cluster # 5995

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Schistosoma mansoni
cluster # 5995 cluster # 5995 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5995#0 length = 803 sequences # 2

consensus_5995#1 length = 329 sequences # 1

consensusID : consensus_5995#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 803
fasta sequence

                              [AACCATATTTCGTGATGGGATGTTTACTAAGTATTGACGAGAAGGAAGCTGTTCAAAGATCTAAACAGATTGACGCCTCGCTCAAAAGCGATGGTGAAAAAATGGCGAGAATAGCTAAGCTTTTGTTGCTTGGTGCTGGTGAGTCTGGGAAAAGCACAATACTTAAGCAGCTAAAAATTATTCACCAGTCTAGCTATACAAGAGAGGAATGCCTACTTTATAAACCTGTTGTTTATAGCAACACTGTTCAGAGTATGATAGCGATTATACGAG-CTATGGGTCAC-TTGTACATTAAATTTGAGGATGAGTGTAGAATGGATGATGCTCGAACTTTATTTGCGTGTGCGAATGAGGCTGCGGATGGTTACTTATCCACTGAATTATACAGTGCTCTTTATCAACTCTGGAATGATGGTGGCGTTCAACAGTGTTTCAAGCGTTCAAGAGAATATCAATTAAATGACTCAGCATCTTATTTTTTCAATTCTTTAGATAGATTGGCTAAACATGATTACATTCCGACCGACCAAGACGTATTGAGAACACGTGTAAAGACTACGGGTATACAAGAAACTCAGTTTTCTTAC-AAAAGATTGAATTTCNGTTAGTAGATGTCGGTGGACAAAGATCAGAGAGAAAAAAATGGATTCATTGTTTCCAAGATGTAACTGCAATCATATTTGTGGTTGCATTAAGTGAGTATGATCTTGGTCTAGCTGAAGACCAAACAACGAATCGAATGGTTGAATCTATGAATTTATTTGATTCCATATGTAATAATAGTTGGTTTACTGAAACCAGTA]

[+] EMBL CD201499             [AACCATATTTCGTGATGGGATGTTTACTAAGTATTGACGAGAAGGAAGCTGTTCAAAGATCTAAACAGATTGACGCCTCGCTCAAAAGCGATGGTGAAAAAATGGCGAGAATAGCTAAGCTTTTGTTGCTTGGTGCTGGTGAGTCTGGGAAAAGCACAATACTTAAGCAGCTAAAAATTATTCACCAGTCTAGCTATACAAGAGAGGAATGCCTACTTTATAAACCTGTTGTTTATAGCAACACTGTTCAGAGTATGATAGCGATTATACGAG CTATGGGTCAC TTGTACATTAAATTTGAGGATGAGTGTAGAATGGATGATGCTCGAACTTTATTTGCGTGTGCGAATGAGGCTGCGGATGGTTACTTATCCACTGAATTATACAGTGCTCTTTATCAACTCTGGAATGATGGTGGCGTTCAACAGTGTTTCAAGCGTTCAAGAGAATATCAATTAAATGACTCAGCATCTTATTTTTTCAATTCTTTAGATAGATTGGCTAAACATGATTACATTCCGACCGACCAAGACGTATTGAGAACACGTGTAAAGACTACGGGTATACAAGAAACTCAGTTTTCTTAC AAAAGATTGAATTTCNGTTAGTAGATGTCGG                                                                                                                                                                                         ]
[+] EMBL CD083009             [                                                                                                                                                                                                                                                                       atatTACGAGCCTATGGGTCACNTTGTACATTAAATTTGAGGATGAGTGTAGAATGGATGATGCTCGAACTTTATTTGCGTGTGCGAATGAGGCTGCGGATGGTTACTTATCCACTGAATTATACAGTGCTCTTCATCAACTCTGGAATGATGGTGGCGTTCAACAGTGTTTCAAGCGTTCAAGAGAATATCAATTAAATGACTCAGCATCTTATTTTTTCAATTCTTTAGATAGATTGGCTAAACATGATTACATTCCGACCGACCAAGACGTATTGAGAACACGTGTAAAGACTACGGGTATACAAGAAACTCAGTTTTCTTACAAAAAGATTGAATTTCGGTTAGTAGATGTCGGTGGACAAAGATCAGAGAGAAAAAAATGGATTCATTGTTTCCAAGATGTAACTGCAATCATATTTGTGGTTGCATTAAGTGAGTATGATCTTGGTCTAGCTGAAGACCAAACAACGAATCGAATGGTTGAATCTATGAATTTATTTGATTCCATATGTAATAATAGTTGGTTTACTGAAACCAGTA]




