These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_600#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence [TTTCCAGTTGACTATCAAATGATATTTGAAATAAATAAATAAATAACACATAATATCGTTGGATATATTAGACTATAGGGAAAGTTTATAATATGATGATGACTAAAAGTTTGTACAGTCACTTAAACTGTAACATATAACCGAATGTATGGATTAACTATCTTATAAGTATAGAATTCAAATACATAAAAACGAAATGTTAAAATTCATTAATCACTACATCATTATAAAATACATTTATAGAGTAAACAATATAGTCATGGTAACTGGATCTATCTAGAAAGAAATAAAAAAAAGTTTTTTTTTTACAGTTTACCTCTTTTTTTAAAGAATAAAAATTTAATACATAAGAAGTACAATAAGAAGACAAAATTATTCTAAAAAAATGTTGCTCTATCGAAATTTATAAAAAGGGACTTTATTGCTTCCAATATATGAAGTATGAAGAATTCATGATTATCGAGAAATAGATTCACAAAATATTCATCTTACAATAAAAATCGAAATTATAGAGGGAAATGAATTAATGTAAATAAAGGAAGGAGATGATGATGAAATAAGAAATCCACGAGACTATACCATTTTTTCCACTAACTTAACAGGTTAAAATAATGAAAAATCTATACATGATTTGATACCAGATGAGACATGTACGGAATTATACAGAGTCGGCTTAATATATATATAGATATTCTTCTGTCAAATTGTTGATGATAACTATCCGTTCAAATGAAGCCATATAAAAATACATTAGGGTTGATGATCGTAATAATAATTCANAGTACTGATTGCTTTT] [+] EMBL CD074978 [TTTCCAGTTGACTATCAAATGATATTTGAAATAAATAAATAAATAACACATAATATCGTTGGATATATTAGACTATAGGGAAAGTTTATAATATGATGATGACTAAAAGTTTGTACAGTCACTTAAACTGTAACATATAACCGAATGTATGGATTAACTATCTTATAAGTATAGAATTCAAATACATAAAAACGAAATGTTAAAATTCATTAATCACTACATCATTATAAAATACATTTATAGAGTAAACAATATAGTCATGGTAACTGGATCTATCTAGAAAGAAATAAAAAAAAGTTTTTTTTTTACAGTTTACCTCTTTTTTTAAAGAATAAAAATTTAATACATAAGAAGTACAATAAGAAGACAAAATTATTCTAAAAAAATGTTGCTCTATCGAAATTTATAAAAAGGGACTTTATTGCTTCCAATATATGAAGTATGAAGAATTCATGATTATCGAGAAATAGATTCACAAAATATTCATCTTACAATAAAAATCGAAATTATAGAGGGAAATGAATTAATGTAAATAAAGGAAGGAGATGATGATGAAATAAGAAATCCACGAGACTATACCATTTTTTCCACTAACTTAACAGGTTAAAATAATGAAAAATCTATACATGATTTGATACCAGATGAGACATGTACGGAATTATACAGAGTCGGCTTAATATATATATAGATATTCTTCTGTCAAATTGTTGATGATAACTATCCGTTCAAATGAAGCCATATAAAAATACATTAGGGTTGATGATCGTAATAATAATTCANAGTACTGATTGCTTTT] consensusID : consensus_600#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [TTATCAAATGATATTTGAAATAAATAAATAAATAACCCATAATAAGGTTGGATATATTAGACTATAGGGAAAGTTTATAATATGATGATGACTAAAAGTTTGTACAGTCACTTAAACTGTAACATATAACCGAATGTATGGATTAACTATCTTATAAGTATAGAATTCAAATACATAAAAACGAAATGTTAAAATTCATTAATCACTACATCATTATAAAATACATTTATAGAGTAAACAATATAGTCATGGTAACTGGATCTATCTAGAAAGAAATAAAAAAAAGTTTTTTTTTTACAGTTTACCTCTTTTTTTAAAGAATAAAATTTAATACATAAGAAGTACAATAAGAAGACAAAATTATTCTAAAAAAATGTTGCTCTATCGAAATTTATAAAAAGGGACTTTATTGCTTCCAATATATGAAGTATGAAGAATTCATGATTATCGAGAAATAGATTCACAAAATATTCATCTTACAATAAAAATCGAAATTATAGAGGGAAATGAATTAATGTAAATAAAGGAAGGAGATGATGATGAAATAAGAAATCCACGAGACTATACCATTTTTTCCACTAACTTACCAGGTTAAAATAATGAAAAATCTATACATGATTTGATACCAGATGAGACATGTACGCCTCGTGCCGAATTATTGGCCCGGA] [-] EMBL CD082734 [TTATCAAATGATATTTGAAATAAATAAATAAATAACCCATAATAAGGTTGGATATATTAGACTATAGGGAAAGTTTATAATATGATGATGACTAAAAGTTTGTACAGTCACTTAAACTGTAACATATAACCGAATGTATGGATTAACTATCTTATAAGTATAGAATTCAAATACATAAAAACGAAATGTTAAAATTCATTAATCACTACATCATTATAAAATACATTTATAGAGTAAACAATATAGTCATGGTAACTGGATCTATCTAGAAAGAAATAAAAAAAAGTTTTTTTTTTACAGTTTACCTCTTTTTTTAAAGAATAAAATTTAATACATAAGAAGTACAATAAGAAGACAAAATTATTCTAAAAAAATGTTGCTCTATCGAAATTTATAAAAAGGGACTTTATTGCTTCCAATATATGAAGTATGAAGAATTCATGATTATCGAGAAATAGATTCACAAAATATTCATCTTACAATAAAAATCGAAATTATAGAGGGAAATGAATTAATGTAAATAAAGGAAGGAGATGATGATGAAATAAGAAATCCACGAGACTATACCATTTTTTCCACTAACTTACCAGGTTAAAATAATGAAAAATCTATACATGATTTGATACCAGATGAGACATGTACGCCTCGTGCCGAATTATTGGCCCGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_600#0 