cluster # 6051

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Schistosoma mansoni
cluster # 6051 cluster # 6051 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6051#0 length = 602 sequences # 3

consensus_6051#1 length = 241 sequences # 1

consensusID : consensus_6051#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 602
fasta sequence

                              [TTCTATTGCACTAGAGGCGCTTACTAGGCAGTAAAATAGAAGAAAACCAACGACAAAATCTTGGTCTTTTATGTGCTGGAATGCGACGTGAAGTTCAGCTCCTAATAGCTGAGGGAATATCTTTAGTTTGGGAATCGTATCGTTTAGGTTTATTTGTTCAACGTTTTGCAGAAACAGTATTACAGTTCCAAGAGAAAGTCGATGATCTTCTAGTTACCACTCGAGAAATAGATAGGGAAGTCAAAGCATTAGAAACCTGTGTTTTTTCCAAGTCGGTTTTCGAGGAGATTCTAGGTAAAATCCAGAAATCGGTGGACGAATTAAATCCGCACCAATATTCAAATCTTCCCCAATGGGTTGCTCGTTTAGA-TGAAGAAGTTGAACATCGTCTGGTTGCACGCCTTGAGGCTAGTATTTCTGAATGGACACGTGTTTTATTAGGTCAGAAAGACCAGTTCGATGCAAATGATTCGGATGATACTCATTCGACATCACAGTCCAAAAATCGTTTAGGTGGTGAACCGCAAATAAAGGCCCTTGTTCATGAACTTAGAATAACCAATCAACAGATTCATCTACATCCTAGTATTGAAGTAGCTCGA]

[+] EMBL CD191201             [TTCTATTGCACTAGAGGCGCTTACTAGGCAGTAAAATAGAAGAAAACCAACGACAAAATCTTGGTCTTTTATGTGCTGGAATGCGACGTGAAGTTCAGCTCCTAATAGCTGAGGGAATATCTTTAGTTTGGGAATCGTATCGTTTAGGTTTATTTGTTCAACGTTTTGCAGAAACAGTATTACAGTTCCAAGAGAAAGTCGATGATCTTCTAGTTACCACTCGAGAAATAGATAGGGAAGTCAAAGCATTAGAAACCTGTGTTTTTTCCAAGTCGGTTTTCGAGGAGATTCTAGGTAAAATCCAGAAATCGGTGGACGAATTAAATCCGCACCAATATTCAAATCTTCCCCAATGGGTTGCTCGTTTAGATTGAATAAGTTGAACATCGTCTGGTTGCA                                                                                                                                                                                                            ]
[+] EMBL CD191348             [                                    TAGAAGATAACCAACGACAAAATCTTGGTCTTTTATGTGCTGGAATGCGACGTGAAGTTCAGCTCCTAATAGCTGAGGGAATATCTTTAGTTTGGGAATCGTATCGTTTAGGTTTATTTGTTCAACGTTTTGCAGAAACAGTATTACAGTTCCAAGAGAAAGTCGATGATCTTCTAGTTACCACTCGAGAAATAGATAGGGAAGTCAAAGCATTAGAAACCTGTGTTTTTTCCAAGTCGGTTTTCGAGGAGATTCTAGGTAAAATCCAGAAATCGGTGGACGAATTAAATCCGCACCAATATTCAAATCTTCCCCAATGGGTTGCTCGTTTAGA TGAAGAAGTTGAACATCGTCTGGTTGCA                                                                                                                                                                                                            ]
[+] EMBL CD184690             [                                                                                                                                          ATCGTTTAGGTTTATTTGTTCAACGTTTTGCAGAAACAGTATTACAGTTCCAAGAGAAAGTCGATGATCTTCTAGTTACCACTCGAGAAATAGATAGGGAAGTCAAAGCATTAGAAACCTGTGTTTTTTCCAAGTCGGTTTTCGAGGAGATTCTAGGTAAAATCCAGAAATCGGTGGACGAATTAAATCTGCACCAATATTCAAATCTTCCCCAATGGGTTGCTCGTTTAGA TGAAGAAGTTGAACATCGTCTGGTTGCACGCCTTGAGGCTAGTATTTCTGAATGGACACGTGTTTTATTAGGTCAGAAAGACCAGTTCGATGCAAATGATTCGGATGATACTCATTCGACATCACAGTCCAAAAATCGTTTAGGTGGTGAACCGCAAATAAAGGCCCTTGTTCATGAACTTAGAATAACCAATCAACAGATTCATCTACATCCTAGTATTGAAGTAGCTCGA]




>consensus_6051#0
TTCTATTGCACTAGAGGCGCTTACTAGGCAGTAAAATAGAAGAAAACCAACGACAAAATC
TTGGTCTTTTATGTGCTGGAATGCGACGTGAAGTTCAGCTCCTAATAGCTGAGGGAATAT
CTTTAGTTTGGGAATCGTATCGTTTAGGTTTATTTGTTCAACGTTTTGCAGAAACAGTAT
TACAGTTCCAAGAGAAAGTCGATGATCTTCTAGTTACCACTCGAGAAATAGATAGGGAAG
TCAAAGCATTAGAAACCTGTGTTTTTTCCAAGTCGGTTTTCGAGGAGATTCTAGGTAAAA
TCCAGAAATCGGTGGACGAATTAAATCCGCACCAATATTCAAATCTTCCCCAATGGGTTG
CTCGTTTAGATGAAGAAGTTGAACATCGTCTGGTTGCACGCCTTGAGGCTAGTATTTCTG
AATGGACACGTGTTTTATTAGGTCAGAAAGACCAGTTCGATGCAAATGATTCGGATGATA
CTCATTCGACATCACAGTCCAAAAATCGTTTAGGTGGTGAACCGCAAATAAAGGCCCTTG
TTCATGAACTTAGAATAACCAATCAACAGATTCATCTACATCCTAGTATTGAAGTAGCTC
GA

consensusID : consensus_6051#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 241
fasta sequence

