cluster # 6070

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Schistosoma mansoni
cluster # 6070 cluster # 6070 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6070#0 length = 815 sequences # 3

consensus_6070#1 length = 291 sequences # 1

consensusID : consensus_6070#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 815
fasta sequence

                              [AAACTAAATGAAGCTATCGAGCATTACACTATGGCCATACGACTTTCACCTGAAGATCCTATCCCATACATAAATCGTGCATTTGCTTATATTAAAACAGAACGTTATGCATCAGCTGAAGCCGATTGCACAGCTGCTTTAAGACTAGACAGAACTTCTGTTAAAGCATTTTATCGGAGAGCACTTGCTCGAAAAGGTCTGGGTCATATTACTGGAGCAATTGAAGATTCAAAGGAATTGCTTAGATTCGATCCAGATAACAAAACTGCCACAAATGAGCTCGAAGCTTTAGTCGGTAAAAAGGAAGTCGCATACATATCTAAATCTCCCGTGTCTTGTAGTTCAATCCAGTCGGGTAATCCAAGGAAAATGAGACGAATACCAATAATTGAAGTTGGTAGTGATAATCATAATAAAAATATACTGAGTACACCTGTACAGAATATTACAAAATCTGTTTGTACTGATGATGATAGTTCCGTCTCAAATAACAGGTATTCTGTTTTGAATAAAGATGAATCANANATGAGAATGTTTCGCATTCAACTCCAAAGATATCAGATAGTTTGGAATCTCGAAATATATCCTCCAGTACGTCAACGCCAATAGTGTCTACTAAT-GAAACGATTAACTGTAAAAGTGATCATAATTTTAAACGACAACCACCATTGTTAAATATGACCTTACATAAACCACCATCAAATTGGTTTCAATTAGAACGTGAACTACGTGAATTATGTCAAAGAAATTCTTCATCCAACTACCGGCCAAATCTTAGCAAAGAAGCAATCATTTATTTGTGTAATATTCAACCA]

[+] EMBL CD121256             [AAACTAAATGAAGCTATCGAGCATTACACTATGGCCATACGACTTTCACCTGAAGATCCTATCCCATACATAAATCGTGCATTTGCTTATATTAAAACAGAACGTTATGCATCAGCTGAAGCCGATTGCACAGCTGCTTTAAGACTAGACAGAACTTCTGTTAAAGCATTTTATCGGAGAGCACTTGCTCGAAAAGGTCTGGGTCATATTACTGGAGCAATTGAAGATTCAAAGGAATTGCTTAGATTCGATCCAGATAACAAAACTGCCACAAATGAGCTCGAAGCTTTAGTCGGTAAAAAGGAAGTCGCATACATATCTAAATCTCCCGTGTCTTGTAGTTCAATCCAGTCGGGTAATCCAAGGAAAATGAGACGAATACCAATAATTGAAGTTGGTAGTGATAATCATAATAAAAATATACTGAGTACACCTGTACAGAATATTACAAAATCTGTTTGTACTGATGATGATAGTTCCGTCTCAAATAACAGGTATTCTGTTTTGAATAAAGATGAATCANANATGAGAATGTTTCGCATTCAACTCCAAAGATATCAGATAGTTTGGAATCTCGAAATATATCCTCCAGTACGTCAACGCC ATAGTGTCTACTAATGGGAACGA TAACTGNTAAAGTGATCATAATTTT AACGAC ACCACC                                                                                                                                                    ]
[-] EMBL CD121189             [                                                                                                      CGTTATGCATCAGCTGAAGCCGATGNCACAGCTGCTTTAAGACTAGACAGAACTTCTGTTANAGCATTTTATCGGAGAGCACTTGCTCGAAAAGGTCTGGGTCATATTACTGGAGCAATTGAAGATTTAAAGGAATTGCTTAGATTCGATCCAGATAACAAAACTGCCACAAATGAGCTCGAAGCTTTAGTCGGTAAAAAGGAAGTCGCATACATATCTAAATCTCCCGTGTCTTGTAGTTCAATCCAGTCGGGTAATCCAAGGAAAATGAGACGAATACCAATAATTGAAGTTGGTAGTGATAATCATAATAAAAATATACTGAGTACACCTGTACAGAATATTACAAAATCTGTTTGTACTGATGATGATAGTTCCGTCTCAAATAACAGGTATTCTGTTTTGAATAAAGATGAATCAAAAATGAGAATGTTTCGCATTCAACTCCAAAGATATCAGATAGTTTGGAATCTCGAAATATATCCTCCAGTACGTCAACGCCAATAGTGTCTACTAAT GAAACGATTAACTGTAAAAGTGATCATAATTTTAAACGACAACCACCAT                                                                                                                                                  ]
[+] EMBL CD063180             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CATTCAACTCCAAAGATATCAGATAGTTTGGAATCTCGAAATATATCCTCCAGTACGTCAACGCCAATAGTGTCTACTAAT GAAACGATTAACTGTAAAAGTGATCATAATTTTAAACGACAACCACCATTGTTAAATATGACCTTACATAAACCACCATCAAATTGGTTTCAATTAGAACGTGAACTACGTGAATTATGTCAAAGAAATTCTTCATCCAACTACCGGCCAAATCTTAGCAAAGAAGCAATCATTTATTTGTGTAATATTCAACCA]




