTGTAGTTAAAACTTGAGACTCATTGACTGAAAGTTGAACGCTTCAACCATTTGATGAATTTCAAGAAATTGGCTAATTTGTCAATAGATATTTTAAAAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5979#0 TCACGGAACTTTACTGATTCGTATACTTGACTTTG-AGTCACATTCAGTGTATGGAAGTT 59 consensus_5979#1 -------------CTAACATGTAATTTTCTTATCATAATTGAAGTGAACATA--AAACCA 45 ** * *** ** * * * * * * ** ** consensus_5979#0 AGTGATACTCCCTTGGTACCCAAACTAAAGTAGGTAGTGTAGTTAAAACTTGAGACTCAT 119 consensus_5979#1 AGTCATTCAGTTGTCTTAGAGCATTCTTTGTTTTTATTGTCGT-GATCTTTGAAAAAAAT 104 *** ** * * ** * ** ** *** ** * **** * ** consensus_5979#0 TGACTGAAAGTTGAACGCTTCAACCATTTGATGAATTTCAAGAAATTGGCTAATTTGTCA 179 consensus_5979#1 GTGTTAAAAATAGGACAAACTAAGAACGTTATACATAT-ATGAACTTATCA---TTATTG 160 * *** * * ** ** * * ** ** * * *** ** * ** * consensus_5979#0 ATAGATATTTTAAAAATGGTAAGACTTATCCAGTTAAAACGCTGTAATGAAGGATTTGAA 239 consensus_5979#1 TTAAATCATTTACCA--GGTA---CTGATTCGTATACTTGACTTTGAGTCACATTCAGTG 215 ** ** **** * **** ** ** * ** ** * * * * * consensus_5979#0 TAAAGCAATAGTTTTCACTCNGTTATTACCAATATTTATTTAACCAGCAGGGCAAAAAAT 299 consensus_5979#1 TATGGAAGTTAGTGATACTCCCTTGGTACCCAAACTAAAGTAGGTAGTGTAGTTAAAACT 275 ** * * * * **** ** **** * * * * ** ** * **** * consensus_5979#0 AGATTTTTCTTATAGGAAGAATTATATCTGGTCGTATTTTCTGATCTACCAGTTCCCAAA 359 consensus_5979#1 TGAGACTCATT-------GACTGAAAGTTGAACGCTTCAACCATTTGATGAATTTCAAGA 328 ** * ** ** * * * ** ** * * * * * ** * * * consensus_5979#0 AAGTTTCGGAAATATCCCAATAACTAGTGTAATAAGAATCATTTGTCAATCGTTGATTCG 419 consensus_5979#1 AA--TTGGCTAATTTGTCAATAGATATTTTAAAAATG----------------------- 363 ** ** * *** * ***** ** * *** ** consensus_5979#0 TATGCATTGCCCTTGGTCGGATTGCCAATGTTCTCAAGTGAACTATTACTTCATCTACTT 479 consensus_5979#1 ------------------------------------------------------------ consensus_5979#0 AGTACTAGTAATTAAAAACTTGAAATGTAAAGCATCATGTTGATTTTTCAAGTTCCGTGA 539 consensus_5979#1 ------------------------------------------------------------ consensus_5979#0 GCCGT 544 consensus_5979#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||