cluster # 6064

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Schistosoma mansoni
cluster # 6064 cluster # 6064 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6064#0 length = 637 sequences # 3

consensus_6064#1 length = 576 sequences # 1

consensusID : consensus_6064#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 637
fasta sequence

                              [GCTGCCGCACGTGCTGCACAAGGTGCAGCTAGTCGAACTGGCCCAGGGTTATGGGCACGACATTTTATTAATGTACAGAATTCTAGTGGAGATTCTATGAAATTACCAAATGCTAGACGATCTGCGCCTCATACAGTCGATACTCATAATCCTTATTCAAATCCAGTGAATAATACCCCAGTATTAGTGACAAATCCAATGAAAAATAGTCTACCCGCCGCAGTTTTAGCTTTAGAAGCGATTTGGGCAGATTTAGTTCGACTTATCAATGAATATACAATTGCAGTTGAACCAAGATCTGGTGTGGATGCAGCACGTCAAAGACTGTTTGAGCAATTCATATCTATGCAAACATGTTATGCTACACATATAGCATCATTGATGGATGAAAATCAAAAACTCCTTGAGAAGCTCACGCAAACTCAAGCTCAACTACTACATTGTCAGCCTCAATTACAAGGCTTTGTTACAAATAATAATAATACGTCAATACCAATTATGTCGAATAATGTGCTAATTGCATCATCTCAACCACCACTTCTATCGACAATAACAACTTCATCCACATCAACAAGCTCTACTGGAAATCAGAACCAATTTCACTCTTTTGATATAGAATTAGNATATANGTCTGGGG]

[+] EMBL CD201301             [GCTGCCGCACGTGCTGCACAAGGTGCAGCTAGTCGAACTGGCCCAGGGTTATGGGCACGACATTTTATTAATGTACAGAATTCTAGTGGAGATTCTATGAAATTACCAAATGCTAGACGATCTGCGCCTCATACGGTCGATACTCATAATCCTTATTCAAATCCAGTGAATAATACCCCAGTATTAGTGACAAATCCAATGAAAAATAGTCTACCCGCCGCAGTTTTAGCTTTAGAAGCGATTTGGGCAGATTTAGTTCGACTTATCAATGAATATACAATTGCAGTTGAACCAAGATCTGGTGTGGATGCAGCACGTCAAAGACTGTTTGAGCAATTCATATCTATGCAAACATGTTATGCTACACATATAGCATCATTGATGGATGAAAATCAAAAACTCCTTGAGAAGCTCACGCAAACTCAAGCTCAACTACTACATTGTCAGCCTCAATTACAAGGCTTTGTTACAAATAATAATAATACGTCAATACCAATTATGTCGAATAATGTGCTAATTGCATCATCTCAACCACCACTTCTATCGACAATAACAACTTCATCCACATCAACAAGCTCTACTGGAAATCAGAACCAATTTCACTCTTTTGATATAGAATTAGNATATANGTCTGGGG]
[+] EMBL CD201680             [GCTGCCGCACGTGCTGCACAAGGTGCAGCTAGTCGAACTGGCCCAGGGTTATGGGCACGACATTTTATTAATGTACAGAATTCTAGTGGAGATTCTATGAAATTACCAAATGCTAGACGATCTGCGCCTCATACAGTCGATACTCATAATCCTTATTCAAATCCAGTGAATAATACCCCAGTATTAGTGACAAATCCAATGAAAAATAGTCTACCCGCCGCAGTTTTAGCTTTAGAAGCGATTTGGGCAGATTTAGTTCGACTTATCAGTGAATATACAATT                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD158295             [                                                                  ATTAATGTACAGAATTCTAGTGGAGATTCTAAGAAATTACCAAATGCTAGACGATCTGCGCCTCATACAGTCGATACTCATAATCCTTATTCAAATCCAATGAATAATACCCCAGTATTAGTGACAAATCCAATGAAAAATAGTCTACCCGCCGCAGTTTTAGCTTTAGAAGCGATTTGGGCAGATTTAGTTCGACTTATCAATGAATATACAATTGCAGTTGAATCAAGATCTGGTGTGGATGCAGCACGTCAAAGACTGTTTGAGCAATTCATATCTATGCAAACATGTTATGCTACACATATAGCATCATTGATGGATGANAATCAAAAACTCCTTGAGAAGCTCACGCAAACTCAAGCTCAACTACTACATAGTCAGCCTCAATTACAGGNCTTTGNTACAAAT ATAAa                                                                                                                                                             ]




