cluster # 6018

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Schistosoma mansoni
cluster # 6018 cluster # 6018 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6018#0 length = 396 sequences # 2

consensus_6018#1 length = 143 sequences # 2

consensusID : consensus_6018#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 396
fasta sequence

                              [GGAATTGTAAAGAAAACCTTCCTTACGTTTCATTGCGCCTCTTTTGCTTCTCCGTGTTTAACGGCAACGTATTTTCGTCTGGCGAAGAGTTCTTATTAGTAACATAGCATTTTTGGAACGATGCCAACAAATCATTGGCAGATTTGAGACTATCTATAAGAGGCGATCGTTTGCATGTTTGTAACTAACCGCATTTGTGGACAACACTGCACTTGAACGTAGACCAATTTTCTTTAGGTAGGTCATTGTTTTGCAGATGTAGATCAATCTGCTCCCTTGGATACAGACATAGTCTTTCTCCAATAACCCAATGGACAGCTGCAAACAGCAACTTATTTTAGCTTGGTGCGTTAACGATTACGTATTTATCGTTGGGAGACTAGTTGTAAAAAGCGG]

[+] EMBL CD157269             [GGAATTGTAAAGAAAACCTTCCTTACGTTTCATTGCGCCTCTTTTGCTTCTCCGTGTTTAACGGCAACGTATTTTCGTCTGGCGAAGAGTTCTTATTAGTAACATAGCATTTTTGGAACGATGCCAACAAATCATTGGCAGATTTGAGACTATCTATAAGAGGCGATCGTTTGCATGTTTGTAACTAACCGCATTTGTGGACAACACTGCACTTGAACGTAGACCAATTTTCTTTAGGTAGGTCATTGTTTTGCAGATGTAGATCAATCTGCTCCCTTGGATACAGACATAGTCTTTCTCCAATAACCCAATGGACAGCTGCAAACAGCAACTTATTTTAGCTTGGTGCGTTAACGATTACGTATTTATCGTTGGGAGACTAGTTGTAAAAAGCG ]
[-] EMBL CD157235             [ GAATTGTAAAGAAAACCTTCTTTACGTTTCATTGCGCCTCTTTTGCTTCTCCGTGTTTAACGGCAACGTATTTTCGTCTGGCGAAGAGTTCTTATTAGTAACATAGCATTTTTGGAACGATGCCAACAAATCATTGGCAGATTTGAGACTATCTATAAGAGGCGATCGTTTGCATGTTTGTAACTAACCGCATTTGTGGACAACACTGCACTTGAACATAGACCAATTTTCTTTAGGTAGGTCATTGTTTTGCAGATGTAGATCAATCTGCTCCCTTGGATACAGACATAGTTTTTCTCCAATAACCCAATGGCCAGCTGCAACCACCAACTTATTTTTGCTTGGTGCGTTAACGATTACGTATTTATTGTTGGGAGACTAGTTGTAAAAAGCGG]




>consensus_6018#0
GGAATTGTAAAGAAAACCTTCCTTACGTTTCATTGCGCCTCTTTTGCTTCTCCGTGTTTA
ACGGCAACGTATTTTCGTCTGGCGAAGAGTTCTTATTAGTAACATAGCATTTTTGGAACG
ATGCCAACAAATCATTGGCAGATTTGAGACTATCTATAAGAGGCGATCGTTTGCATGTTT
GTAACTAACCGCATTTGTGGACAACACTGCACTTGAACGTAGACCAATTTTCTTTAGGTA
GGTCATTGTTTTGCAGATGTAGATCAATCTGCTCCCTTGGATACAGACATAGTCTTTCTC
CAATAACCCAATGGACAGCTGCAAACAGCAACTTATTTTAGCTTGGTGCGTTAACGATTA
CGTATTTATCGTTGGGAGACTAGTTGTAAAAAGCGG

consensusID : consensus_6018#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 143
fasta sequence

                              [ATGCTATGTTACTAATAAGAACTCTTCGCCAGACGAAAATACGTTGCCGTTAAACACAGAGAAGCAAAAGGGGTCAGTTCAATAATTTTACTTAAATTTCGTAGAAGTGCACTGAAACGTAAAGAAGGTTTTCTTTACAATTC]

[+] EMBL CD192184             [ATGCTATGTTACTAATAAGAACTCTTCGCCAGACGAAAATACGTTGCCGTTAAACACAGAGAAGCAAAAGGGGTCAGTTCAATAATTTTACTTAAATTTCGTAGAAGTGCACTGAAACGTAAAGAAGGTTTTCTTTACAATTC]
[+] EMBL CD192239             [ATGCTATGTTACTAATAAGAACTCTTCGCCAGACGAAAATACGTTGCCGTTAAACACAGAGAAGCAAAAGGGGTCAGTTCAATAATTTTACTTAAATTTCGTAGAAGTGCACTGAAACGTAAAGAAGGTTTTCTTTACAATTC]




>consensus_6018#1
ATGCTATGTTACTAATAAGAACTCTTCGCCAGACGAAAATACGTTGCCGTTAAACACAGA
GAAGCAAAAGGGGTCAGTTCAATAATTTTACTTAAATTTCGTAGAAGTGCACTGAAACGT
AAAGAAGGTTTTCTTTACAATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6018#0      GGAATTGTAAAGAAAACCTTCCTTACGTTTCATTGCGCCTCTTTTGCTTCTCCGTGTTTA 60
consensus_6018#1      ------------------------------------------------------------
                                                                                  

consensus_6018#0      ACGGCAACGTATTTTCGTCTGGCGAAGAGTTCTTATTAGTAACATAGCATTTTTGGAACG 120
consensus_6018#1      ---------------------------ATGCTATGTTACTAATA-AGAACTCTTCGCCAG 32
                                                 *     * *** *** * ** * * ** *   *

consensus_6018#0      ATGCCAACAAATCATTGGCAGATTTGAGACTATCTATAAGAGGCGATCGTTTGCATGTTT 180
consensus_6018#1      ACGAAAATACGTTGCCGTTAAACAC-AGAGAAGC----AAAAGGGGTCAGTTCAATAATT 87
                      * *  ** *  *    *  * *    ***  * *    * * * * **  **  **  **

consensus_6018#0      GTAACTAACCGCATTTGTGGACAACACTGCACTTGAACGTAGACCAA-TTTTCTTTAGGT 239
consensus_6018#1      TTACTTAAAT---TTCGTAGA----AGTGCACTGAAACGTAAAGAAGGTTTTCTTTA--C 138
                       **  ***     ** ** **    * ******  ****** *  *  *********   

consensus_6018#0      AGGTCATTGTTTTGCAGATGTAGATCAATCTGCTCCCTTGGATACAGACATAGTCTTTCT 299
consensus_6018#1      AATTC------------------------------------------------------- 143
                      *  **                                                       

consensus_6018#0      CCAATAACCCAATGGACAGCTGCAAACAGCAACTTATTTTAGCTTGGTGCGTTAACGATT 359
consensus_6018#1      ------------------------------------------------------------
                                                                                  

consensus_6018#0      ACGTATTTATCGTTGGGAGACTAGTTGTAAAAAGCGG 396
consensus_6018#1      -------------------------------------