cluster # 6049

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Schistosoma mansoni
cluster # 6049 cluster # 6049 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6049#0 length = 542 sequences # 1

consensus_6049#1 length = 456 sequences # 3

consensusID : consensus_6049#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 542
fasta sequence

                              [TCAGCTTTTGTTTCATAATGTAATACTGTCTCTGATATTATATCACTCATTTAATGGCAAGTGGATAGACTGATTAAATGCGCTGCGCATTATATGGTCATAGCTTCTTGCTAAATGGAATTGATGTTGGTGCAATCGCTGTAATGCCCATTTGTGATTGTGTCGTTAAACATTGTGATCCTGGCGGAGGCGGTGCAGGAGCTCGAGGAGGTGGTAATTGTGGGGTTAAGAAGTTAGAAGCTTGATACTGAAAATACGTCGCAGAACCATTATGTTTAACGGATGCGACTACAGAAATAGATGTGTCATTAAGTACACCATTTGTGTTGTGAAGATTAGAAGAAACACTGTTATGCCCAACCGTCGCTGGTGCGCTCATAGCATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCACAATATGTAGTTGTGTAAGCCTCTTGCATACCATTTANGAAACCGTTTGTACCACCTAGTTTAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCTATGATTTGAGTCATTAAGA]

[+] EMBL CD200981             [TCAGCTTTTGTTTCATAATGTAATACTGTCTCTGATATTATATCACTCATTTAATGGCAAGTGGATAGACTGATTAAATGCGCTGCGCATTATATGGTCATAGCTTCTTGCTAAATGGAATTGATGTTGGTGCAATCGCTGTAATGCCCATTTGTGATTGTGTCGTTAAACATTGTGATCCTGGCGGAGGCGGTGCAGGAGCTCGAGGAGGTGGTAATTGTGGGGTTAAGAAGTTAGAAGCTTGATACTGAAAATACGTCGCAGAACCATTATGTTTAACGGATGCGACTACAGAAATAGATGTGTCATTAAGTACACCATTTGTGTTGTGAAGATTAGAAGAAACACTGTTATGCCCAACCGTCGCTGGTGCGCTCATAGCATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCACAATATGTAGTTGTGTAAGCCTCTTGCATACCATTTANGAAACCGTTTGTACCACCTAGTTTAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCTATGATTTGAGTCATTAAGA]




>consensus_6049#0
TCAGCTTTTGTTTCATAATGTAATACTGTCTCTGATATTATATCACTCATTTAATGGCAA
GTGGATAGACTGATTAAATGCGCTGCGCATTATATGGTCATAGCTTCTTGCTAAATGGAA
TTGATGTTGGTGCAATCGCTGTAATGCCCATTTGTGATTGTGTCGTTAAACATTGTGATC
CTGGCGGAGGCGGTGCAGGAGCTCGAGGAGGTGGTAATTGTGGGGTTAAGAAGTTAGAAG
CTTGATACTGAAAATACGTCGCAGAACCATTATGTTTAACGGATGCGACTACAGAAATAG
ATGTGTCATTAAGTACACCATTTGTGTTGTGAAGATTAGAAGAAACACTGTTATGCCCAA
CCGTCGCTGGTGCGCTCATAGCATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCAC
AATATGTAGTTGTGTAAGCCTCTTGCATACCATTTANGAAACCGTTTGTACCACCTAGTT
TAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCTATGATTTGAGTCATTAA
GA

consensusID : consensus_6049#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 456
fasta sequence

                              [ATATGGTGGCTCGGTCAGGTTAAATGGAATTGATGTTGGTGCAATCGCTGTAATGCCCATTTGTGATTGTGTCGTTAAACATTGTGATCCTGGCGGAGGCGGTGCAGGAGCTCGAGGAGGTGGTAATTATGGGGTTAAGAAGTTAGAAGCTTGATACTGAAAATACTTTTTAGAACCATTATGTTTAACGGATGCGACTGCAGAAATAGATGTGTCATTAAGTACACCATTTGTGTTGTGAAGATTAGAAGAAACACTGTTATGCCCAACCGTCGCTGGTGCGCTCATAGCATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCACAATATGTAGTTGTGTAAGCCTCTTGCATACCATTTAGGAAACCGTTTGTACCACCTAGTTTAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCTATGATTTGAGTCATTAGGAGCCGG]

