cluster # 6032

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Schistosoma mansoni
cluster # 6032 cluster # 6032 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6032#0 length = 586 sequences # 3

consensus_6032#1 length = 384 sequences # 1

consensusID : consensus_6032#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 586
fasta sequence

                              [TACGCAGTACGGTAATGCAGCTGCATGGCATG-TTTTTTTTTTTTTTTTTTTTTTTTTGAATAGGGAGAGTTATATTATGTTTTTTAAAAAATTCTAAAGACTTGTTACATTTATAATATTAATTGTTCGCCTGTCATTTTTGTAGTTTGCTTATGTTCATCGTAAATGCTAAGTGATAATTAGCCAATTGGGGTTTCACGAAAATACACTGAGCTCTTTGTATATAATACAGATAAATACGTAATTGCACACAGAAGTGAATGATTTATGCATTATTATTGACTGATAGTTTTAAAAAATTTGTTGTATAATCCCAAAGTTGACTAGCTAGATGAAGATTGAGTGAATTATCAGGCCAATCAATAGGTGTACAATTGTTATACAGCATACCGCTACCAGATGTTTCAGTTAAAATAGATTGAGCAGAGTTATTATGAGCAATAGGAACTTCATCACTAACTGCACAATGAACAATCGTTTGGCAACCCTCTATAGGAGATTTCAAGAGAAGTTGCATTANACCACGGATGANACGCTGAGTGAATGGTGAATATTTTATTANAGTATTTCGANAATAATTAGTATT]

[+] EMBL AI977715             [TACGCAGTACGGTAATGCAGCTGCATGGCATG TTTTTTTTTTTTTTTTTTTTTTTTTGAATAGGGAGAGTTATATTATGTTTTTTAAAAAATTCTAAAGACTTGTTACATTTATAATATTAATTGTTCGCCTGTCATTTTTGTAGTTTGCTTATGTTCATCGTAAATGCTAAGTGATAATTAGCCAATTGGGGTTTCACGAAAATACACTGAGCTCTTTGTATATAATACAGATAAATACGTAATTGCACACAGAAGTGAATGATTTATGCATTATTATTGACTGATAGTTTTAAAAAATTTGTTGTATAATCCCAAAGTTGACTAGCTAGATGAAGATTGAGTGAATTATCAGGCCAATCAATAGGTGTACAATTGTTATACAGCATACCGCTACCAGATGTTTCAGTTAAAATAGATTGAGCAGAGTTATTATGAGCAATAGGAACTTCATCACTAACTGCACAATGAACAA                                                                                                                ]
[+] EMBL AI976826             [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTGAATAGGGAGAGTTATATTATGTTTTTTAAAAAATTCTAAAGACTTGTTACATTTATAATATTAATTGTTCGCCTGTCATTTTTGTAGTTTGCTTATGTTCATCGTAAATGCTAAGTGATAATTAGCCAATTGGGGTTTCACGAAAATACACTGAGCTCTTTGTATATAATACAGATAAATACGTAATTGCACACAGAAGTGAATGATTTATGCATTATTATTGACTGATAGTTTTAAAAAATTTGTTGTATAATCCCAATGTTGACTATCTAGATGAAGATTGAGTGAATTATCAGGCCAATCAATAGGTGTACAATTGTTATACAGGATACCGCTACCAGATGTTTCAGTTAAAATAGATCGAGCAGAGTTATTATG                                                                                                                                                      ]
[+] EMBL CD181724             [                                                                                                                                                                                                                                                                              GCATTATCATTGACTGATAGTTTTAAAAAATTTGTTGTATAGTCCCAAAGTTGACTAGCTAGATGAAGATTGAGTGAATTATCAGGCCAATCAATAGGTGTACAATTGTTATACAGCATACCGCTACCAGATGTTTCAGTTAAAATAGATTGAGCAGAGTTATTATGAGCAATAGGAACTTCATCACTAACTGCACAATGAACAATCGTTTGGCAACCCTCTATAGGAGATTTCAAGAGAAGTTGCATTANACCACGGATGANACGCTGAGTGAATGGTGAATATTTTATTANAGTATTTCGANAATAATTAGTATT]




>consensus_6032#0
TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTGAA
TAGGGAGAGTTATATTATGTTTTTTAAAAAATTCTAAAGACTTGTTACATTTATAATATT
AATTGTTCGCCTGTCATTTTTGTAGTTTGCTTATGTTCATCGTAAATGCTAAGTGATAAT
TAGCCAATTGGGGTTTCACGAAAATACACTGAGCTCTTTGTATATAATACAGATAAATAC
GTAATTGCACACAGAAGTGAATGATTTATGCATTATTATTGACTGATAGTTTTAAAAAAT
TTGTTGTATAATCCCAAAGTTGACTAGCTAGATGAAGATTGAGTGAATTATCAGGCCAAT
CAATAGGTGTACAATTGTTATACAGCATACCGCTACCAGATGTTTCAGTTAAAATAGATT
GAGCAGAGTTATTATGAGCAATAGGAACTTCATCACTAACTGCACAATGAACAATCGTTT
GGCAACCCTCTATAGGAGATTTCAAGAGAAGTTGCATTANACCACGGATGANACGCTGAG
TGAATGGTGAATATTTTATTANAGTATTTCGANAATAATTAGTATT

consensusID : consensus_6032#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [CAGTGTACCCGTGTAGCAAATGTTTCAGTTAAAATAGATTGAGCAGAGTTATTATGAGCAATAGGAACTTCATCACTAACTGCACAATGAACAATCGTTTGGCAACCCTCTATAGATTTCAAGAGAAGTTGCATTAAACCACGGATGAAACGCTGAGTGAATGGTGAATATTTTATTAAAGTATTTCGAAATAAATTAGTATTTACCATCCCTCCGGTAAATAAACAATAAACATCAAGTACTTTATTGGCACCTGAACCATACCTCTGATGAAGTTCGCGTGAAAATAAATTGCAAGCCAGTTTAGAATCGGAATAAGCTTTATTGGAATTTAAATCTGAAGCAGTATTGTACGGTTGAAACAAATCTTCTGTAGAGAACGTT]

