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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5990#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 975 fasta sequence
[GTTGCATGCACTCATTCTATTGCTTGAATTCAAGGAGTCTTCCATATTGTTTAACGAATCAAGTAGTATCTTGTTTAATCATTAGTATTCGTTCAAATGATGGGAGCTCTCAAAGATGGATTGCACGTCAACGTTCAGATCCTTATGTAAAACGTGCTCATCTTGAAAGTTATAGATGTCGTAGCGCATTCAAATTATTACAATTAAATGATAAAATTTCCGGTGGAATTTTTAAACCTGGTGATATTGTTGTGGATTGTGGTGCTGCACCAGGATCATGGTGTCAAGTAGCTTCATCTTTAACCAATTGTAATAATAATAATAATAATCTCAAAGCCTCAAATAATCAAAATAAAGGTTTAGTAATTGCTTTTGATTTATTAAACTTTGCACCATTACCTGGTGTTATTACACATTGTGGTGTTGATTTAAATAATTGGTCTGAATGTATAAATTTAATTAATCAATCAATTTCCAGTCATTTTAACAATAATAATAATAACGACGGTAAGCCGTTACAACCCGAGAAACAGAAATCACTTCCAGGTGTTGATGTTGTTCTCAGTGACATAGCTCCAAATGTGGCAGGAATGCGTGAAATCGATATACCAGCTATGATGAAATTAGCGTATAATATTNTACGAGTAGCTATCAGTGTTTCAAAAGAAGGNGCCACTTTTGTGATTAAATTATTCCANNAGTCAGAAGCTGAAGAATNTANNACAACCGNTTCACAATTNTATACGTTAAATTNCGAAGTGTCCTTCATTTTTACGCGTTTATTNAACCNGNAGCTAGTCGGAAAGAATCATCAGAAATCTATTTAGTTGCTAGAGGGTTTCAACTTCTCAAGTAACAGGACAANTAGNCCNTATTNCCATCTTATCCATATTACATTTTACAATGNCATTGAAATAAGAAATACGTTTTATTCTCAGCTTTCTTGNTGATCTACAGAGTAAATCCAGATGTCAT]
[+] EMBL CD081995 [GTTGCATGCACTCATTCTATTGCTTGAATTCAAGGAGTCTTCCATATTGTTTAACGAATCAAGTAGTATCTTGTTTAATCATTAGTATTCGTTCAAATGATGGGAGCTCTCAAAGATGGATTGCACGTCAACGTTCAGATCCTTATGTAAAACGTGCTCATCTTGAAAGTTATAGATGTCGTAGCGCATTCAAATTATTACAATTAAATGATAAAATTTCCGGTGGAATTTTTAAACCTGGTGATATTGTTGTGGATTGTGGTGCTGCACCAGGATCATGGTGTCAAGTAGCTTCATCTTTAACCAATTGTAATAATAATAATAATAATCTCAAAGCCTCAAATAATCAAAATAAAGGTTTAGTAATTGCTTTTGATTTATTAAACTTTGCACCATTACCTGGTGTTATTACACATTGTGGTGTTGATTTAAATAATTGGTCTGAATGTATAAATTTAATTAATCAATCAATTTCCAGTCATTTTAACAATAATAATAATAACGACGGTAAGCCGTTACAACCCGAGAAACAGAAATCACTTCCAGGTGTTGATGTTGTTCTCAGTGACATAGCTCCAAATGTGGCAGGAATGCGTGAAATCGATATACCAGCTATGATGAAATTAGCGTATAATATTNTACGAGTAGCTATCAGTGTTTCAAAAGAAGGNGCCACTTTTGTGATTAAATTATTCCANNAGTCAGAAGCTGAAGAATNTANNACAACCGNTTCACAATTNTATACGTTAAATTNCGAAGTGTCCTTCATTTTTACGCGTTTATTNAACCNGNAGCTAGTCGGAAAGAATCATCAGAAATCTATTTAGTTGCTAGAGGGTTTCAACTTCTCAAGTAACAGGACAANTAGNCCNTATTNCCATCTTATCCATATTACATTTTACAATGNCATTGAAATAAGAAATACGTTTTATTCTCAGCTTTCTTGNTGATCTACAGAGTAAATCCAGATGTCAT]