                              [CTAAAGATATTCCCTCAGCTATTAGGAGCTGAACTTCACGTCGCATTCCAGCACATAAAAGACCAAGATTTTGTCGTTGGTTTTCTTCTATTTTACTGCAAGCACTTTCATAAGTTCGCACACTTTCGATAAGTGATATTGCATATGGATAGAGCTGATTGGTTTGATGAGCTCTATTAACTATTCCAAGAGGTACACGAAAGCCAAGCCATTTCATATTTCGTACCTCCTTGGCAAGCGT]

[+] EMBL CD193975             [CTAAAGATATTCCCTCAGCTATTAGGAGCTGAACTTCACGTCGCATTCCAGCACATAAAAGACCAAGATTTTGTCGTTGGTTTTCTTCTATTTTACTGCAAGCACTTTCATAAGTTCGCACACTTTCGATAAGTGATATTGCATATGGATAGAGCTGATTGGTTTGATGAGCTCTATTAACTATTCCAAGAGGTACACGAAAGCCAAGCCATTTCATATTTCGTACCTCCTTGGCAAGCGT]




>consensus_6051#1
CTAAAGATATTCCCTCAGCTATTAGGAGCTGAACTTCACGTCGCATTCCAGCACATAAAA
GACCAAGATTTTGTCGTTGGTTTTCTTCTATTTTACTGCAAGCACTTTCATAAGTTCGCA
CACTTTCGATAAGTGATATTGCATATGGATAGAGCTGATTGGTTTGATGAGCTCTATTAA
CTATTCCAAGAGGTACACGAAAGCCAAGCCATTTCATATTTCGTACCTCCTTGGCAAGCG
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6051#0      TTCTATTGCACTAGAGGCGCTTACTAGGCAGTAAAATAGAAGAAAACCAACGACAAAATC 60
consensus_6051#1      ----------------------------------------------CTAAAGATATTCCC 14
                                                                    * ** ** *    *

consensus_6051#0      TTGGTCTTTTATGTGCTGGAATGCGACGTGAAGTTCAGCTCCTAATAG-CTGAGGGAATA 119
consensus_6051#1      TCAG-CTATTAGGAGCTGAACTTCACGTCGCATTCCAGCACATAAAAGACCAAGATTTTG 73
                      *  * ** *** * **** * * *     * * * **** * *** ** *  **    * 

consensus_6051#0      TCTTTAGTTTGGGAATCGTATCGTTTAGG----TTTATTTGTTCA-ACGTTTTGCAGAAA 174
consensus_6051#1      TCGTTGGTTTTCTTCTATTTTACTGCAAGCACTTTCATAAGTTCGCACACTTTCGATAAG 133
                      ** ** ****     *  * *  *  * *    ** **  ****  **  ***  * ** 

consensus_6051#0      CAGTATTACAGTTCCA-AGAGAAAGTCGAT--GATC--TTCTAGTTACCACTCGAGAAAT 229
consensus_6051#1      TGATATTGCATATGGATAGAGCTGATTGGTTTGATGAGCTCTATTAACTATTCCA-AGAG 192
                         **** **  *  * ****    * * *  ***    **** * ** * ** * * * 

consensus_6051#0      AGATAGGGAAGTCAAAGCATTAGAAACCTGTGTTTTTTCCAAGTCGGTTTTCGAGGAGAT 289
consensus_6051#1      GTACACGAAAGCCAAGCCATTTCATATTT-CGTACCTCCTTGGCAAGCGT---------- 241
                        * * * *** ***  ****  * *  *  **   * *   *   *  *          

consensus_6051#0      TCTAGGTAAAATCCAGAAATCGGTGGACGAATTAAATCCGCACCAATATTCAAATCTTCC 349
consensus_6051#1      ------------------------------------------------------------
                                                                                  

consensus_6051#0      CCAATGGGTTGCTCGTTTAGATGAAGAAGTTGAACATCGTCTGGTTGCACGCCTTGAGGC 409
consensus_6051#1      ------------------------------------------------------------
                                                                                  

consensus_6051#0      TAGTATTTCTGAATGGACACGTGTTTTATTAGGTCAGAAAGACCAGTTCGATGCAAATGA 469
consensus_6051#1      ------------------------------------------------------------
                                                                                  

consensus_6051#0      TTCGGATGATACTCATTCGACATCACAGTCCAAAAATCGTTTAGGTGGTGAACCGCAAAT 529
consensus_6051#1      ------------------------------------------------------------
                                                                                  

consensus_6051#0      AAAGGCCCTTGTTCATGAACTTAGAATAACCAATCAACAGATTCATCTACATCCTAGTAT 589
consensus_6051#1      ------------------------------------------------------------
                                                                                  

consensus_6051#0      TGAAGTAGCTCGA 602
consensus_6051#1      -------------