[+] EMBL CD129907             [ATATGGTGGCTCGGTCAGGTTAAATGGAATTGATGTTGGTGCAATCGCTGTAATGCCCATTTGTGATTGTGTCGTTAAACATTGTGATCCTGGCGGAGGCGGTGCAGGAGCTCGAGGAGGTGGTAATTATGGGGTTAAGAAGTTAGAAGCTTGATACTGAAAATACTTTTTAGAACCATTATGTTTAACGGATGCGACTGCAGAAATAGATGTGTCATTAAGTACACCATTTGTGTTGTGAAGATTAGAAGAAACACTGTTATGCCCAACCGTCGCTGGTGCGCTCATAGCATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCACAATATGTAGTTGTGTAAGCCTCTTGCATACCATTTAGGAAACCGTTTGTACCACCTAGTTTAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCT                        ]
[-] EMBL CD169323             [  ATGGTGGGTCGGTCAGGTTAAATGGAATTGATGTTGGTGCAATCGCTGTAATGCCCATTTGTGATTGTGTCGTTAAACATTGTGATCCTGGCGGAGGCGGTGCAGGAGCTCGAGGAGGTGGTAATTGTGGGGTTAAGAAGTTAGGAGCTTGATACTGAAAATACGTCGCAGAACCATTATGTTTAACGGATGCGACTGCAGAAATAGATGTGTCATTAAGTACACCATTTGTGTTGTGAAGATTAGAAGAAACACTGTTATGCCCAACCGTCGCTGGTGCGCTCATAGCATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCACAATATGTAGTTGTGTAAGCCTCTTGCATACCATTTAGGAAACCGTTTGTACCACCTAGTTTAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCTATGATTTGAGTCATTAGGAGCCGG]
[-] EMBL CD155629             [                                                                                                                                                                                                                                                                     ATGCCCAACCGTCGCTGGTGCGCTCATAGTATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCACAATATGTAGTTGTGTAAGCCTCTTGCATACCATTTAGGAAACCGTTTGTACCACCTAGTTTAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCTATGATTTGAGTCATTAG       ]




>consensus_6049#1
ATATGGTGGCTCGGTCAGGTTAAATGGAATTGATGTTGGTGCAATCGCTGTAATGCCCAT
TTGTGATTGTGTCGTTAAACATTGTGATCCTGGCGGAGGCGGTGCAGGAGCTCGAGGAGG
TGGTAATTATGGGGTTAAGAAGTTAGAAGCTTGATACTGAAAATACTTTTTAGAACCATT
ATGTTTAACGGATGCGACTGCAGAAATAGATGTGTCATTAAGTACACCATTTGTGTTGTG
AAGATTAGAAGAAACACTGTTATGCCCAACCGTCGCTGGTGCGCTCATAGCATTGGCATC
ACTTGTGCTGCAAATCGTATTACTTCCACAATATGTAGTTGTGTAAGCCTCTTGCATACC
ATTTAGGAAACCGTTTGTACCACCTAGTTTAATACCAGCTCCCATTCCAGGGACTCTTCT
TTGCTTGCTGCTATGATTTGAGTCATTAGGAGCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6049#0      TCAGCTTTTGTTTCATAATGTAATACTGTCTCTGATATTATATCACTCATTTAATGGCAA 60
consensus_6049#1      ------------------------------------------------------------
                                                                                  

consensus_6049#0      GTGGATAGACTGATTAAATGCGCTGCGCATTATATGGTCATAGCTTCTTGCTAAATGGAA 120
consensus_6049#1      -------------------------------ATATGGTGGCTCGGTCAGGTTAAATGGAA 29
                                                     *******       **  * *********

consensus_6049#0      TTGATGTTGGTGCAATCGCTGTAATGCCCATTTGTGATTGTGTCGTTAAACATTGTGATC 180
consensus_6049#1      TTGATGTTGGTGCAATCGCTGTAATGCCCATTTGTGATTGTGTCGTTAAACATTGTGATC 89
                      ************************************************************

consensus_6049#0      CTGGCGGAGGCGGTGCAGGAGCTCGAGGAGGTGGTAATTGTGGGGTTAAGAAGTTAGAAG 240
consensus_6049#1      CTGGCGGAGGCGGTGCAGGAGCTCGAGGAGGTGGTAATTATGGGGTTAAGAAGTTAGAAG 149
                      *************************************** ********************

consensus_6049#0      CTTGATACTGAAAATACGTCGCAGAACCATTATGTTTAACGGATGCGACTACAGAAATAG 300
consensus_6049#1      CTTGATACTGAAAATACTTTTTAGAACCATTATGTTTAACGGATGCGACTGCAGAAATAG 209
                      ***************** *   **************************** *********

consensus_6049#0      ATGTGTCATTAAGTACACCATTTGTGTTGTGAAGATTAGAAGAAACACTGTTATGCCCAA 360
consensus_6049#1      ATGTGTCATTAAGTACACCATTTGTGTTGTGAAGATTAGAAGAAACACTGTTATGCCCAA 269
                      ************************************************************

consensus_6049#0      CCGTCGCTGGTGCGCTCATAGCATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCAC 420
consensus_6049#1      CCGTCGCTGGTGCGCTCATAGCATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCAC 329
                      ************************************************************

consensus_6049#0      AATATGTAGTTGTGTAAGCCTCTTGCATACCATTTANGAAACCGTTTGTACCACCTAGTT 480
consensus_6049#1      AATATGTAGTTGTGTAAGCCTCTTGCATACCATTTAGGAAACCGTTTGTACCACCTAGTT 389
                      ************************************ ***********************

consensus_6049#0      TAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCTATGATTTGAGTCATTAA 540
consensus_6049#1      TAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCTATGATTTGAGTCATTAG 449
                      *********************************************************** 

consensus_6049#0      GA----- 542
consensus_6049#1      GAGCCGG 456
                      **