cluster # 5994

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Schistosoma mansoni
cluster # 5994 cluster # 5994 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5994#0 length = 789 sequences # 2

consensus_5994#1 length = 362 sequences # 1

consensusID : consensus_5994#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 789
fasta sequence

                              [TCGCACGAGGTGATATTCGAAAAGAACTGAATAATCGTTATCGAGACTATCGAGAAGCATATCAATCTGCTAATCCAGAAAGTATTTTCAGTATGGTCACACATGAAACACCTGAAACTTTACATGTCGGTCGTTTAGTTGAATGTCGTGTGTTATCTGTTGCTACTAGACGACCACGACCTGAACAATTAGACAATGCAAATCCAACAAAAAATGAAATTAACGGTTTATGGATGTGCCCATTTTGTCAACAAGATAACTTCACAACTACTCAATCACGTTTGGAGTCATATTGATAATAATGAATGTCCTGGACAACCAGTTGGATTAAGAGTTCAATTAGACAATGGAATTGATGGATTTATACCATTAAAGTTTATGGATTCTCCAGATAAATTATTTGAACGAACTCAACCGGGTTCTCTTGTACAATGTCGAGTAACTAAAATCGACATAACAAGATTTAATGTGGAGCTCACTTGCAAGTCAGCGGAATTAAAGGATGAACGTCATATATGGCGTCCACGTCAAGATGCTTTTTATGATTTTGAAAAAGAAGAAAAAGATCTACGCTCTGAAGCAGAAGCGATGGCTAAAGCTAAGGCTAAAACTAATCCATACATGTCTCGTTTGATATTTCATCCGTATTTTAAAAATATTAGCTATGATCATTTGGCTGCAATGGAGCCGGAATTAGAGCCTGGTGCAATTATTATTCGTCCAAGTAGAAAGGGAACGGATCATCTGACTGNTAGCTGGAAGATAGATGACGGAATTTATGCACATATT]

[+] EMBL CD083374             [TCGCACGAGGTGATATTCGAAAAGAACTGAATAATCGTTATCGAGACTATCGAGAAGCATATCAATCTGCTAATCCAGAAAGTATTTTCAGTATGGTCACACATGAAACACCTGAAACTTTACATGTCGGTCGTTTAGTTGAATGTCGTGTGTTATCTGTTGCTACTAGACGACCACGACCTGAACAATTAGACAATGCAAATCCAACAAAAAATGAAATTAACGGTTTATGGATGTGCCCATTTTGTCAACAAGATAACTTCACAACTACTCAATCACGTTTGGAGTCATATTGATAATAATGAATGTCCTGGACAACCAGTTGGATTAAGAGTTCAATTAGACAATGGAATTGATGGATTTATACCATTAAAGTTTATGGATTCTCCAGATAAATTATTTGAACGAACTCAACCGGGTTCTCTTGTACAATGTCGAGTAACTAAAATCGACATAACAAGATTTAATGTGGAGCTCACTTGCAAGTCAGCGGAATTAAAGGATGAACGTC                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD083011             [                                                                                                                                                                                                   agggAAATCCAACAAAAAATGAAATTAACGGTTTATGGATGTGCCCATTTTGTCAACAAGATAACTTC CAACTACTCAATCACGTTTGGAGTCATTTTGATAATAATGAATGTCCTGGACAACCAGTTGGATTAAGAGTTCAATTAGACAATGGAATTGATGGATTTATACCATTAAAGTTTATGGATTCTCCAGATAAATTATTTGAACGAACTCAACCGGGTTCTCTTGTACAATGTCGAGTAACTAAAATCGACATAACAAGATTTAATGTGGAGCTCACTTGCAAGTCAGCGGAATTAAAGGATGAACGTCATATATGGCGTCCACGTCAAGATGCTTTTTATGATTTTGAAAAAGAAGAAAAAGATCTACGCTCTGAAGCAGAAGCGATGGCTAAAGCTAAGGCTAAAACTAATCCATACATGTCTCGTTTGATATTTCATCCGTATTTTAAAAATATTAGCTATGATCATTTGGCTGCAATGGAGCCGGAATTAGAGCCTGGTGCAATTATTATTCGTCCAAGTAGAAAGGGAACGGATCATCTGACTGNTAGCTGGAAGATAGATGACGGAATTTATGCACATATT]




