These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 843 fasta sequence [CATNAATTCGGCACGAGGGGGAACTTTAACAGCAAAAAGTATTTTGGACTTAACCAATATATGTCAAGTCTTGATGCCCCAGCAGATTTGTTTAAAAAATTGGTTAATGTTCTAACCACTTGGCTAAAGACATTAGATGAATTTACTAAGAAAGAAGAGGAGTTTGCTAATACTTCACGAAATTTTAGTGTCGACCCCAAATACTGGGCTACAACAAGTGAATTAGCGTACTCAGTAGGGAATATATGCGAATGTTATAAAAATACAAACCAACAATCACTCCTGGAACCTTTGAAAAAAATTTGTGGCATACTACCCTCTATAAACGACATTTTTGTCGAGAGGGAAGAAATTCTGAAAGAAATCAACCGAAAATGTCGAAAAATCAGAAAAGCAGAACTCCCAGAGCATGGAAATGAAATCTCAGGAAGGCATAAAAAGATTTCACAATCAGTCGATTCATTAACAAGTCGTTTACATGCTATTGAATACATAATAAACGTCAATTTGGTAGATCTCACTTCAACGTTAGAAGTATTTTTATCGTCGTCGTTCCATGCTCATCTCGATTGTACTTACGAATTTTTTCAAAAAGCATCGATAGTCAATCAACAAATGTCGGATTTATTGAATACCGGTCAAAATGAACTCAGTCTGTTAGATAAAAAAATGGACGAGGATATGGACTCCATATACAAGCTCTTACATCTGAAACCTGAAAAATAATAGGCTCTTGATTTGTTGATATTTTATTGGTTCATCTTCATATTGTTCAGTCCTATTTTCCTCAGAATTTTATTGGTATAGTGCAAATTAATTTTTCTTTATTGAANTAC-ATTATTT] [+] EMBL CD081602 [CATNAATTCGGCACGAGGGGGAACTTTAACAGCAAAAAGTATTTTGGACTTAACCAATATATGTCAAGTCTTGATGCCCCAGCAGATTTGTTTAAAAAATTGGTTAATGTTCTAACCACTTGGCTAAAGACATTAGATGAATTTACTAAGAAAGAAGAGGAGTTTGCTAATACTTCACGAAATTTTAGTGTCGACCCCAAATACTGGGCTACAACAAGTGAATTAGCGTACTCAGTAGGGAATATATGCGAATGTTATAAAAATACAAACCAACAATCACTCCTGGAACCTTTGAAAAAAATTTGTGGCATACTACCCTCTATAAACGACATTTTTGTCGAGAGGGAAGAAATTCTGAAAGAAATCAACCGAAAATGTCGAAAAATCAGAAAAGCAGAACTCCCAGAGCATGGAAATGAAATCTCAGGAAGGCATAAAAAGATTTCACAATCAGTCGATTCATTAACAAGTCGTTTACATGCTATTGAATACATAATAAACGTCAATTTGGTAGATCTCACTTCAACGTTAGAAGTATTTTTATCGTCGTCGTTCCATGCTCATCTCGATTGTACTTACGAATTTTTTCAAAAAGCATCGATAGTCAATCAACAAATGTCGGATTTATTGAATACCGGTCAAAATGAACTCAGTCTGTTAGATAAAAAAATGGACGAGGATATGGACTCCATATACAAGCTCTTACATCTGAAACCTGAAAAATAATAGGCTCTTGATTTGTTGATATTTTATTGGTTCATCTTCATATTGTTCAGTCCTATTTTCCTCAGAATTTTATTGGTATAGTGCAAATTAATTTTTCTTTATTGAANTAC ATTATT ] [-] EMBL CD075425 [ CCAACAATCACTCCTGGAACCTTTGAAAAAAATTTGTGGCATACTACCCTCTATAAACGACATTTTTGTCGAGAGGGAAGAAATTCTGAAAGAAATCAACCGAAAATGTCGAAAAATCAGAAAAGCAGAACTCCCAGAGCATGGAAATGAAATCTCAGGAAGGCATAAAAAGATTTCACAATCAGTCGATTCATTAACAAGTCGTTTACATGCTATTGAATACATAATAAACGTCAATTTGGTAGATCTCACTTCAACGTTAGAAGTATTTTTATCGTCGTCGTTCCATGCTCATCTCGATTGTACTTACGAATTTTTTCAAAAAGCATCGATAGTCAATCAACAAATGTCGGATTTATTGAATACCGGTCAAAATGAACTCAGTCTGTTAGATAAAAAAATGGACGAGGATATGGACTCCATATACAAGCTCTTACATTTGAAACCTGAAAAATAATAGGCTCTTGATTTGTTGATATTTTATTGGTTCATCTTCATATTGTTCAGTCCTATTTTCCTCAGAATTTTATTGGTATAGTGCAATTTAATTTTTCTTTATTGAA TACAATTATTT] consensusID : consensus_5993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [GTGGCATACTACCCTCTATAAACGACATTTTTGTCGAGAGGGAAGAAATTCTGAAAGAAATCAACCGAAAATGTCGAAAAATCAGAAAAGCAGAACTCCCAGAGCATGGAAATGAAATCTCAGGAAGGCATAAAAAGATTTCACAATCAGTCGATTCATTAACAAGTCGTTTACATGCTATTGAATACATAATAAACGTCAATTTGGTAGATCTCACTTCAACGTTAGAAGTATTTTTATCGTCGTCGTTCCATGAAAGAACATGTTAGAATGTTATGTTTAGTGAAACAATGACTAAATTCATATTTATGTGCCCGGCCACGTATTTTATCT] [-] EMBL