consensusID : consensus_5990#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[CAAATAATCAAAATAAAGGTTTAGTAATTGCTTTTGATTTATTAAACTTTGCACCATTACCTGGTGTTATTACACATTGTGGTGTTGATTTAAATAATTGGTCTGAATGTATAAATTTAATTAATCAATCAATTTCCAGTCATTTTAACAATAATAATAATAACGACGGTAAGCCGTTACAACCCGAGAAACAGAAATCACTTCCAGGTGTTGATGTTGTTCTCAGTGACATAGCTCCAAATGTGGCAGGAATGCGTGAAATCGATATACCAGCTATGATGAAATTAGCGTATAATATTTTACGAGTAGCTATCAGTGTTTCAAAAGAAGGGGCCACTTTTGTGATTAAATTATTCCAAAGTCAAGAAGCTGAAGAATTTAAACAAACCGTTTCACAATTTTATACGTTAAATTCGAAGTGTCCTTCATTTACGCGTTTTATTAAACCGGAAGCTAGTCGGAAAGAGTCATCAGAAATCTATTTAGTTGCTAGAGGTTTTCAACTTCCTCAAAGTAAACAGGACAATTAAGTCCTTATTTTCCATCATATATCCATATTTACCATTTTAACATTGTACATTTGAAATAAAGTAAATAACCGCTTTTATTTCATACAGCTTTATCATTGGATAGATCTAACAAGAGTGTAAATACCAAGATTAGTCGAATAAAATAA]
[-] EMBL CD075607 [CAAATAATCAAAATAAAGGTTTAGTAATTGCTTTTGATTTATTAAACTTTGCACCATTACCTGGTGTTATTACACATTGTGGTGTTGATTTAAATAATTGGTCTGAATGTATAAATTTAATTAATCAATCAATTTCCAGTCATTTTAACAATAATAATAATAACGACGGTAAGCCGTTACAACCCGAGAAACAGAAATCACTTCCAGGTGTTGATGTTGTTCTCAGTGACATAGCTCCAAATGTGGCAGGAATGCGTGAAATCGATATACCAGCTATGATGAAATTAGCGTATAATATTTTACGAGTAGCTATCAGTGTTTCAAAAGAAGGGGCCACTTTTGTGATTAAATTATTCCAAAGTCAAGAAGCTGAAGAATTTAAACAAACCGTTTCACAATTTTATACGTTAAATTCGAAGTGTCCTTCATTTACGCGTTTTATTAAACCGGAAGCTAGTCGGAAAGAGTCATCAGAAATCTATTTAGTTGCTAGAGGTTTTCAACTTCCTCAAAGTAAACAGGACAATTAAGTCCTTATTTTCCATCATATATCCATATTTACCATTTTAACATTGTACATTTGAAATAAAGTAAATAACCGCTTTTATTTCATACAGCTTTATCATTGGATAGATCTAACAAGAGTGTAAATACCAAGATTAGTCGAATAAAATAA]
consensusID : consensus_5990#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence
[ACTGGCTCAATGTTTTGGCTATGCTGTTTGATTAGTATAAATGGTAAACTGGATTTATATACCACAGGTTACCGAAGAAATATAATTATGACTCTTGAGTCATGTTTTTGGGCAGCATTCGGTGCAATACTACCGGATATTGATCATTTTATAGCTTCAAGAAGTACAAGCATTGAACACTCATTCTATTGCTTGAATTCAAGGAGTCTTCCATATTGTTTAACGAATCAAGTAGTATCTTGTTTAATCATTAGTATTCGTTCAAATGATGGGAGCTCTCAAAGATGGATTGCACGTCAACGTTCAGATCCTTATGTAAAACGTGCTCATCTTGAAAGTTATAGATGTCGTAGCGCATTCAAATTATTACAATTAAATGATAAAATTTNCCGGTGGAATTTTTAAACCTGGTGAGCTNCAGAGATTCT]
[-] EMBL CD128862 [ACTGGCTCAATGTTTTGGCTATGCTGTTTGATTAGTATAAATGGTAAACTGGATTTATATACCACAGGTTACCGAAGAAATATAATTATGACTCTTGAGTCATGTTTTTGGGCAGCATTCGGTGCAATACTACCGGATATTGATCATTTTATAGCTTCAAGAAGTACAAGCATTGAACACTCATTCTATTGCTTGAATTCAAGGAGTCTTCCATATTGTTTAACGAATCAAGTAGTATCTTGTTTAATCATTAGTATTCGTTCAAATGATGGGAGCTCTCAAAGATGGATTGCACGTCAACGTTCAGATCCTTATGTAAAACGTGCTCATCTTGAAAGTTATAGATGTCGTAGCGCATTCAAATTATTACAATTAAATGATAAAATTTNCCGGTGGAATTTTTAAACCTGGTGAGCTNCAGAGATTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5990#0 GTTGCATGCACTCATTCTATTGCTTGAATTCAAGGAGTCTTCCATATTGTTTAACGAATC 60