>consensus_5994#0
TCGCACGAGGTGATATTCGAAAAGAACTGAATAATCGTTATCGAGACTATCGAGAAGCAT
ATCAATCTGCTAATCCAGAAAGTATTTTCAGTATGGTCACACATGAAACACCTGAAACTT
TACATGTCGGTCGTTTAGTTGAATGTCGTGTGTTATCTGTTGCTACTAGACGACCACGAC
CTGAACAATTAGACAATGCAAATCCAACAAAAAATGAAATTAACGGTTTATGGATGTGCC
CATTTTGTCAACAAGATAACTTCACAACTACTCAATCACGTTTGGAGTCATATTGATAAT
AATGAATGTCCTGGACAACCAGTTGGATTAAGAGTTCAATTAGACAATGGAATTGATGGA
TTTATACCATTAAAGTTTATGGATTCTCCAGATAAATTATTTGAACGAACTCAACCGGGT
TCTCTTGTACAATGTCGAGTAACTAAAATCGACATAACAAGATTTAATGTGGAGCTCACT
TGCAAGTCAGCGGAATTAAAGGATGAACGTCATATATGGCGTCCACGTCAAGATGCTTTT
TATGATTTTGAAAAAGAAGAAAAAGATCTACGCTCTGAAGCAGAAGCGATGGCTAAAGCT
AAGGCTAAAACTAATCCATACATGTCTCGTTTGATATTTCATCCGTATTTTAAAAATATT
AGCTATGATCATTTGGCTGCAATGGAGCCGGAATTAGAGCCTGGTGCAATTATTATTCGT
CCAAGTAGAAAGGGAACGGATCATCTGACTGNTAGCTGGAAGATAGATGACGGAATTTAT
GCACATATT

consensusID : consensus_5994#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [AAAAAAAAGTTTTCGGTTTTGAAGCAAAAACGATGGGCTAAAGTAAGGGTAAAAATTATCCATACATGTCTCGTTTGATATTTCATCCGTATTTTAAAAATATTAGCCATGATCATTTGGCTGCAATGGAGCCGGAATTAGAGGCTGGGGGCATTATTATTTGTCCCAGTAAGAAGGGAACGGATTATCTGACTTGTAGCTGGAAGATAGATTACGGAATTATGCAGCATATTGATGTTTCCGAAAAAGAAAAATCAAATAGTTTTTCACTGGGAAAACTGTTAATTATTGGCGATGCAGAATTTGAAGACTTGGATGAAATTGTGGCACGTCATGTGCAACCAATGGCTTCTCTTGTTCGT]

[-] EMBL CD167178             [AAAAAAAAGTTTTCGGTTTTGAAGCAAAAACGATGGGCTAAAGTAAGGGTAAAAATTATCCATACATGTCTCGTTTGATATTTCATCCGTATTTTAAAAATATTAGCCATGATCATTTGGCTGCAATGGAGCCGGAATTAGAGGCTGGGGGCATTATTATTTGTCCCAGTAAGAAGGGAACGGATTATCTGACTTGTAGCTGGAAGATAGATTACGGAATTATGCAGCATATTGATGTTTCCGAAAAAGAAAAATCAAATAGTTTTTCACTGGGAAAACTGTTAATTATTGGCGATGCAGAATTTGAAGACTTGGATGAAATTGTGGCACGTCATGTGCAACCAATGGCTTCTCTTGTTCGT]




>consensus_5994#1
AAAAAAAAGTTTTCGGTTTTGAAGCAAAAACGATGGGCTAAAGTAAGGGTAAAAATTATC
CATACATGTCTCGTTTGATATTTCATCCGTATTTTAAAAATATTAGCCATGATCATTTGG
CTGCAATGGAGCCGGAATTAGAGGCTGGGGGCATTATTATTTGTCCCAGTAAGAAGGGAA
CGGATTATCTGACTTGTAGCTGGAAGATAGATTACGGAATTATGCAGCATATTGATGTTT
CCGAAAAAGAAAAATCAAATAGTTTTTCACTGGGAAAACTGTTAATTATTGGCGATGCAG
AATTTGAAGACTTGGATGAAATTGTGGCACGTCATGTGCAACCAATGGCTTCTCTTGTTC
GT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5994#0      TCGCACGAGGTGATATTCGAAAAGAACTGAATAATCGTTATCGAGACTATCGAGAAGCAT 60
consensus_5994#1      ------------------------------------------------------------
                                                                                  