>consensus_6070#0
AAACTAAATGAAGCTATCGAGCATTACACTATGGCCATACGACTTTCACCTGAAGATCCT
ATCCCATACATAAATCGTGCATTTGCTTATATTAAAACAGAACGTTATGCATCAGCTGAA
GCCGATTGCACAGCTGCTTTAAGACTAGACAGAACTTCTGTTAAAGCATTTTATCGGAGA
GCACTTGCTCGAAAAGGTCTGGGTCATATTACTGGAGCAATTGAAGATTCAAAGGAATTG
CTTAGATTCGATCCAGATAACAAAACTGCCACAAATGAGCTCGAAGCTTTAGTCGGTAAA
AAGGAAGTCGCATACATATCTAAATCTCCCGTGTCTTGTAGTTCAATCCAGTCGGGTAAT
CCAAGGAAAATGAGACGAATACCAATAATTGAAGTTGGTAGTGATAATCATAATAAAAAT
ATACTGAGTACACCTGTACAGAATATTACAAAATCTGTTTGTACTGATGATGATAGTTCC
GTCTCAAATAACAGGTATTCTGTTTTGAATAAAGATGAATCANANATGAGAATGTTTCGC
ATTCAACTCCAAAGATATCAGATAGTTTGGAATCTCGAAATATATCCTCCAGTACGTCAA
CGCCAATAGTGTCTACTAATGAAACGATTAACTGTAAAAGTGATCATAATTTTAAACGAC
AACCACCATTGTTAAATATGACCTTACATAAACCACCATCAAATTGGTTTCAATTAGAAC
GTGAACTACGTGAATTATGTCAAAGAAATTCTTCATCCAACTACCGGCCAAATCTTAGCA
AAGAAGCAATCATTTATTTGTGTAATATTCAACCA

consensusID : consensus_6070#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence

                              [GAATTCGGCACGAGGCCTGAAGATCCTATCCCCATACATAAATCGTGCATTTGCTTATATTAAAACAGAACGTTATGCATCAGCTGAAGCCGATTGCACAGCTGCTTTAAGACTAGACAGAACTTCTGTTAAAGCATTTTATCGGAGAGCACTTGCTCGAAAAGGTCTGGGTCATATTACTGGAGCAATTGAAGATTTAAAGGAATTGCTTAGATTCGATCCAGATAACAAAACTGCCACAAATGAGCTCGAAGCTTTAGTCGGTAAAAAGGAAGTCGCATACATATCTAA]

[+] EMBL CD077777             [GAATTCGGCACGAGGCCTGAAGATCCTATCCCCATACATAAATCGTGCATTTGCTTATATTAAAACAGAACGTTATGCATCAGCTGAAGCCGATTGCACAGCTGCTTTAAGACTAGACAGAACTTCTGTTAAAGCATTTTATCGGAGAGCACTTGCTCGAAAAGGTCTGGGTCATATTACTGGAGCAATTGAAGATTTAAAGGAATTGCTTAGATTCGATCCAGATAACAAAACTGCCACAAATGAGCTCGAAGCTTTAGTCGGTAAAAAGGAAGTCGCATACATATCTAA]




