These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 476 fasta sequence [GGGTCAGTCTCATTTACAGAACTGCATAGCTTCTCAGTGTAGTCTTCCTGCGTCCAGTGGGGCGCAGACAAATGTTTGCTCGTATTAAAGCGTGATCAGAGTCTAAGCAAGTATTCCAATACGGGTGACAGACTTCTATCGAGCTTCTCCAACGATGACCGATGGCAATATGATCTACTTGAGTTCATCGTTGGTCGGGTGCAGGTGGTGGCCATGTTAGACGATGTCTCTCCTTATGCCTAACATTAGTGCTTGCTAAAAAGAAACGATTGTCTGAGCATAGTTGCTACAGACGATCACCATTATCGGTTCGTTGAGCCGGAATAATAAAATATCCACCTAAATGTCTTTCTGTTTGATTTAAGCTGCCTACTTGGGCATTAAAGTCACCCGCTACGAGTACTATGTCTGAGCGCTTAACTTTTTCGAGAAGTTCAGACAGGCTTTCTGTAAAAGTAATCTTTCACTTCATCATG] [+] EMBL AI975603 [GGGTCAGTCTCATTTACAGAACTGCATAGCTTCTCAGTGTAGTCTTCCTGCGTCCAGTGGGGCGCAGACAAATGTTTGCTCGTATTAAAGCGTGATCAGAGTCTAAGCAAGTATTCCAATACGGGTGACAGACTTCTATCGAGCTTCTCCAACGATGACCGATGGCAATATGATCTACTTGAGTTCATCGTTGGTCGGGTGCAGGTGGTGGCCATGTTAGACGATGTCTCTCCTTATGCCTAACATTAGTGCTTGCTAAAAAGAAACGATTGTCTGAGCATAGTTGCTACAGACGATCACCATTATCGGTTCGTTGAGCCGGAATAATAAAATATCCACCTAAATGTCTTTCTGTTTGATTTAAGCTGCCTACTTGGGCATTAAAGTCACCCGCTACGAGTACTATGTCTGAGCGCTTAACTTTTTCGAGAAGTTCAGACAGGCTTTCTGTAAAAGTAATCTTTCACTTCATCATG] [+] EMBL BF936108 [GGGTCAGTCTCATTTACAGAACTGCATAGCTTCTCAGTGTAGTCTTCCTGCGTCCAGTGGGGCGCAGACAAATGTTTGCTCGTATTAAAGCGTGATCAGAGTCTAAGCAAGTATTCCAATACGGGTGACAGACTTCTATCGAGCTTCTCCAACGATGACCGATGGCAATATGATCTACTTGAGTTCATCGTTGGTCGGGTGCAGGTGGTGGCCATGTTAGACGATGTCTCTCCTTATGCCTAAAATTAGTGCTTGCTAAAAAGAAACGATTGTCTGAGCATAGTTGCAACAGACGATCACCATTATCGGTTCGTTGAGCCGGAATAATAAAATATCCACCTAAATGTCTTTCTGTTTGATTTAAGCTGCCTACTTGGGCATTAAAGTCACCCGCTACGAGTACTATGTCTGAGCGCTTAACTTTTTCGAGAAGTTCAGACAGGCTTTCTGTAAAAGTAATCTTTCACTTCATC ] consensusID : consensus_6069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [GTCTTCTTAGCGTGGTTTTTCTGAGTTCAATGAGGCACAAGCAAATGCATGCTCGTGTTGGAGCGTGATCAGAGTCTAAGCATGTACTCCAGAACGAGAGATAGTCTTCTGTCGAGCCTCTCCAACGATGACTGATGGCAATATGGTCTATTTCAGTCCATCGTTGGTTTGTTGCAGGTGGTCGCCATGTTAGACGATGTCTCTCCTTATGCTTAAAATTAGTGTGTGCTAAAAATAAACGATTGTCTGAACACAGTTGCAATAGACGATCACCATTATCTATTCGCTG] [+] EMBL BG931326 [GTCTTCTTAGCGTGGTTTTTCTGAGTTCAATGAGGCACAAGCAAATGCATGCTCGTGTTGGAGCGTGATCAGAGTCTAAGCATGTACTCCAGAACGAGAGATAGTCTTCTGTCGAGCCTCTCCAACGATGACTGATGGCAATATGGTCTATTTCAGTCCATCGTTGGTTTGTTGCAGGTGGTCGCCATGTTAGACGATGTCTCTCCTTATGCTTAAAATTAGTGTGTGCTAAAAATAAACGATTGTCTGAACACAGTTGCAATAGACGATCACCATTATCTATTCGCTG] consensusID : consensus_6069#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence [CTCTAAACATGTATTCCAGAACTAGCGACAGTCTTCTATTAAGCCTTTCCAATAATGACTGATAGCAATTTGGTCTATTTGAGTCCATCGTTGGTTTGGTTCAAGGGGTCGCCATGTTAAACGATGTCTCTCCTTATGCGTAAAATTAGTGTTTGCTAAAAATAAACGATTGTCTGAGCACAGTTGCAACAGACGATCACCATTATCTGTTCACTGA] [+] EMBL