TTTCCAGTTGACTATCAAATGATATTTGAAATAAATAAATAAATAACACATAATATCGTT 60 consensus_600#1 -----------TTATCAAATGATATTTGAAATAAATAAATAAATAACCCATAATAAGGTT 49 *********************************** ******* *** consensus_600#0 GGATATATTAGACTATAGGGAAAGTTTATAATATGATGATGACTAAAAGTTTGTACAGTC 120 consensus_600#1 GGATATATTAGACTATAGGGAAAGTTTATAATATGATGATGACTAAAAGTTTGTACAGTC 109 ************************************************************ consensus_600#0 ACTTAAACTGTAACATATAACCGAATGTATGGATTAACTATCTTATAAGTATAGAATTCA 180 consensus_600#1 ACTTAAACTGTAACATATAACCGAATGTATGGATTAACTATCTTATAAGTATAGAATTCA 169 ************************************************************ consensus_600#0 AATACATAAAAACGAAATGTTAAAATTCATTAATCACTACATCATTATAAAATACATTTA 240 consensus_600#1 AATACATAAAAACGAAATGTTAAAATTCATTAATCACTACATCATTATAAAATACATTTA 229 ************************************************************ consensus_600#0 TAGAGTAAACAATATAGTCATGGTAACTGGATCTATCTAGAAAGAAATAAAAAAAAGTTT 300 consensus_600#1 TAGAGTAAACAATATAGTCATGGTAACTGGATCTATCTAGAAAGAAATAAAAAAAAGTTT 289 ************************************************************ consensus_600#0 TTTTTTTACAGTTTACCTCTTTTTTTAAAGAATAAAAATTTAATACATAAGAAGTACAAT 360 consensus_600#1 TTTTTTTACAGTTTACCTCTTTTTTTAAAGAATAAAA-TTTAATACATAAGAAGTACAAT 348 ************************************* ********************** consensus_600#0 AAGAAGACAAAATTATTCTAAAAAAATGTTGCTCTATCGAAATTTATAAAAAGGGACTTT 420 consensus_600#1 AAGAAGACAAAATTATTCTAAAAAAATGTTGCTCTATCGAAATTTATAAAAAGGGACTTT 408 ************************************************************ consensus_600#0 ATTGCTTCCAATATATGAAGTATGAAGAATTCATGATTATCGAGAAATAGATTCACAAAA 480 consensus_600#1 ATTGCTTCCAATATATGAAGTATGAAGAATTCATGATTATCGAGAAATAGATTCACAAAA 468 ************************************************************ consensus_600#0 TATTCATCTTACAATAAAAATCGAAATTATAGAGGGAAATGAATTAATGTAAATAAAGGA 540 consensus_600#1 TATTCATCTTACAATAAAAATCGAAATTATAGAGGGAAATGAATTAATGTAAATAAAGGA 528 ************************************************************ consensus_600#0 AGGAGATGATGATGAAATAAGAAATCCACGAGACTATACCATTTTTTCCACTAACTTAAC 600 consensus_600#1 AGGAGATGATGATGAAATAAGAAATCCACGAGACTATACCATTTTTTCCACTAACTTACC 588 ********************************************************** * consensus_600#0 AGGTTAAAATAATGAAAAATCTATACATGATTTGATACCAGATGAGACATGTACGGAATT 660 consensus_600#1 AGGTTAAAATAATGAAAAATCTATACATGATTTGATACCAGATGAGACATGTACGCC-TC 647 ******************************************************* * consensus_600#0 ATACAGAGTCGGCTTAATATATATATAGATATTCTTCTGTCAAATTGTTGATGATAACTA 720 consensus_600#1 GTGCCGAATTA--TTGGCCCGGA------------------------------------- 668 * * ** * ** * consensus_600#0 TCCGTTCAAATGAAGCCATATAAAAATACATTAGGGTTGATGATCGTAATAATAATTCAN 780 consensus_600#1 ------------------------------------------------------------ consensus_600#0 AGTACTGATTGCTTTT 796 consensus_600#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||