>consensus_5995#0
AACCATATTTCGTGATGGGATGTTTACTAAGTATTGACGAGAAGGAAGCTGTTCAAAGAT
CTAAACAGATTGACGCCTCGCTCAAAAGCGATGGTGAAAAAATGGCGAGAATAGCTAAGC
TTTTGTTGCTTGGTGCTGGTGAGTCTGGGAAAAGCACAATACTTAAGCAGCTAAAAATTA
TTCACCAGTCTAGCTATACAAGAGAGGAATGCCTACTTTATAAACCTGTTGTTTATAGCA
ACACTGTTCAGAGTATGATAGCGATTATACGAGCTATGGGTCACTTGTACATTAAATTTG
AGGATGAGTGTAGAATGGATGATGCTCGAACTTTATTTGCGTGTGCGAATGAGGCTGCGG
ATGGTTACTTATCCACTGAATTATACAGTGCTCTTTATCAACTCTGGAATGATGGTGGCG
TTCAACAGTGTTTCAAGCGTTCAAGAGAATATCAATTAAATGACTCAGCATCTTATTTTT
TCAATTCTTTAGATAGATTGGCTAAACATGATTACATTCCGACCGACCAAGACGTATTGA
GAACACGTGTAAAGACTACGGGTATACAAGAAACTCAGTTTTCTTACAAAAGATTGAATT
TCNGTTAGTAGATGTCGGTGGACAAAGATCAGAGAGAAAAAAATGGATTCATTGTTTCCA
AGATGTAACTGCAATCATATTTGTGGTTGCATTAAGTGAGTATGATCTTGGTCTAGCTGA
AGACCAAACAACGAATCGAATGGTTGAATCTATGAATTTATTTGATTCCATATGTAATAA
TAGTTGGTTTACTGAAACCAGTA

consensusID : consensus_5995#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence

                              [ATGGATGCGGGGTCTGGGAAAAGCACAATACTTAAGCAGCTAAACAACACTGTTCAGAGTATGATAGCGATTATACGAGCTATGGGTCACTTGTACATTAAATTTGAGGATGAGTGTAGAATGGATGATGCTCGAACTTTATTTGCGTGTGCGAATGAGGCTGCGGATGGTTACTTATCCACTGAATTACACAGTGCTCTTTATCAACTCTGGAATGATGGTGGCGTTCAACAGTGTTTCAAGCGTTCAAGAGAATATCAATTAAATGACTCAGCATCTTATTTTTTCAATTCTTTAGATAGATTGGCTAAACATGATTACATTCCGAC]

[-] EMBL BG930357             [ATGGATGCGGGGTCTGGGAAAAGCACAATACTTAAGCAGCTAAACAACACTGTTCAGAGTATGATAGCGATTATACGAGCTATGGGTCACTTGTACATTAAATTTGAGGATGAGTGTAGAATGGATGATGCTCGAACTTTATTTGCGTGTGCGAATGAGGCTGCGGATGGTTACTTATCCACTGAATTACACAGTGCTCTTTATCAACTCTGGAATGATGGTGGCGTTCAACAGTGTTTCAAGCGTTCAAGAGAATATCAATTAAATGACTCAGCATCTTATTTTTTCAATTCTTTAGATAGATTGGCTAAACATGATTACATTCCGAC]