consensus_5994#0      ATCAATCTGCTAATCCAGAAAGTATTTTCAGTATGGTCACACATGAAACACCTGAAACTT 120
consensus_5994#1      ------------------------------------------------------------
                                                                                  

consensus_5994#0      TACATGTCGGTCGTTTAGTTGAATGTCGTGTGTTATCTGTTGCTACTAGACGACCACGAC 180
consensus_5994#1      ------------------------------------------------------------
                                                                                  

consensus_5994#0      CTGAACAATTAGACAATGCAAATCCAACAAAAAATGAAATTAACGGTTTATGGATGTGCC 240
consensus_5994#1      ------------------------------------------------------------
                                                                                  

consensus_5994#0      CATTTTGTCAACAAGATAACTTCACAACTACTCAATCACGTTTGGAGTCATATTGATAAT 300
consensus_5994#1      ------------------------------------------------------------
                                                                                  

consensus_5994#0      AATGAATGTCCTGGACAACCAGTTGGATTAAGAGTTCAATTAGACAATGGAATTGATGGA 360
consensus_5994#1      ------------------------------------------------------------
                                                                                  

consensus_5994#0      TTTATACCATTAAAGTTTATGGATTCTCCAGATAAATTATTTGAACGAACTCAACCGGGT 420
consensus_5994#1      ------------------------------------------------------------
                                                                                  

consensus_5994#0      TCTCTTGTACAATGTCGAGTAACTAAAATCGACATAACAAGATTTAATGTGGAGCTCACT 480
consensus_5994#1      ------------------------------------------------------------
                                                                                  

consensus_5994#0      TGCAAGTCAGCGGAATTAAAGGATGAACGTCATATATGGCGTCCACGTCAAGATGCTTTT 540
consensus_5994#1      ------------------------------------------------------------
                                                                                  

consensus_5994#0      TATGATTTTGAAAAAGAAGAAAAAGATCTACGCTCTGAAGCAGAAGCGATGGCTAAAGCT 600
consensus_5994#1      ----------------AAAAAAAAGTTTTCGGTTTTGAAGCAAAAACGATGGGCTAAAGT 44
                                      ** ****** * *  * * ******* ** ******   **  *

consensus_5994#0      AAGGCTAAAACTAATCCATACATGTCTCGTTTGATATTTCATCCGTATTTTAAAAATATT 660
consensus_5994#1      AAGGGTAAAAATTATCCATACATGTCTCGTTTGATATTTCATCCGTATTTTAAAAATATT 104
                      **** ***** * ***********************************************

consensus_5994#0      AGCTATGATCATTTGGCTGCAATGGAGCCGGAATTAGAGCCTGGTGCAATTATTATTCGT 720
consensus_5994#1      AGCCATGATCATTTGGCTGCAATGGAGCCGGAATTAGAGGCTGGGGGCATTATTATTTGT 164
                      *** *********************************** **** *  ********* **

consensus_5994#0      CCAAGTAGAAAGGGAACGGATCATCTGACTGNTAGCTGGAAGATAGATGACGGAATTTAT 780
consensus_5994#1      CCCAGTAAGAAGGGAACGGATTATCTGACTTGTAGCTGGAAGATAGATTACGGAATT-AT 223
                      ** ****  ************ ********  **************** ******** **

consensus_5994#0      GCA-CATATT-------------------------------------------------- 789
consensus_5994#1      GCAGCATATTGATGTTTCCGAAAAAGAAAAATCAAATAGTTTTTCACTGGGAAAACTGTT 283
                      *** ******                                                  

consensus_5994#0      ------------------------------------------------------------
consensus_5994#1      AATTATTGGCGATGCAGAATTTGAAGACTTGGATGAAATTGTGGCACGTCATGTGCAACC 343
                                                                                  

consensus_5994#0      -------------------
consensus_5994#1      AATGGCTTCTCTTGTTCGT 362