BG931196 [CTCTAAACATGTATTCCAGAACTAGCGACAGTCTTCTATTAAGCCTTTCCAATAATGACTGATAGCAATTTGGTCTATTTGAGTCCATCGTTGGTTTGGTTCAAGGGGTCGCCATGTTAAACGATGTCTCTCCTTATGCGTAAAATTAGTGTTTGCTAAAAATAAACGATTGTCTGAGCACAGTTGCAACAGACGATCACCATTATCTGTTCACTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6069#1 ---------------------------GTCTTCTTAGCGTGGTTTTTCTGAGTTCAATGA 33 consensus_6069#2 ------------------------------------------------------------ consensus_6069#0 GGGTCAGTCTCATTTACAGAACTGCATAGCTTCTCAGTGTAGTCTTCCTGCGTCCAGTGG 60 consensus_6069#1 GGCACAAGCAAATGCATGCTCGTGTTGGAGCGTGATCAGAGTCTAAGCATGTACTCCAGA 93 consensus_6069#2 ----------------------------------------CTCTAAACATGTATTCCAGA 20 consensus_6069#0 GGCGCAGACAAATGTTTGCTCGTATTAAAGCGTGATCAGAGTCTAAGCAAGTATTCCAAT 120 ***** ** *** **** consensus_6069#1 ACGAGAGATAGTCTTCTGTCGAGCCTCTCCAACGATGACTGATGGCAATATGGTCTATTT 153 consensus_6069#2 ACTAGCGACAGTCTTCTATTAAGCCTTTCCAATAATGACTGATAGCAATTTGGTCTATTT 80 consensus_6069#0 ACGGGTGACAGACTTCTATCGAGCTTCTCCAACGATGACCGATGGCAATATGATCTACTT 180 ** * ** ** ***** * *** * ***** ***** *** ***** ** **** ** consensus_6069#1 CAGTCCATCGTTGGTTTGTTGCAGGTGGTCGCCATGTTAGACGATGTCTCTCCTTATGCT 213 consensus_6069#2 GAGTCCATCGTTGGTTTGGTTCAAGGGGTCGCCATGTTAAACGATGTCTCTCCTTATGCG 140 consensus_6069#0 GAGTTCATCGTTGGTCGGGTGCAGGTGGTGGCCATGTTAGACGATGTCTCTCCTTATGCC 240 *** ********** * * ** * *** ********* ******************* consensus_6069#1 TAAAATTAGTGTGTGCTAAAAATAAACGATTGTCTGAACACAGTTGCAATAGACGATCAC 273 consensus_6069#2 TAAAATTAGTGTTTGCTAAAAATAAACGATTGTCTGAGCACAGTTGCAACAGACGATCAC 200 consensus_6069#0 TAACATTAGTGCTTGCTAAAAAGAAACGATTGTCTGAGCATAGTTGCTACAGACGATCAC 300 *** ******* ********* ************** ** ****** * ********** consensus_6069#1 CATTATCTATTCGCTG-------------------------------------------- 289 consensus_6069#2 CATTATCTGTTCACTGA------------------------------------------- 217 consensus_6069#0 CATTATCGGTTCGTTGAGCCGGAATAATAAAATATCCACCTAAATGTCTTTCTGTTTGAT 360 ******* *** ** consensus_6069#1 ------------------------------------------------------------ consensus_6069#2 ------------------------------------------------------------ consensus_6069#0 TTAAGCTGCCTACTTGGGCATTAAAGTCACCCGCTACGAGTACTATGTCTGAGCGCTTAA 420 consensus_6069#1 -------------------------------------------------------- consensus_6069#2 -------------------------------------------------------- consensus_6069#0 CTTTTTCGAGAAGTTCAGACAGGCTTTCTGTAAAAGTAATCTTTCACTTCATCATG 476 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||