>consensus_5995#1
ATGGATGCGGGGTCTGGGAAAAGCACAATACTTAAGCAGCTAAACAACACTGTTCAGAGT
ATGATAGCGATTATACGAGCTATGGGTCACTTGTACATTAAATTTGAGGATGAGTGTAGA
ATGGATGATGCTCGAACTTTATTTGCGTGTGCGAATGAGGCTGCGGATGGTTACTTATCC
ACTGAATTACACAGTGCTCTTTATCAACTCTGGAATGATGGTGGCGTTCAACAGTGTTTC
AAGCGTTCAAGAGAATATCAATTAAATGACTCAGCATCTTATTTTTTCAATTCTTTAGAT
AGATTGGCTAAACATGATTACATTCCGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5995#0      AACCATATTTCGTGATGGGATGTTTACTAAGTATTGACGAGAAGGAAGCTGTTCAAAGAT 60
consensus_5995#1      ------------------------------------------------------------
                                                                                  

consensus_5995#0      CTAAACAGATTGACGCCTCGCTCAAAAGCGATGGTGAAAAAATGGCGAGAATAGCTAAGC 120
consensus_5995#1      ------------------------------------------------------------
                                                                                  

consensus_5995#0      TTTTGTTGCTTGGTGCTGGTGAGTCTGGGAAAAGCACAATACTTAAGCAGCTAAAAATTA 180
consensus_5995#1      ------------------------------------------------------------
                                                                                  

consensus_5995#0      TTCACCAGTCTAGCTATACAAGAGAGGAATGCCTACTTTATAAACCTGTTGTTTATAG-C 239
consensus_5995#1      ---------------ATGGATGCGGGGTCTGGGAAAAGCACAATACTTAAGCAGCTAAAC 45
                                     **  * * * **  **   *    * **  **   *    **  *

consensus_5995#0      AACACTGTTCAGAGTATGATAGCGATTATACGAGCTATGGGTCACTTGTACATTAAATTT 299
consensus_5995#1      AACACTGTTCAGAGTATGATAGCGATTATACGAGCTATGGGTCACTTGTACATTAAATTT 105
                      ************************************************************

consensus_5995#0      GAGGATGAGTGTAGAATGGATGATGCTCGAACTTTATTTGCGTGTGCGAATGAGGCTGCG 359
consensus_5995#1      GAGGATGAGTGTAGAATGGATGATGCTCGAACTTTATTTGCGTGTGCGAATGAGGCTGCG 165
                      ************************************************************

consensus_5995#0      GATGGTTACTTATCCACTGAATTATACAGTGCTCTTTATCAACTCTGGAATGATGGTGGC 419
consensus_5995#1      GATGGTTACTTATCCACTGAATTACACAGTGCTCTTTATCAACTCTGGAATGATGGTGGC 225
                      ************************ ***********************************

consensus_5995#0      GTTCAACAGTGTTTCAAGCGTTCAAGAGAATATCAATTAAATGACTCAGCATCTTATTTT 479
consensus_5995#1      GTTCAACAGTGTTTCAAGCGTTCAAGAGAATATCAATTAAATGACTCAGCATCTTATTTT 285
                      ************************************************************

consensus_5995#0      TTCAATTCTTTAGATAGATTGGCTAAACATGATTACATTCCGACCGACCAAGACGTATTG 539
consensus_5995#1      TTCAATTCTTTAGATAGATTGGCTAAACATGATTACATTCCGAC---------------- 329
                      ********************************************                

consensus_5995#0      AGAACACGTGTAAAGACTACGGGTATACAAGAAACTCAGTTTTCTTACAAAAGATTGAAT 599
consensus_5995#1      ------------------------------------------------------------
                                                                                  

consensus_5995#0      TTCNGTTAGTAGATGTCGGTGGACAAAGATCAGAGAGAAAAAAATGGATTCATTGTTTCC 659
consensus_5995#1      ------------------------------------------------------------
                                                                                  

consensus_5995#0      AAGATGTAACTGCAATCATATTTGTGGTTGCATTAAGTGAGTATGATCTTGGTCTAGCTG 719
consensus_5995#1      ------------------------------------------------------------
                                                                                  

consensus_5995#0      AAGACCAAACAACGAATCGAATGGTTGAATCTATGAATTTATTTGATTCCATATGTAATA 779
consensus_5995#1      ------------------------------------------------------------
                                                                                  

consensus_5995#0      ATAGTTGGTTTACTGAAACCAGTA 803
consensus_5995#1      ------------------------