consensus_5990#1 ------------------------------------------------------------
consensus_5990#2 ------------------------------------------------------------
consensus_5990#0 AAGTAGTATCTTGTTTAATCATTAGTATTCGTTCAAATGATGGGAGCTCTCAAAGATGGA 120
consensus_5990#1 ------------------------------------------------------------
consensus_5990#2 ------------------------------------------------------------
consensus_5990#0 TTGCACGTCAACGTTCAGATCCTTATGTAAAACGTGCTCATCTTGAAAGTTATAGATGTC 180
consensus_5990#1 ------------------------------------------------------------
consensus_5990#2 ------------------------------------------------------------
consensus_5990#0 GTAGCGCATTCAAATTATTACAATTAAATGATAAAATTTCCGGTGGAATTTTTAAACCTG 240
consensus_5990#1 ------------------------------------------------------------
consensus_5990#2 ------------------------------------------------------------
consensus_5990#0 GTGATATTGTTGTGGATTGTGGTGCTGCACCAGGATCATGGTGTCAAGTAGCTTCATCTT 300
consensus_5990#1 ------------------------------------------------------------
consensus_5990#2 ------------------------------------------------------------
consensus_5990#0 TAACCAATTGTAATAATAATAATAATAATCTCAAAGCCTCAAATAATCAAAATAAAGGTT 360
consensus_5990#1 ---------------------------------------CAAATAATCAAAATAAAGGTT 21
consensus_5990#2 ------------------------------------------------------------
consensus_5990#0 TAGTAATTGCTTTTGATTTATTAAACTTTGCACCATTACCTGGTGTTATTACACATTGTG 420
consensus_5990#1 TAGTAATTGCTTTTGATTTATTAAACTTTGCACCATTACCTGGTGTTATTACACATTGTG 81
consensus_5990#2 -----------ACTGGCTCAATGT-TTTGGCTATGCTGTTTGAT--TAGTATAAATGGTA 46
** * * * ** ** * ** * ** ** * ** **
consensus_5990#0 GTGTTGATTTAAATAATTGGTCTGAATGTATAAATTTAATTAATCAATCAATTTCCAGTC 480
consensus_5990#1 GTGTTGATTTAAATAATTGGTCTGAATGTATAAATTTAATTAATCAATCAATTTCCAGTC 141
consensus_5990#2 AACTGGATTTATATACCACAGGTTACCGAAGAAATATAATTA-----TGACTCTTGAGTC 101
* ****** *** * * * * **** ****** * * * * ****
consensus_5990#0 ATTTTAACAATAATAATAATAACGACGGTAAGCCGTTACAACCCGAGAAACAGAAATCAC 540
consensus_5990#1 ATTTTAACAATAATAATAATAACGACGGTAAGCCGTTACAACCCGAGAAACAGAAATCAC 201
