cluster # 5999

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5999 cluster # 5999 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5999#0 length = 534 sequences # 1

consensus_5999#1 length = 520 sequences # 1
consensus_5999#2 length = 331 sequences # 1

consensusID : consensus_5999#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence

                              [ATACAAAAATTGTTTACATAACAACAAAATTATCCCCCACTTGAAATAAATCAATTAAGGGAGACGTTTAAATTTAACAATAAAAGTTGGTCCATAATTACATGATATTGATGGGATAATTAATAAACCATGACATGTGTTATTCGAAGATAGATTTGTATCATGGTTCTCTTTACTCATATTATTATTATTATTATCAAATAAAGGTAAATGAATCGGGATAACTTTTATACCTAATTTAGAATAACAAGCAGTTAATAAATCGTACAATGGTTTTAAATTGATCAAAGCAAAATTAATATTATTTGAATGATTCAATATAAATGATTGAATAATTTCTTGATTTTGACTTGGTGACAATGTTGACGTTGAATAGACAACATAACCATTAGGTTGACATAATTCCATTGCTTGACGGAGAAGATTTAACTGAATTTTCGGTAATTGAGCACGTAAACGAGCTTGTCCCATTCCGAAAACGTGAGAATCACCAGATGTGATTGCATAACGATCAGCTGAACAAGGAACATTGAC]

[+] EMBL CD074917             [ATACAAAAATTGTTTACATAACAACAAAATTATCCCCCACTTGAAATAAATCAATTAAGGGAGACGTTTAAATTTAACAATAAAAGTTGGTCCATAATTACATGATATTGATGGGATAATTAATAAACCATGACATGTGTTATTCGAAGATAGATTTGTATCATGGTTCTCTTTACTCATATTATTATTATTATTATCAAATAAAGGTAAATGAATCGGGATAACTTTTATACCTAATTTAGAATAACAAGCAGTTAATAAATCGTACAATGGTTTTAAATTGATCAAAGCAAAATTAATATTATTTGAATGATTCAATATAAATGATTGAATAATTTCTTGATTTTGACTTGGTGACAATGTTGACGTTGAATAGACAACATAACCATTAGGTTGACATAATTCCATTGCTTGACGGAGAAGATTTAACTGAATTTTCGGTAATTGAGCACGTAAACGAGCTTGTCCCATTCCGAAAACGTGAGAATCACCAGATGTGATTGCATAACGATCAGCTGAACAAGGAACATTGAC]




>consensus_5999#0
ATACAAAAATTGTTTACATAACAACAAAATTATCCCCCACTTGAAATAAATCAATTAAGG
GAGACGTTTAAATTTAACAATAAAAGTTGGTCCATAATTACATGATATTGATGGGATAAT
TAATAAACCATGACATGTGTTATTCGAAGATAGATTTGTATCATGGTTCTCTTTACTCAT
ATTATTATTATTATTATCAAATAAAGGTAAATGAATCGGGATAACTTTTATACCTAATTT
AGAATAACAAGCAGTTAATAAATCGTACAATGGTTTTAAATTGATCAAAGCAAAATTAAT
ATTATTTGAATGATTCAATATAAATGATTGAATAATTTCTTGATTTTGACTTGGTGACAA
TGTTGACGTTGAATAGACAACATAACCATTAGGTTGACATAATTCCATTGCTTGACGGAG
AAGATTTAACTGAATTTTCGGTAATTGAGCACGTAAACGAGCTTGTCCCATTCCGAAAAC
GTGAGAATCACCAGATGTGATTGCATAACGATCAGCTGAACAAGGAACATTGAC

consensusID : consensus_5999#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [CTCCAGGCCAANAATTCGGCACGAGGGCGGATTTTACATTTTATTCTAAAGATTATTATGGTATGATTAAAGAAGATGGAAATGATTCATCTGGTTTACAGTCATTGAAAGTGTTAACTGAAAATTTTCATATACCCGAGAAGTTATGTATTAAATGTTCACCTCCTGGTAGATTGGTTACAATACCACATCCAACTTACTTAAATGGACAATTTAATTTTAATACAATCGATTTAAGCTCGGTTATAACTATTTTAGCATTGAATTTACAAAAGAATGATAATATGGTCAATATGTCTACATTTTCTGGGACTAAATCAGTTATTGCCCTACAGACCGGTTTATTAAATCGTTTATTATGTGTGTTACGTAGTCCATCTCGTAGTACTCATGTTCAACAAATGATTAACACTTTTAAAGCATCTGGAATTATATCTGAAGAGAATGATGATGAACAGAACAATAATACTAAAATCGACATTGTTTATTCACATGATGATTTGGCTGCTTATTTTTCTAA]

