cluster # 6034

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Schistosoma mansoni
cluster # 6034 cluster # 6034 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6034#0 length = 411 sequences # 3

consensus_6034#1 length = 232 sequences # 1

consensusID : consensus_6034#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 411
fasta sequence

                              [TTTTGTGGGTAGTCTCAGTCACCACTCATGTATGGCGGTTTATCCTTTGGTCTCCTCTGGACAGTAAAATGGGTGTTTAAATCAAATGTTACTTCTTAAAACTATTATTACTTATCTATATTTGTTGGTCTCATTG-AGAATTTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTGCACACATCATTGGCTGATATTTACATCGTTAATAACCATAATAGCATTTTAGGAAGAGCTGAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTACATGCAATGTTAGCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCAAGATTTGGTCTCCGTGCTCCGGAATTCATAATCAGAAGGTATCTGATTTCTCCCAGTCGCCCAACTAAA]

[+] EMBL CD200774             [TTTTGTGGGTAGTCTCAGTCACCACTCATGTATGGCGGTTTATCCTTTGGTCTCCTCTGGACAGTAAAATGGGTGTTTAAATCAAATGTTACTTCTTAAAACTATTATTACTTATCTATATTTGTTGGTCTCATTGTTGCA GTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTGCACACATCATTGGCTGATATTTACTTCGTTAATAACCATAATACCATTTTAGGAAGAGCTGAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTACATGCAATGTTAGCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCAAGATTTGTTCT                                                          ]
[+] EMBL CD184032             [                                                                                                                                         AGAATTTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTGCACACATCATTGGCTGATATTTACATCGTTAATAACCATAATAGCATTTTAGGAAGAGCTGAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTACATGCAATGTTAGCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCAAGATTTGGTCTCCGTGCTCCGGAATTCATAATCAGAAGGTATCTGATTTCTCCCAGTCGCCCAACTAAA]
[+] EMBL CD183956             [                                                                                                                                         AGAATTTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTGCACACATCATTGGCTGATATTTACATCGTTAATAACCATAATAGCATTTTAGGAAGAGCTGAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTACATGCAATGTTAGCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCAAGATTTGGTCTCCGTGCTCCGGAATTCATAATCAGAAGGTATCTGATTTCTCCCAGTCGCCCAACTAAA]




>consensus_6034#0
TTTTGTGGGTAGTCTCAGTCACCACTCATGTATGGCGGTTTATCCTTTGGTCTCCTCTGG
ACAGTAAAATGGGTGTTTAAATCAAATGTTACTTCTTAAAACTATTATTACTTATCTATA
TTTGTTGGTCTCATTGAGAATTTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTG
CACACATCATTGGCTGATATTTACATCGTTAATAACCATAATAGCATTTTAGGAAGAGCT
GAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTACATGCAATGTTA
GCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCAAGATTTGGTCTCCGTGCT
CCGGAATTCATAATCAGAAGGTATCTGATTTCTCCCAGTCGCCCAACTAAA

consensusID : consensus_6034#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 232
fasta sequence

                              [ATTTGGCGCAAATATTCAGCTGACAACTGCCTTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTGCACACATCATTGGCTGATATTTACATCGTTAATAACCATAATAGCATTTTAGGAAGAGCTGAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTATATGCAATGTTAGCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCA]

[-] EMBL CD201170             [ATTTGGCGCAAATATTCAGCTGACAACTGCCTTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTGCACACATCATTGGCTGATATTTACATCGTTAATAACCATAATAGCATTTTAGGAAGAGCTGAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTATATGCAATGTTAGCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCA]




>consensus_6034#1
ATTTGGCGCAAATATTCAGCTGACAACTGCCTTCCGCCTATGTCCTGCTCCTTGATTAAT
CTGTGTTTTGCACACATCATTGGCTGATATTTACATCGTTAATAACCATAATAGCATTTT
AGGAAGAGCTGAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTATA
TGCAATGTTAGCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6034#0      TTTTGTGGGTAGTCTCAGTCACCACTCATGTATGGCGGTTTATCCTTTGGTCTCCTCTGG 60
consensus_6034#1      ------------------------------------------------------------
                                                                                  

consensus_6034#0      ACAGTAAAATGGGTGTTTAAATCAAATGTTACTTCTTAAAACTATTATTACTTATCTATA 120
consensus_6034#1      -------------------------------------------------ATTTGGC-GCA 10
                                                                       * **  *   *

consensus_6034#0      TTTGTTGGTCTCATTGAGAATTTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTG 180
consensus_6034#1      AATATTCAGCTGACAACTGCCTTCCGCCTATGTCCTGCTCCTTGATTAATCTGTGTTTTG 70
                        * **   ** *        ***************************************

consensus_6034#0      CACACATCATTGGCTGATATTTACATCGTTAATAACCATAATAGCATTTTAGGAAGAGCT 240
consensus_6034#1      CACACATCATTGGCTGATATTTACATCGTTAATAACCATAATAGCATTTTAGGAAGAGCT 130
                      ************************************************************

consensus_6034#0      GAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTACATGCAATGTTA 300
consensus_6034#1      GAAACCGATAGGTCCGACAGACACTAACCGTCTTCTTCCAAACAATTATATGCAATGTTA 190
                      ************************************************ ***********

consensus_6034#0      GCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCAAGATTTGGTCTCCGTGCT 360
consensus_6034#1      GCTGCTTGCTTAACAAATAAACTTGGCATTGGTTTATTACCA------------------ 232
                      ******************************************                  

consensus_6034#0      CCGGAATTCATAATCAGAAGGTATCTGATTTCTCCCAGTCGCCCAACTAAA 411
consensus_6034#1      ---------------------------------------------------