>consensus_6064#0
GCTGCCGCACGTGCTGCACAAGGTGCAGCTAGTCGAACTGGCCCAGGGTTATGGGCACGA
CATTTTATTAATGTACAGAATTCTAGTGGAGATTCTATGAAATTACCAAATGCTAGACGA
TCTGCGCCTCATACAGTCGATACTCATAATCCTTATTCAAATCCAGTGAATAATACCCCA
GTATTAGTGACAAATCCAATGAAAAATAGTCTACCCGCCGCAGTTTTAGCTTTAGAAGCG
ATTTGGGCAGATTTAGTTCGACTTATCAATGAATATACAATTGCAGTTGAACCAAGATCT
GGTGTGGATGCAGCACGTCAAAGACTGTTTGAGCAATTCATATCTATGCAAACATGTTAT
GCTACACATATAGCATCATTGATGGATGAAAATCAAAAACTCCTTGAGAAGCTCACGCAA
ACTCAAGCTCAACTACTACATTGTCAGCCTCAATTACAAGGCTTTGTTACAAATAATAAT
AATACGTCAATACCAATTATGTCGAATAATGTGCTAATTGCATCATCTCAACCACCACTT
CTATCGACAATAACAACTTCATCCACATCAACAAGCTCTACTGGAAATCAGAACCAATTT
CACTCTTTTGATATAGAATTAGNATATANGTCTGGGG

consensusID : consensus_6064#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence

                              [ATGAAATTACCAAATGCTAGACGATCTGCGCCTCATACAGTCGATACTCATAATCCTTATTCAAATCCAGTAAATAATACCCCAGTATTAGTGACAAATCCAATGAAAAATAGTCTACCCGCCGCAGTTTTAGCTTTAGAAGCGATTTGGGCAGATTTAGTTCGACTTATCAATGAATATACAATTGCAGTTGAATCAAGATCTGGTGTGGATGCAGCACGTCAAAGACTGTTTGAGCAATTCATATCTATGCAAACATGTTATGCTACACATATAGCATCATTGATGGATGAAAATCAAAAACTCCTTGAGGTAATATTTTAATATTGTTTACTACCGTTTTTTAATCATTATACCTGCTCATTAGTAACAATGCGTGCATTCAACCCATTTTACTTTATGTCTCGTATTGACAAAGTAAACAATGTAATCCTGTTAGTAATATCCTTGTGAACGAAGACTTGGTGGAAAAAACAAATTTATTGTTTAATACAAAATTATAGCGTGTTCGTAAAACATGANAATCATACATTANATACATCATTTGCACATCTTCCATCTATTGTCTGTTACAAA]

[+] EMBL CD178850             [ATGAAATTACCAAATGCTAGACGATCTGCGCCTCATACAGTCGATACTCATAATCCTTATTCAAATCCAGTAAATAATACCCCAGTATTAGTGACAAATCCAATGAAAAATAGTCTACCCGCCGCAGTTTTAGCTTTAGAAGCGATTTGGGCAGATTTAGTTCGACTTATCAATGAATATACAATTGCAGTTGAATCAAGATCTGGTGTGGATGCAGCACGTCAAAGACTGTTTGAGCAATTCATATCTATGCAAACATGTTATGCTACACATATAGCATCATTGATGGATGAAAATCAAAAACTCCTTGAGGTAATATTTTAATATTGTTTACTACCGTTTTTTAATCATTATACCTGCTCATTAGTAACAATGCGTGCATTCAACCCATTTTACTTTATGTCTCGTATTGACAAAGTAAACAATGTAATCCTGTTAGTAATATCCTTGTGAACGAAGACTTGGTGGAAAAAACAAATTTATTGTTTAATACAAAATTATAGCGTGTTCGTAAAACATGANAATCATACATTANATACATCATTTGCACATCTTCCATCTATTGTCTGTTACAAA]