consensus_5990#2 ATGTTTTTGG--GCAGCATT-----CGGTG---CAATACTACC----GGATATTGATCAT 147
** ** * * * **** * *** *** * * ****
consensus_5990#0 TTCCAGGTGTTGATGT-TGTTCTCAGTGACATAGCTCCAAATGTGGCAGGAATGCGTGAA 599
consensus_5990#1 TTCCAGGTGTTGATGT-TGTTCTCAGTGACATAGCTCCAAATGTGGCAGGAATGCGTGAA 260
consensus_5990#2 TTTATAGCTTCAAGAAGTACAAGCATTGA-ACA-CTCATTCTATTGCTTGAATTCAAGGA 205
** * * * * ** *** * * *** * * ** **** * * *
consensus_5990#0 ATCGATATACCAGCTATGATGAAATTAGCGTATAATATTNTACG-AGTAGCTATCAGTGT 658
consensus_5990#1 ATCGATATACCAGCTATGATGAAATTAGCGTATAATATTTTACG-AGTAGCTATCAGTGT 319
consensus_5990#2 GTC----TTCCATAT-TGTTTAACGAATCAAGTAGTATCTTGTTTAATCATTAGTATTCG 260
** * *** * ** * ** * * ** *** * * * ** * *
consensus_5990#0 TTCAAAAGAAGGNGCCACTTTTGTGATTAAATTATTCCANNAGTCAGAAGCTGAAGAATN 718
consensus_5990#1 TTCAAAAGAAGGGGCCACTTTTGTGATTAAATTATTCCAAAGTCAAGAAGCTGAAGAATT 379
consensus_5990#2 TTCAAATGATGGGA--GCTCTCAAAGATGGATTGC----ACGTCAA--CGTTCAGATCCT 312
****** ** ** ** * * *** * * * *
consensus_5990#0 TANNACAACCGNTTCACAATTNTATACGTTAAATTNCGAAGTGTCCTTCATTTTTACGCG 778
consensus_5990#1 TAAACAAACCGTTTCACAATTTTATACGTTAAATTC-GAAGTGTCCTTCATTTACGCGT- 437
consensus_5990#2 TATGTAAAACGTGCTCATCTTGAAAGTTATAGATGTCGTAGCGCATTCAAATTA----TT 368
** ** ** ** * ** ** * ** * * * **
consensus_5990#0 TTTATTNAACCNGNAGCTAGTCGGAAAGAATCATCAGAAATCTATTTAGTTGCTAGAGGG 838
consensus_5990#1 TTTATTAAACCGGAAGCTAGTCGGAAAGAGTCATCAGAAATCTATTTAGTTGCTAGAGGT 497
consensus_5990#2 ACAATTAAATGATAAAATTTNCCGGTGGAATTTTT--AAACCTGGTGAGCTNC-AGAGAT 425
*** ** * * * * ** * * *** ** * ** * * ****
consensus_5990#0 TTTCAACTTCTC--AAGTAA-CAGGACAANTA-GNCCNTATTN-CCATCTTAT--CCATA 891
consensus_5990#1 TTTCAACTTCCTCAAAGTAAACAGGACAATTAAGTCCTTATTTTCCATCATATATCCATA 557
consensus_5990#2 TCT--------------------------------------------------------- 428
* *
consensus_5990#0 TT----------ACATTTTACAATGNCATTGAAATAAGAAATACGTTTTATTCT---CAG 938
consensus_5990#1 TTTACCATTTTAACATTGTACATTTGAAATAAAGTAAATAACCGCTTTTATTTCATACAG 617
consensus_5990#2 ------------------------------------------------------------
consensus_5990#0 CTTTCTTGNTG-----ATCTAC----AGAGTAAATCCAGATGTCAT------------- 975
consensus_5990#1 CTTTATCATTGGATAGATCTAACAAGAGTGTAAATACCAAGATTAGTCGAATAAAATAA 676
consensus_5990#2 -----------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||