CD065531 [GTGGCATACTACCCTCTATAAACGACATTTTTGTCGAGAGGGAAGAAATTCTGAAAGAAATCAACCGAAAATGTCGAAAAATCAGAAAAGCAGAACTCCCAGAGCATGGAAATGAAATCTCAGGAAGGCATAAAAAGATTTCACAATCAGTCGATTCATTAACAAGTCGTTTACATGCTATTGAATACATAATAAACGTCAATTTGGTAGATCTCACTTCAACGTTAGAAGTATTTTTATCGTCGTCGTTCCATGAAAGAACATGTTAGAATGTTATGTTTAGTGAAACAATGACTAAATTCATATTTATGTGCCCGGCCACGTATTTTATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5993#0 CATNAATTCGGCACGAGGGGGAACTTTAACAGCAAAAAGTATTTTGGACTTAACCAATAT 60 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 ATGTCAAGTCTTGATGCCCCAGCAGATTTGTTTAAAAAATTGGTTAATGTTCTAACCACT 120 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 TGGCTAAAGACATTAGATGAATTTACTAAGAAAGAAGAGGAGTTTGCTAATACTTCACGA 180 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 AATTTTAGTGTCGACCCCAAATACTGGGCTACAACAAGTGAATTAGCGTACTCAGTAGGG 240 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 AATATATGCGAATGTTATAAAAATACAAACCAACAATCACTCCTGGAACCTTTGAAAAAA 300 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 ATTTGTGGCATACTACCCTCTATAAACGACATTTTTGTCGAGAGGGAAGAAATTCTGAAA 360 consensus_5993#1 ----GTGGCATACTACCCTCTATAAACGACATTTTTGTCGAGAGGGAAGAAATTCTGAAA 56 ******************************************************** consensus_5993#0 GAAATCAACCGAAAATGTCGAAAAATCAGAAAAGCAGAACTCCCAGAGCATGGAAATGAA 420 consensus_5993#1 GAAATCAACCGAAAATGTCGAAAAATCAGAAAAGCAGAACTCCCAGAGCATGGAAATGAA 116 ************************************************************ consensus_5993#0 ATCTCAGGAAGGCATAAAAAGATTTCACAATCAGTCGATTCATTAACAAGTCGTTTACAT 480 consensus_5993#1 ATCTCAGGAAGGCATAAAAAGATTTCACAATCAGTCGATTCATTAACAAGTCGTTTACAT 176 ************************************************************ consensus_5993#0 GCTATTGAATACATAATAAACGTCAATTTGGTAGATCTCACTTCAACGTTAGAAGTATTT 540 consensus_5993#1 GCTATTGAATACATAATAAACGTCAATTTGGTAGATCTCACTTCAACGTTAGAAGTATTT 236 ************************************************************ consensus_5993#0 TTATCGTCGTCGTTCCATGCTCATCTCGATTGTACTTACGAATTTTTTCAAAAAGCATCG 600 consensus_5993#1 TTATCGTCGTCGTTCCATGA-------AAGAACATGTTAGAATGTT------ATGTTTAG 283 ******************* * * * **** ** * * * * consensus_5993#0 ATAGTCAATCAACAAATGTCGGATTTATTGAATACCGGTCAAAATGAACTCAGTCTGTTA 660 consensus_5993#1 TGAAACAATGACTAAAT-TCATATTTATGTGC--CCGGCCA---CGTATTTTATCT---- 333 * **** * **** ** ****** **** ** * * * *** consensus_5993#0 GATAAAAAAATGGACGAGGATATGGACTCCATATACAAGCTCTTACATCTGAAACCTGAA 720 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 AAATAATAGGCTCTTGATTTGTTGATATTTTATTGGTTCATCTTCATATTGTTCAGTCCT 780 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 ATTTTCCTCAGAATTTTATTGGTATAGTGCAAATTAATTTTTCTTTATTGAANTACATTA 840 consensus_5993#1 ------------------------------------------------------------ consensus_5993#0 TTT 843 consensus_5993#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||