>consensus_6064#1
ATGAAATTACCAAATGCTAGACGATCTGCGCCTCATACAGTCGATACTCATAATCCTTAT
TCAAATCCAGTAAATAATACCCCAGTATTAGTGACAAATCCAATGAAAAATAGTCTACCC
GCCGCAGTTTTAGCTTTAGAAGCGATTTGGGCAGATTTAGTTCGACTTATCAATGAATAT
ACAATTGCAGTTGAATCAAGATCTGGTGTGGATGCAGCACGTCAAAGACTGTTTGAGCAA
TTCATATCTATGCAAACATGTTATGCTACACATATAGCATCATTGATGGATGAAAATCAA
AAACTCCTTGAGGTAATATTTTAATATTGTTTACTACCGTTTTTTAATCATTATACCTGC
TCATTAGTAACAATGCGTGCATTCAACCCATTTTACTTTATGTCTCGTATTGACAAAGTA
AACAATGTAATCCTGTTAGTAATATCCTTGTGAACGAAGACTTGGTGGAAAAAACAAATT
TATTGTTTAATACAAAATTATAGCGTGTTCGTAAAACATGANAATCATACATTANATACA
TCATTTGCACATCTTCCATCTATTGTCTGTTACAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6064#0      GCTGCCGCACGTGCTGCACAAGGTGCAGCTAGTCGAACTGGCCCAGGGTTATGGGCACGA 60
consensus_6064#1      ------------------------------------------------------------
                                                                                  

consensus_6064#0      CATTTTATTAATGTACAGAATTCTAGTGGAGATTCTATGAAATTACCAAATGCTAGACGA 120
consensus_6064#1      ------------------------------------ATGAAATTACCAAATGCTAGACGA 24
                                                          ************************

consensus_6064#0      TCTGCGCCTCATACAGTCGATACTCATAATCCTTATTCAAATCCAGTGAATAATACCCCA 180
consensus_6064#1      TCTGCGCCTCATACAGTCGATACTCATAATCCTTATTCAAATCCAGTAAATAATACCCCA 84
                      *********************************************** ************

consensus_6064#0      GTATTAGTGACAAATCCAATGAAAAATAGTCTACCCGCCGCAGTTTTAGCTTTAGAAGCG 240
consensus_6064#1      GTATTAGTGACAAATCCAATGAAAAATAGTCTACCCGCCGCAGTTTTAGCTTTAGAAGCG 144
                      ************************************************************

consensus_6064#0      ATTTGGGCAGATTTAGTTCGACTTATCAATGAATATACAATTGCAGTTGAACCAAGATCT 300
consensus_6064#1      ATTTGGGCAGATTTAGTTCGACTTATCAATGAATATACAATTGCAGTTGAATCAAGATCT 204
                      *************************************************** ********

consensus_6064#0      GGTGTGGATGCAGCACGTCAAAGACTGTTTGAGCAATTCATATCTATGCAAACATGTTAT 360
consensus_6064#1      GGTGTGGATGCAGCACGTCAAAGACTGTTTGAGCAATTCATATCTATGCAAACATGTTAT 264
                      ************************************************************

consensus_6064#0      GCTACACATATAGCATCATTGATGGATGAAAATCAAAAACTCCTTGAGAAGCTCACGCAA 420
consensus_6064#1      GCTACACATATAGCATCATTGATGGATGAAAATCAAAAACTCCTTGAGGTAATATTTTAA 324
                      ************************************************    *     **

consensus_6064#0      ACTCAAGCTCAACTACTACATTGTCAG----------CCTCAATTACAAGGCTTTGTTAC 470
consensus_6064#1      TATTGTTTACTACCGTTTTTTAATCATTATACCTGCTCATTAGTAACAATGCGTGCATTC 384
                        *      * **   *   *  ***           * * * * **** ** *   * *

consensus_6064#0      AAATAATAATAAT--ACGTCA-ATACCAATTATGTCGAATAATGT------GCTAATTGC 521
consensus_6064#1      AACCCATTTTACTTTATGTCTCGTATTGACAAAGT-AAACAATGTAATCCTGTTAGTAAT 443
                      **   **  ** *  * ***   **   *  * **  ** *****      * ** *   

consensus_6064#0      ATCATCTCAACCACCACTTCTATCGACAATAACAACTTCATCCACATCAACAAGCTCTAC 581
consensus_6064#1      ATCCTTGTGAACGAAGACTTGGTGGAAAAAACAAATTTATTGTTTAATACAAAATTATAG 503
                      *** *    * *      *   * ** ** *  ** **  *    *  *  **  * ** 

consensus_6064#0      TGGAAATCAGAACCA---ATTTCACTCTTTTGATATAGAATTAGNATATAN---GTCTGG 635
consensus_6064#1      CGTGTTCGTAAAACATGANAATCATACATTANATACATCATTTGCACATCTTCCATCTAT 563
                       *        ** **      ***  * **  *** *  *** * * **      ***  

consensus_6064#0      GG----------- 637
consensus_6064#1      TGTCTGTTACAAA 576
                       *