These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5990#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 975 fasta sequence [GTTGCATGCACTCATTCTATTGCTTGAATTCAAGGAGTCTTCCATATTGTTTAACGAATCAAGTAGTATCTTGTTTAATCATTAGTATTCGTTCAAATGATGGGAGCTCTCAAAGATGGATTGCACGTCAACGTTCAGATCCTTATGTAAAACGTGCTCATCTTGAAAGTTATAGATGTCGTAGCGCATTCAAATTATTACAATTAAATGATAAAATTTCCGGTGGAATTTTTAAACCTGGTGATATTGTTGTGGATTGTGGTGCTGCACCAGGATCATGGTGTCAAGTAGCTTCATCTTTAACCAATTGTAATAATAATAATAATAATCTCAAAGCCTCAAATAATCAAAATAAAGGTTTAGTAATTGCTTTTGATTTATTAAACTTTGCACCATTACCTGGTGTTATTACACATTGTGGTGTTGATTTAAATAATTGGTCTGAATGTATAAATTTAATTAATCAATCAATTTCCAGTCATTTTAACAATAATAATAATAACGACGGTAAGCCGTTACAACCCGAGAAACAGAAATCACTTCCAGGTGTTGATGTTGTTCTCAGTGACATAGCTCCAAATGTGGCAGGAATGCGTGAAATCGATATACCAGCTATGATGAAATTAGCGTATAATATTNTACGAGTAGCTATCAGTGTTTCAAAAGAAGGNGCCACTTTTGTGATTAAATTATTCCANNAGTCAGAAGCTGAAGAATNTANNACAACCGNTTCACAATTNTATACGTTAAATTNCGAAGTGTCCTTCATTTTTACGCGTTTATTNAACCNGNAGCTAGTCGGAAAGAATCATCAGAAATCTATTTAGTTGCTAGAGGGTTTCAACTTCTCAAGTAACAGGACAANTAGNCCNTATTNCCATCTTATCCATATTACATTTTACAATGNCATTGAAATAAGAAATACGTTTTATTCTCAGCTTTCTTGNTGATCTACAGAGTAAATCCAGATGTCAT] [+] EMBL CD081995 [GTTGCATGCACTCATTCTATTGCTTGAATTCAAGGAGTCTTCCATATTGTTTAACGAATCAAGTAGTATCTTGTTTAATCATTAGTATTCGTTCAAATGATGGGAGCTCTCAAAGATGGATTGCACGTCAACGTTCAGATCCTTATGTAAAACGTGCTCATCTTGAAAGTTATAGATGTCGTAGCGCATTCAAATTATTACAATTAAATGATAAAATTTCCGGTGGAATTTTTAAACCTGGTGATATTGTTGTGGATTGTGGTGCTGCACCAGGATCATGGTGTCAAGTAGCTTCATCTTTAACCAATTGTAATAATAATAATAATAATCTCAAAGCCTCAAATAATCAAAATAAAGGTTTAGTAATTGCTTTTGATTTATTAAACTTTGCACCATTACCTGGTGTTATTACACATTGTGGTGTTGATTTAAATAATTGGTCTGAATGTATAAATTTAATTAATCAATCAATTTCCAGTCATTTTAACAATAATAATAATAACGACGGTAAGCCGTTACAACCCGAGAAACAGAAATCACTTCCAGGTGTTGATGTTGTTCTCAGTGACATAGCTCCAAATGTGGCAGGAATGCGTGAAATCGATATACCAGCTATGATGAAATTAGCGTATAATATTNTACGAGTAGCTATCAGTGTTTCAAAAGAAGGNGCCACTTTTGTGATTAAATTATTCCANNAGTCAGAAGCTGAAGAATNTANNACAACCGNTTCACAATTNTATACGTTAAATTNCGAAGTGTCCTTCATTTTTACGCGTTTATTNAACCNGNAGCTAGTCGGAAAGAATCATCAGAAATCTATTTAGTTGCTAGAGGGTTTCAACTTCTCAAGTAACAGGACAANTAGNCCNTATTNCCATCTTATCCATATTACATTTTACAATGNCATTGAAATAAGAAATACGTTTTATTCTCAGCTTTCTTGNTGATCTACAGAGTAAATCCAGATGTCAT] consensusID : consensus_5990#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CAAATAATCAAAATAAAGGTTTAGTAATTGCTTTTGATTTATTAAACTTTGCACCATTACCTGGTGTTATTACACATTGTGGTGTTGATTTAAATAATTGGTCTGAATGTATAAATTTAATTAATCAATCAATTTCCAGTCATTTTAACAATAATAATAATAACGACGGTAAGCCGTTACAACCCGAGAAACAGAAATCACTTCCAGGTGTTGATGTTGTTCTCAGTGACATAGCTCCAAATGTGGCAGGAATGCGTGAAATCGATATACCAGCTATGATGAAATTAGCGTATAATATTTTACGAGTAGCTATCAGTGTTTCAAAAGAAGGGGCCACTTTTGTGATTAAATTATTCCAAAGTCAAGAAGCTGAAGAATTTAAACAAACCGTTTCACAATTTTATACGTTAAATTCGAAGTGTCCTTCATTTACGCGTTTTATTAAACCGGAAGCTAGTCGGAAAGAGTCATCAGAAATCTATTTAGTTGCTAGAGGTTTTCAACTTCCTCAAAGTAAACAGGACAATTAAGTCCTTATTTTCCATCATATATCCATATTTACCATTTTAACATTGTACATTTGAAATAAAGTAAATAACCGCTTTTATTTCATACAGCTTTATCATTGGATAGATCTAACAAGAGTGTAAATACCAAGATTAGTCGAATAAAATAA] [-] EMBL CD075607 [CAAATAATCAAAATAAAGGTTTAGTAATTGCTTTTGATTTATTAAACTTTGCACCATTACCTGGTGTTATTACACATTGTGGTGTTGATTTAAATAATTGGTCTGAATGTATAAATTTAATTAATCAATCAATTTCCAGTCATTTTAACAATAATAATAATAACGACGGTAAGCCGTTACAACCCGAGAAACAGAAATCACTTCCAGGTGTTGATGTTGTTCTCAGTGACATAGCTCCAAATGTGGCAGGAATGCGTGAAATCGATATACCAGCTATGATGAAATTAGCGTATAATATTTTACGAGTAGCTATCAGTGTTTCAAAAGAAGGGGCCACTTTTGTGATTAAATTATTCCAAAGTCAAGAAGCTGAAGAATTTAAACAAACCGTTTCACAATTTTATACGTTAAATTCGAAGTGTCCTTCATTTACGCGTTTTATTAAACCGGAAGCTAGTCGGAAAGAGTCATCAGAAATCTATTTAGTTGCTAGAGGTTTTCAACTTCCTCAAAGTAAACAGGACAATTAAGTCCTTATTTTCCATCATATATCCATATTTACCATTTTAACATTGTACATTTGAAATAAAGTAAATAACCGCTTTTATTTCATACAGCTTTATCATTGGATAGATCTAACAAGAGTGTAAATACCAAGATTAGTCGAATAAAATAA] consensusID : consensus_5990#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [ACTGGCTCAATGTTTTGGCTATGCTGTTTGATTAGTATAAATGGTAAACTGGATTTATATACCACAGGTTACCGAAGAAATATAATTATGACTCTTGAGTCATGTTTTTGGGCAGCATTCGGTGCAATACTACCGGATATTGATCATTTTATAGCTTCAAGAAGTACAAGCATTGAACACTCATTCTATTGCTTGAATTCAAGGAGTCTTCCATATTGTTTAACGAATCAAGTAGTATCTTGTTTAATCATTAGTATTCGTTCAAATGATGGGAGCTCTCAAAGATGGATTGCACGTCAACGTTCAGATCCTTATGTAAAACGTGCTCATCTTGAAAGTTATAGATGTCGTAGCGCATTCAAATTATTACAATTAAATGATAAAATTTNCCGGTGGAATTTTTAAACCTGGTGAGCTNCAGAGATTCT] [-] EMBL CD128862 [ACTGGCTCAATGTTTTGGCTATGCTGTTTGATTAGTATAAATGGTAAACTGGATTTATATACCACAGGTTACCGAAGAAATATAATTATGACTCTTGAGTCATGTTTTTGGGCAGCATTCGGTGCAATACTACCGGATATTGATCATTTTATAGCTTCAAGAAGTACAAGCATTGAACACTCATTCTATTGCTTGAATTCAAGGAGTCTTCCATATTGTTTAACGAATCAAGTAGTATCTTGTTTAATCATTAGTATTCGTTCAAATGATGGGAGCTCTCAAAGATGGATTGCACGTCAACGTTCAGATCCTTATGTAAAACGTGCTCATCTTGAAAGTTATAGATGTCGTAGCGCATTCAAATTATTACAATTAAATGATAAAATTTNCCGGTGGAATTTTTAAACCTGGTGAGCTNCAGAGATTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5990#0 