[+] EMBL CD081094             [CTCCAGGCCAANAATTCGGCACGAGGGCGGATTTTACATTTTATTCTAAAGATTATTATGGTATGATTAAAGAAGATGGAAATGATTCATCTGGTTTACAGTCATTGAAAGTGTTAACTGAAAATTTTCATATACCCGAGAAGTTATGTATTAAATGTTCACCTCCTGGTAGATTGGTTACAATACCACATCCAACTTACTTAAATGGACAATTTAATTTTAATACAATCGATTTAAGCTCGGTTATAACTATTTTAGCATTGAATTTACAAAAGAATGATAATATGGTCAATATGTCTACATTTTCTGGGACTAAATCAGTTATTGCCCTACAGACCGGTTTATTAAATCGTTTATTATGTGTGTTACGTAGTCCATCTCGTAGTACTCATGTTCAACAAATGATTAACACTTTTAAAGCATCTGGAATTATATCTGAAGAGAATGATGATGAACAGAACAATAATACTAAAATCGACATTGTTTATTCACATGATGATTTGGCTGCTTATTTTTCTAA]




>consensus_5999#1
CTCCAGGCCAANAATTCGGCACGAGGGCGGATTTTACATTTTATTCTAAAGATTATTATG
GTATGATTAAAGAAGATGGAAATGATTCATCTGGTTTACAGTCATTGAAAGTGTTAACTG
AAAATTTTCATATACCCGAGAAGTTATGTATTAAATGTTCACCTCCTGGTAGATTGGTTA
CAATACCACATCCAACTTACTTAAATGGACAATTTAATTTTAATACAATCGATTTAAGCT
CGGTTATAACTATTTTAGCATTGAATTTACAAAAGAATGATAATATGGTCAATATGTCTA
CATTTTCTGGGACTAAATCAGTTATTGCCCTACAGACCGGTTTATTAAATCGTTTATTAT
GTGTGTTACGTAGTCCATCTCGTAGTACTCATGTTCAACAAATGATTAACACTTTTAAAG
CATCTGGAATTATATCTGAAGAGAATGATGATGAACAGAACAATAATACTAAAATCGACA
TTGTTTATTCACATGATGATTTGGCTGCTTATTTTTCTAA

consensusID : consensus_5999#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [TTTCGGGCCGAAATTGCAAACTATTTTAGCATTGAATTTACAAAAGAATGATAATATGGTCAATATGTCTACATTTTCTGGGACTAAATCAGTTATTGCCCTACAGAACCGGTTTATTAAATCGTTTATTATGTGTGTTACGTAGTCCATCTCGTAGTACTCATGTTCAACAAATGATTAACACTTTTAAAGCATCTGGCATTATATCTGAAGAGAATGATGATGACAGACATATACTAAATCGCATTGTTTATTCACATGATGATTTGGCTGCTTATTTTCTAATGATATTGATAAGATTATAATTTAATAAGATTTAGTCAATGTTCCT]

[+] EMBL BE431257             [TTTCGGGCCGAAATTGCAAACTATTTTAGCATTGAATTTACAAAAGAATGATAATATGGTCAATATGTCTACATTTTCTGGGACTAAATCAGTTATTGCCCTACAGAACCGGTTTATTAAATCGTTTATTATGTGTGTTACGTAGTCCATCTCGTAGTACTCATGTTCAACAAATGATTAACACTTTTAAAGCATCTGGCATTATATCTGAAGAGAATGATGATGACAGACATATACTAAATCGCATTGTTTATTCACATGATGATTTGGCTGCTTATTTTCTAATGATATTGATAAGATTATAATTTAATAAGATTTAGTCAATGTTCCT]