>consensus_6070#1
GAATTCGGCACGAGGCCTGAAGATCCTATCCCCATACATAAATCGTGCATTTGCTTATAT
TAAAACAGAACGTTATGCATCAGCTGAAGCCGATTGCACAGCTGCTTTAAGACTAGACAG
AACTTCTGTTAAAGCATTTTATCGGAGAGCACTTGCTCGAAAAGGTCTGGGTCATATTAC
TGGAGCAATTGAAGATTTAAAGGAATTGCTTAGATTCGATCCAGATAACAAAACTGCCAC
AAATGAGCTCGAAGCTTTAGTCGGTAAAAAGGAAGTCGCATACATATCTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6070#0      AAACTAAATGAAGCTATCGAGCATTACACTATGGCCATACGACTTTCA-CCTGAAGATCC 59
consensus_6070#1      ----------------------------------GAATTCGGCACGAGGCCTGAAGATCC 26
                                                          ** ** *      ***********

consensus_6070#0      TATCCC-ATACATAAATCGTGCATTTGCTTATATTAAAACAGAACGTTATGCATCAGCTG 118
consensus_6070#1      TATCCCCATACATAAATCGTGCATTTGCTTATATTAAAACAGAACGTTATGCATCAGCTG 86
                      ****** *****************************************************

consensus_6070#0      AAGCCGATTGCACAGCTGCTTTAAGACTAGACAGAACTTCTGTTAAAGCATTTTATCGGA 178
consensus_6070#1      AAGCCGATTGCACAGCTGCTTTAAGACTAGACAGAACTTCTGTTAAAGCATTTTATCGGA 146
                      ************************************************************

consensus_6070#0      GAGCACTTGCTCGAAAAGGTCTGGGTCATATTACTGGAGCAATTGAAGATTCAAAGGAAT 238
consensus_6070#1      GAGCACTTGCTCGAAAAGGTCTGGGTCATATTACTGGAGCAATTGAAGATTTAAAGGAAT 206
                      *************************************************** ********

consensus_6070#0      TGCTTAGATTCGATCCAGATAACAAAACTGCCACAAATGAGCTCGAAGCTTTAGTCGGTA 298
consensus_6070#1      TGCTTAGATTCGATCCAGATAACAAAACTGCCACAAATGAGCTCGAAGCTTTAGTCGGTA 266
                      ************************************************************

consensus_6070#0      AAAAGGAAGTCGCATACATATCTAAATCTCCCGTGTCTTGTAGTTCAATCCAGTCGGGTA 358
consensus_6070#1      AAAAGGAAGTCGCATACATATCTAA----------------------------------- 291
                      *************************                                   

consensus_6070#0      ATCCAAGGAAAATGAGACGAATACCAATAATTGAAGTTGGTAGTGATAATCATAATAAAA 418
consensus_6070#1      ------------------------------------------------------------
                                                                                  

consensus_6070#0      ATATACTGAGTACACCTGTACAGAATATTACAAAATCTGTTTGTACTGATGATGATAGTT 478
consensus_6070#1      ------------------------------------------------------------
                                                                                  

consensus_6070#0      CCGTCTCAAATAACAGGTATTCTGTTTTGAATAAAGATGAATCANANATGAGAATGTTTC 538
consensus_6070#1      ------------------------------------------------------------
                                                                                  

consensus_6070#0      GCATTCAACTCCAAAGATATCAGATAGTTTGGAATCTCGAAATATATCCTCCAGTACGTC 598
consensus_6070#1      ------------------------------------------------------------
                                                                                  

consensus_6070#0      AACGCCAATAGTGTCTACTAATGAAACGATTAACTGTAAAAGTGATCATAATTTTAAACG 658
consensus_6070#1      ------------------------------------------------------------
                                                                                  

consensus_6070#0      ACAACCACCATTGTTAAATATGACCTTACATAAACCACCATCAAATTGGTTTCAATTAGA 718
consensus_6070#1      ------------------------------------------------------------
                                                                                  

consensus_6070#0      ACGTGAACTACGTGAATTATGTCAAAGAAATTCTTCATCCAACTACCGGCCAAATCTTAG 778
consensus_6070#1      ------------------------------------------------------------
                                                                                  

consensus_6070#0      CAAAGAAGCAATCATTTATTTGTGTAATATTCAACCA 815
consensus_6070#1      -------------------------------------