GTTGCATGCACTCATTCTATTGCTTGAATTCAAGGAGTCTTCCATATTGTTTAACGAATC 60 consensus_5990#1 ------------------------------------------------------------ consensus_5990#2 ------------------------------------------------------------ consensus_5990#0 AAGTAGTATCTTGTTTAATCATTAGTATTCGTTCAAATGATGGGAGCTCTCAAAGATGGA 120 consensus_5990#1 ------------------------------------------------------------ consensus_5990#2 ------------------------------------------------------------ consensus_5990#0 TTGCACGTCAACGTTCAGATCCTTATGTAAAACGTGCTCATCTTGAAAGTTATAGATGTC 180 consensus_5990#1 ------------------------------------------------------------ consensus_5990#2 ------------------------------------------------------------ consensus_5990#0 GTAGCGCATTCAAATTATTACAATTAAATGATAAAATTTCCGGTGGAATTTTTAAACCTG 240 consensus_5990#1 ------------------------------------------------------------ consensus_5990#2 ------------------------------------------------------------ consensus_5990#0 GTGATATTGTTGTGGATTGTGGTGCTGCACCAGGATCATGGTGTCAAGTAGCTTCATCTT 300 consensus_5990#1 ------------------------------------------------------------ consensus_5990#2 ------------------------------------------------------------ consensus_5990#0 TAACCAATTGTAATAATAATAATAATAATCTCAAAGCCTCAAATAATCAAAATAAAGGTT 360 consensus_5990#1 ---------------------------------------CAAATAATCAAAATAAAGGTT 21 consensus_5990#2 ------------------------------------------------------------ consensus_5990#0 TAGTAATTGCTTTTGATTTATTAAACTTTGCACCATTACCTGGTGTTATTACACATTGTG 420 consensus_5990#1 TAGTAATTGCTTTTGATTTATTAAACTTTGCACCATTACCTGGTGTTATTACACATTGTG 81 consensus_5990#2 -----------ACTGGCTCAATGT-TTTGGCTATGCTGTTTGAT--TAGTATAAATGGTA 46 ** * * * ** ** * ** * ** ** * ** ** consensus_5990#0 GTGTTGATTTAAATAATTGGTCTGAATGTATAAATTTAATTAATCAATCAATTTCCAGTC 480 consensus_5990#1 GTGTTGATTTAAATAATTGGTCTGAATGTATAAATTTAATTAATCAATCAATTTCCAGTC 141 consensus_5990#2 AACTGGATTTATATACCACAGGTTACCGAAGAAATATAATTA-----TGACTCTTGAGTC 101 * ****** *** * * * * **** ****** * * * * **** consensus_5990#0 ATTTTAACAATAATAATAATAACGACGGTAAGCCGTTACAACCCGAGAAACAGAAATCAC 540 consensus_5990#1 ATTTTAACAATAATAATAATAACGACGGTAAGCCGTTACAACCCGAGAAACAGAAATCAC 201 consensus_5990#2 