cluster # 5979

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Schistosoma mansoni
cluster # 5979 cluster # 5979 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5979#0 length = 544 sequences # 2

consensus_5979#1 length = 363 sequences # 1

consensusID : consensus_5979#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 544
fasta sequence

                              [TCACGGAACTTTACTGATTCGTATACTTGACTTTGAGTCACATTCAGTGTATGGAAGTTAGTGATACTCCCTTGGTACCCAAACTAAAGTAGGTAGTGTAGTTAAAACTTGAGACTCATTGACTGAAAGTTGAACGCTTCAACCATTTGATGAATTTCAAGAAATTGGCTAATTTGTCAATAGATATTTTAAAAATGGTAAGACTTATCCAGTTAAAACGCTGTAATGAAGGATTTGAATAAAGCAATAGTTTTCACTCNGTTATTACCAATATTTATTTAACCAGCAGGGCAAAAAATAGATTTTTCTTATAGGAAGAATTATATCTGGTCGTATTTTCTGATCTACCAGTTCCCAAAAAGTTTCGGAAATATCCCAATAACTAGTGTAATAAGAATCATTTGTCAATCGTTGATTCGTATGCATTGCCCTTGGTCGGATTGCCAATGTTCTCAAGTGAACTATTACTTCATCTACTTAGTACTAGTAATTAAAAACTTGAAATGTAAAGCATCATGTTGATTTTTCAAGTTCCGTGAGCCGT]

[+] EMBL CD065637             [TCACGGAACTTTACTGATTCGTATACTTGACTTTGAGTCACATTCAGTGTATGGAAGTTAGTGATACTCCCTTGGTACCCAAACTAAAGTAGGTAGTGTAGTTAAAACTTGAGACTCATTGACTGAAAGTTGAACGCTTCAACCATTTGATGAATTTCAAGAAATTGGCTAATTTGTCAATAGATATTTTAAAAATGGTAAGACTTATCCAGTTAAAACGCTGTAATGAAGGATTTGAATAAAGCAATAGTTTTCACTCNGTTATTACCAATATTTATTTAACCAGCAGGGCAAAAAATAGATTTTTCTTATAGGAAGAATTATATCTGGTCGTATTTTCTGATCTACCAGTTCCCAAAAAGTTTCGGAAATATCCCAATAACTAGTGTAATAAGAATCATTTGTCAATCGTTGATTCGTATGCATTGCCCTTGGTCGGATTGCCAATGTTCTCAAGTGAACTATTACTTCATCTACTTAGTACTAGTAATTAAAAACTTGAAATGTAAAGCATCATGT                         ]
[-] EMBL CD065483             [                                                                            ACCCAAACTAAAGTAGGTAGTGTAGTTAAAACTTGAGACTCATTGACTGAAAGTTGAACGCTTCAACCATTTGATGAATTTCAAGAAATTGGCTAATTTGTCGATAGATATTTTAAAAATGGTAAGACTTATCCAGTTAAAACGCTGTAATGAAGGATTTGAATAAAGCAATAGTTTTCACTC GTTATTACCAATATTTATTTAACTAGCAGGGCAAAAAATAGATTTTTCTTATAGGAAGAATTATATCTGGTCGTATTTTCTGATCTACCAGTTCCCAGAAAGTTTCGGAAATATCCCAATAACTAGTGTAATAAGAATCATTTGTCTATCGTTGATTCGTATGCATTGCCCTTGGTCGGATTGCCAATGTTCTCAAGTGAACTATTACTTCATCTACTTAGTACTAGTAATTAAAAACTTGAAATGTAAAGCATC TGTTGATTTTTCAAGTTCCGTGAGCCGT]




>consensus_5979#0
TCACGGAACTTTACTGATTCGTATACTTGACTTTGAGTCACATTCAGTGTATGGAAGTTA
GTGATACTCCCTTGGTACCCAAACTAAAGTAGGTAGTGTAGTTAAAACTTGAGACTCATT
GACTGAAAGTTGAACGCTTCAACCATTTGATGAATTTCAAGAAATTGGCTAATTTGTCAA
TAGATATTTTAAAAATGGTAAGACTTATCCAGTTAAAACGCTGTAATGAAGGATTTGAAT
AAAGCAATAGTTTTCACTCNGTTATTACCAATATTTATTTAACCAGCAGGGCAAAAAATA
GATTTTTCTTATAGGAAGAATTATATCTGGTCGTATTTTCTGATCTACCAGTTCCCAAAA
AGTTTCGGAAATATCCCAATAACTAGTGTAATAAGAATCATTTGTCAATCGTTGATTCGT
ATGCATTGCCCTTGGTCGGATTGCCAATGTTCTCAAGTGAACTATTACTTCATCTACTTA
GTACTAGTAATTAAAAACTTGAAATGTAAAGCATCATGTTGATTTTTCAAGTTCCGTGAG
CCGT

consensusID : consensus_5979#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [CTAACATGTAATTTTCTTATCATAATTGAAGTGAACATAAAACCAAGTCATTCAGTTGTCTTAGAGCATTCTTTGTTTTTATTGTCGTGATCTTTGAAAAAAATGTGTTAAAAATAGGACAAACTAAGAACGTTATACATATATGAACTTATCATTATTGTTAAATCATTTACCAGGTACTGATTCGTATACTTGACTTTGAGTCACATTCAGTGTATGGAAGTTAGTGATACTCCCTTGGTACCCAAACTAAAGTAGGTAGTGTAGTTAAAACTTGAGACTCATTGACTGAAAGTTGAACGCTTCAACCATTTGATGAATTTCAAGAAATTGGCTAATTTGTCAATAGATATTTTAAAAATG]