[+] EMBL CD113708             [CAGTGTACCCGTGTAGCAAATGTTTCAGTTAAAATAGATTGAGCAGAGTTATTATGAGCAATAGGAACTTCATCACTAACTGCACAATGAACAATCGTTTGGCAACCCTCTATAGATTTCAAGAGAAGTTGCATTAAACCACGGATGAAACGCTGAGTGAATGGTGAATATTTTATTAAAGTATTTCGAAATAAATTAGTATTTACCATCCCTCCGGTAAATAAACAATAAACATCAAGTACTTTATTGGCACCTGAACCATACCTCTGATGAAGTTCGCGTGAAAATAAATTGCAAGCCAGTTTAGAATCGGAATAAGCTTTATTGGAATTTAAATCTGAAGCAGTATTGTACGGTTGAAACAAATCTTCTGTAGAGAACGTT]




>consensus_6032#1
CAGTGTACCCGTGTAGCAAATGTTTCAGTTAAAATAGATTGAGCAGAGTTATTATGAGCA
ATAGGAACTTCATCACTAACTGCACAATGAACAATCGTTTGGCAACCCTCTATAGATTTC
AAGAGAAGTTGCATTAAACCACGGATGAAACGCTGAGTGAATGGTGAATATTTTATTAAA
GTATTTCGAAATAAATTAGTATTTACCATCCCTCCGGTAAATAAACAATAAACATCAAGT
ACTTTATTGGCACCTGAACCATACCTCTGATGAAGTTCGCGTGAAAATAAATTGCAAGCC
AGTTTAGAATCGGAATAAGCTTTATTGGAATTTAAATCTGAAGCAGTATTGTACGGTTGA
AACAAATCTTCTGTAGAGAACGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6032#0      TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTGAA 60
consensus_6032#1      ------------------------------------------------------------
                                                                                  

consensus_6032#0      TAGGGAGAGTTATATTATGTTTTTTAAAAAATTCTAAAGACTTGTTACATTTATAATATT 120
consensus_6032#1      ------------------------------------------------------------
                                                                                  

consensus_6032#0      AATTGTTCGCCTGTCATTTTTGTAGTTTGCTTATGTTCATCGTAAATGCTAAGTGATAAT 180
consensus_6032#1      --------------------------------------------------CAGTG-TACC 9
                                                                         **** **  

consensus_6032#0      TAGCCAATTGGGGTTTCA-CGAAAATACACTGAGCTCTTTGTATATAATACAGATAAATA 239
consensus_6032#1      CGTGTAGCAAATGTTTCAGTTAAAATAGATTGAGCAGAGTTATTATGA-GCA-ATAGGAA 67
                           *      ******   ****** * *****    *   *** *  ** ***   *

consensus_6032#0      CGTAATTGCACACAGAAGTGAATGATTTATGCATTATTATTGACTGATAGTTTTAAAAAA 299
consensus_6032#1      CTTCATCACTAACTGCA--CAATGAACAATCGTTTGGCAACCCTCTATAGATTTCAAGAG 125
                      * * **  *  ** * *   *****   **   **   *       **** *** ** * 

consensus_6032#0      TTTGTTGTATAATCCCAAAGTTGACTAGCTAGATGAAGATTGAGTGAATTATCAGGCCAA 359
consensus_6032#1      AA-GTTGCATTAAACCACGGATGAAACGCTGAGTGAATGGTGAATATTTTATTAAAGTAT 184
                         **** ** *  ***  * ***   ***   ****   *** *   **** *    * 

consensus_6032#0      TCAATAGGTGTACAATTGTTATACAGCATACCGCTACCAGATGTTTCAGTTAAAATAGAT 419
consensus_6032#1      T---TCGAAATA-AATTAGTATTTACCATCCCTCCGGTAAAT-----AAACAATAAACAT 235
                      *   * *   ** ****  ***  * *** ** *    * **     *   ** * * **

consensus_6032#0      TGAGCAGAGTTATTATGAGCAATAGGAACTTCATCACTAACTGCACAATGAACAATCGTT 479
consensus_6032#1      CAAGTACT-TTATTGGCACCTGAACCATACCTCTGATGAAGTTCGCG-TGAA-AATAAAT 292
                        ** *   *****   * *   *  *      * *  ** * * *  **** ***   *

consensus_6032#0      TGGCAACCCTCTATAGGAGATTTCAAGAGAAGTTGCATTANACCACGGATGANACGCTGA 539
consensus_6032#1      TG-CAAGCCAGTTTAGAA----TCGGAATAAGCTTTATTGGA------ATTTAAATCTGA 341
                      ** *** **  * *** *    **   * *** *  ***  *      **   *  ****

consensus_6032#0      GTGAATGGTGAATATTTTATTANAGTATTTCGANAATAATTAGTATT 586
consensus_6032#1      AGCAGTATTGTACGGTTGAAACAAATCTTCTGTAGAGAACGTT---- 384
                         * *  ** *   ** *    * * **  *   * **