ATGTTTTTGG--GCAGCATT-----CGGTG---CAATACTACC----GGATATTGATCAT 147 ** ** * * * **** * *** *** * * **** consensus_5990#0 TTCCAGGTGTTGATGT-TGTTCTCAGTGACATAGCTCCAAATGTGGCAGGAATGCGTGAA 599 consensus_5990#1 TTCCAGGTGTTGATGT-TGTTCTCAGTGACATAGCTCCAAATGTGGCAGGAATGCGTGAA 260 consensus_5990#2 TTTATAGCTTCAAGAAGTACAAGCATTGA-ACA-CTCATTCTATTGCTTGAATTCAAGGA 205 ** * * * * ** *** * * *** * * ** **** * * * consensus_5990#0 ATCGATATACCAGCTATGATGAAATTAGCGTATAATATTNTACG-AGTAGCTATCAGTGT 658 consensus_5990#1 ATCGATATACCAGCTATGATGAAATTAGCGTATAATATTTTACG-AGTAGCTATCAGTGT 319 consensus_5990#2 GTC----TTCCATAT-TGTTTAACGAATCAAGTAGTATCTTGTTTAATCATTAGTATTCG 260 ** * *** * ** * ** * * ** *** * * * ** * * consensus_5990#0 TTCAAAAGAAGGNGCCACTTTTGTGATTAAATTATTCCANNAGTCAGAAGCTGAAGAATN 718 consensus_5990#1 TTCAAAAGAAGGGGCCACTTTTGTGATTAAATTATTCCAAAGTCAAGAAGCTGAAGAATT 379 consensus_5990#2 TTCAAATGATGGGA--GCTCTCAAAGATGGATTGC----ACGTCAA--CGTTCAGATCCT 312 ****** ** ** ** * * *** * * * * consensus_5990#0 TANNACAACCGNTTCACAATTNTATACGTTAAATTNCGAAGTGTCCTTCATTTTTACGCG 778 consensus_5990#1 TAAACAAACCGTTTCACAATTTTATACGTTAAATTC-GAAGTGTCCTTCATTTACGCGT- 437 consensus_5990#2 TATGTAAAACGTGCTCATCTTGAAAGTTATAGATGTCGTAGCGCATTCAAATTA----TT 368 ** ** ** ** * ** ** * ** * * * ** consensus_5990#0 TTTATTNAACCNGNAGCTAGTCGGAAAGAATCATCAGAAATCTATTTAGTTGCTAGAGGG 838 consensus_5990#1 TTTATTAAACCGGAAGCTAGTCGGAAAGAGTCATCAGAAATCTATTTAGTTGCTAGAGGT 497 consensus_5990#2 ACAATTAAATGATAAAATTTNCCGGTGGAATTTTT--AAACCTGGTGAGCTNC-AGAGAT 425 *** ** * * * * ** * * *** ** * ** * * **** consensus_5990#0 TTTCAACTTCTC--AAGTAA-CAGGACAANTA-GNCCNTATTN-CCATCTTAT--CCATA 891 consensus_5990#1 TTTCAACTTCCTCAAAGTAAACAGGACAATTAAGTCCTTATTTTCCATCATATATCCATA 557 consensus_5990#2 TCT--------------------------------------------------------- 428 * * consensus_5990#0 TT----------ACATTTTACAATGNCATTGAAATAAGAAATACGTTTTATTCT---CAG 938 consensus_5990#1 TTTACCATTTTAACATTGTACATTTGAAATAAAGTAAATAACCGCTTTTATTTCATACAG 617 consensus_5990#2 ------------------------------------------------------------ consensus_5990#0 CTTTCTTGNTG-----ATCTAC----AGAGTAAATCCAGATGTCAT------------- 975 consensus_5990#1 CTTTATCATTGGATAGATCTAACAAGAGTGTAAATACCAAGATTAGTCGAATAAAATAA 676 consensus_5990#2 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||