>consensus_5999#2
TTTCGGGCCGAAATTGCAAACTATTTTAGCATTGAATTTACAAAAGAATGATAATATGGT
CAATATGTCTACATTTTCTGGGACTAAATCAGTTATTGCCCTACAGAACCGGTTTATTAA
ATCGTTTATTATGTGTGTTACGTAGTCCATCTCGTAGTACTCATGTTCAACAAATGATTA
ACACTTTTAAAGCATCTGGCATTATATCTGAAGAGAATGATGATGACAGACATATACTAA
ATCGCATTGTTTATTCACATGATGATTTGGCTGCTTATTTTCTAATGATATTGATAAGAT
TATAATTTAATAAGATTTAGTCAATGTTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5999#1      CTCCAGGCCAANAATTCGGCACGAGGGCGGATTTTACATTTTATTCTAAAGATTATTATG 60
consensus_5999#2      ------------------------------------------------------------
consensus_5999#0      -----------------------ATACAAAAATTGTTTACATAACAACAAAATTATCCCC 37
                                                                                  

consensus_5999#1      GTATGATTAAAGAAGATGGAAATGATTCATCTGGTTTACAGTCATTGAAAGTGTTAACTG 120
consensus_5999#2      ------------------------------------------------------------
consensus_5999#0      CACTTGAAATAAATCAATTAAGGGAGACGTTTAAATTTAACAATAAAAGTTGGTCCATAA 97
                                                                                  

consensus_5999#1      AAAATTTTCATATACCCGAGAAGTTATGTATTAAATGTTCACCTCCTGGTAGATTGGTTA 180
consensus_5999#2      ------------------------------------------------------------
consensus_5999#0      TTACATGATATTGATGGGATAATTAATAAACCATGACATGTGTTATTCGAAGATAGATTT 157
                                                                                  

consensus_5999#1      CAATACCACATCCAACTTACTTAAATGGACAATTTAATTTTAATACAATCGATTTAAGCT 240
consensus_5999#2      ----------------------------------------------TTTCGGGCCGAAAT 14
consensus_5999#0      GTAT-CATGGTTCTCTTTACTCATATTATTATTATTATTATCAAATAAAGGTAAATGAAT 216
                                                                        *        *

consensus_5999#1      CGGTTATAACTATTTTAGCA---TTGAATTTACAAAAGAATGATAATATGGTCAATATGT 297
consensus_5999#2      TGCA---AACTATTTTAGCA---TTGAATTTACAAAAGAATGATAATATGGTCAATATGT 68
consensus_5999#0      CGGG-ATAACTTTTATACCTAATTTAGAATAACAAGCAGTTAATAAATCGTACAATGGTT 275
                       *     **** ** ** *    **  * * ****     * ****   *  ****   *

consensus_5999#1      CTACATTTTCTGGGACTAAATCAGT--TATT------GCCCTACAGA-CCGGTTTATTAA 348
consensus_5999#2      CTACATTTTCTGGGACTAAATCAGT--TATT------GCCCTACAGAACCGGTTTATTAA 120
consensus_5999#0      TTAAATTGATCAAAGCAAAATTAATATTATTTGAATGATTCAATATAAATGATTGAATAA 335
                       ** ***        * **** * *  ****         * * * *   * ** * ***

consensus_5999#1      ATCGTTTATTATGTGT--GTTACGTAGTCCATCTCGTAGTACTCATGTTCAACAAATGAT 406
consensus_5999#2      ATCGTTTATTATGTGT--GTTACGTAGTCCATCTCGTAGTACTCATGTTCAACAAATGAT 178
consensus_5999#0      TTTCTTGATTTTGACTTGGTGACAATGTTGACGTTG-AATAGACAACATAACCATTAGGT 394
                       *  ** *** **  *  ** **   **  *  * * * **  **   * * **   * *

consensus_5999#1      TAACACTTTTAAAGCATCTG--GAATTATATCTGAAGAGAATGATGATGAACAGAACAAT 464
consensus_5999#2      TAACACTTTTAAAGCATCTG--GCATTATATCTGAAGAGAATGATGATGA-CAGACATAT 235
consensus_5999#0      TGACATAATTCCATTGCTTGACGGAGAAGATTTAACTGAATTTTCGGTAATTGAGCACGT 454
                      * ***   **  *     **  * *  * ** * *    * *   * * *         *

consensus_5999#1      AATACTAAAATCGACATTGTTTATTCACATGATGATTTGGCTGCTTATTTTTCTAA---- 520
consensus_5999#2      ACTA----AATCG-CATTGTTTATTCACATGATGATTTGGCTGCTTATTTT-CTAATGAT 289
consensus_5999#0      AAAC--GAGCTTGTCCCATTCCGAAAACGTGAGAATCACCAGATGTGATTGCATAACGAT 512
                      *         * * *    *      ** ***  **         *  **   ***    

consensus_5999#1      ------------------------------------------
consensus_5999#2      ATTGATAAGATTATAATTTAATAAGATTTAGTCAATGTTCCT 331
consensus_5999#0      CAGCTGAACAAGGAACATTGAC-------------------- 534