[-] EMBL CD164109             [CTAACATGTAATTTTCTTATCATAATTGAAGTGAACATAAAACCAAGTCATTCAGTTGTCTTAGAGCATTCTTTGTTTTTATTGTCGTGATCTTTGAAAAAAATGTGTTAAAAATAGGACAAACTAAGAACGTTATACATATATGAACTTATCATTATTGTTAAATCATTTACCAGGTACTGATTCGTATACTTGACTTTGAGTCACATTCAGTGTATGGAAGTTAGTGATACTCCCTTGGTACCCAAACTAAAGTAGGTAGTGTAGTTAAAACTTGAGACTCATTGACTGAAAGTTGAACGCTTCAACCATTTGATGAATTTCAAGAAATTGGCTAATTTGTCAATAGATATTTTAAAAATG]




>consensus_5979#1
CTAACATGTAATTTTCTTATCATAATTGAAGTGAACATAAAACCAAGTCATTCAGTTGTC
TTAGAGCATTCTTTGTTTTTATTGTCGTGATCTTTGAAAAAAATGTGTTAAAAATAGGAC
AAACTAAGAACGTTATACATATATGAACTTATCATTATTGTTAAATCATTTACCAGGTAC
TGATTCGTATACTTGACTTTGAGTCACATTCAGTGTATGGAAGTTAGTGATACTCCCTTG
GTACCCAAACTAAAGTAGGTAGTGTAGTTAAAACTTGAGACTCATTGACTGAAAGTTGAA
CGCTTCAACCATTTGATGAATTTCAAGAAATTGGCTAATTTGTCAATAGATATTTTAAAA
ATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5979#0      TCACGGAACTTTACTGATTCGTATACTTGACTTTG-AGTCACATTCAGTGTATGGAAGTT 59
consensus_5979#1      -------------CTAACATGTAATTTTCTTATCATAATTGAAGTGAACATA--AAACCA 45
                                   ** *   ***   **    *   * *   * * *   **   **   

consensus_5979#0      AGTGATACTCCCTTGGTACCCAAACTAAAGTAGGTAGTGTAGTTAAAACTTGAGACTCAT 119
consensus_5979#1      AGTCATTCAGTTGTCTTAGAGCATTCTTTGTTTTTATTGTCGT-GATCTTTGAAAAAAAT 104
                      *** ** *     *  **    *      **   ** *** **  *   **** *   **

consensus_5979#0      TGACTGAAAGTTGAACGCTTCAACCATTTGATGAATTTCAAGAAATTGGCTAATTTGTCA 179
consensus_5979#1      GTGTTAAAAATAGGACAAACTAAGAACGTTATACATAT-ATGAACTTATCA---TTATTG 160
                          * *** * * **     **  *  * **  ** * * *** **  *    ** *  

consensus_5979#0      ATAGATATTTTAAAAATGGTAAGACTTATCCAGTTAAAACGCTGTAATGAAGGATTTGAA 239
consensus_5979#1      TTAAATCATTTACCA--GGTA---CTGATTCGTATACTTGACTTTGAGTCACATTCAGTG 215
                       ** **  ****  *  ****   ** ** *   **     ** * *   *   *  *  

consensus_5979#0      TAAAGCAATAGTTTTCACTCNGTTATTACCAATATTTATTTAACCAGCAGGGCAAAAAAT 299
consensus_5979#1      TATGGAAGTTAGTGATACTCCCTTGGTACCCAAACTAAAGTAGGTAGTGTAGTTAAAACT 275
                      **  * * *   *   ****  **  **** * * * *  **   **    *  **** *

consensus_5979#0      AGATTTTTCTTATAGGAAGAATTATATCTGGTCGTATTTTCTGATCTACCAGTTCCCAAA 359
consensus_5979#1      TGAGACTCATT-------GACTGAAAGTTGAACGCTTCAACCATTTGATGAATTTCAAGA 328
                       **   *  **       ** * * *  **  **  *   *   *  *  * ** * * *

consensus_5979#0      AAGTTTCGGAAATATCCCAATAACTAGTGTAATAAGAATCATTTGTCAATCGTTGATTCG 419
consensus_5979#1      AA--TTGGCTAATTTGTCAATAGATATTTTAAAAATG----------------------- 363
                      **  ** *  *** *  *****  ** * *** **                         

consensus_5979#0      TATGCATTGCCCTTGGTCGGATTGCCAATGTTCTCAAGTGAACTATTACTTCATCTACTT 479
consensus_5979#1      ------------------------------------------------------------
                                                                                  

consensus_5979#0      AGTACTAGTAATTAAAAACTTGAAATGTAAAGCATCATGTTGATTTTTCAAGTTCCGTGA 539
consensus_5979#1      ------------------------------------------------------------
                                                                                  

consensus_5979#0      GCCGT 544
consensus_5979#1      -----