cluster # 6071

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Schistosoma mansoni
cluster # 6071 cluster # 6071 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6071#0 length = 379 sequences # 1

consensus_6071#1 length = 341 sequences # 3

consensusID : consensus_6071#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [TTTTTTTTTTTTTTTTTTGACCATTTAGGACATATAATTTACACTACTAAAAACAAAATATTAAGACAGATAATAGGACTTTAAAATTGACATAAAAACAGTCATTTGTCATTTGTAGATGACGGTTGACTATTAGAACCTCCAGAGGCACCAACGCTAGTTGAATTATCCCCAAGAACGGTTGCCGCAGTTTGGTCCGGTTTTGCTGATATTTGGGAAATAGGATAAGAAGCACCCGTACTGCATTGAGGCGACTGGTGTGCATGTTGCTGTGACTGTGGATAAGCTGGGACTTGTGAAGGACCAGAATTAGAATAACCAGACCATGAATGAGCACTGTGTTGATGAGGCGTGTCATGTTGGGGTGGAACAGAATCAA]

[+] EMBL AI395115             [TTTTTTTTTTTTTTTTTTGACCATTTAGGACATATAATTTACACTACTAAAAACAAAATATTAAGACAGATAATAGGACTTTAAAATTGACATAAAAACAGTCATTTGTCATTTGTAGATGACGGTTGACTATTAGAACCTCCAGAGGCACCAACGCTAGTTGAATTATCCCCAAGAACGGTTGCCGCAGTTTGGTCCGGTTTTGCTGATATTTGGGAAATAGGATAAGAAGCACCCGTACTGCATTGAGGCGACTGGTGTGCATGTTGCTGTGACTGTGGATAAGCTGGGACTTGTGAAGGACCAGAATTAGAATAACCAGACCATGAATGAGCACTGTGTTGATGAGGCGTGTCATGTTGGGGTGGAACAGAATCAA]




>consensus_6071#0
TTTTTTTTTTTTTTTTTTGACCATTTAGGACATATAATTTACACTACTAAAAACAAAATA
TTAAGACAGATAATAGGACTTTAAAATTGACATAAAAACAGTCATTTGTCATTTGTAGAT
GACGGTTGACTATTAGAACCTCCAGAGGCACCAACGCTAGTTGAATTATCCCCAAGAACG
GTTGCCGCAGTTTGGTCCGGTTTTGCTGATATTTGGGAAATAGGATAAGAAGCACCCGTA
CTGCATTGAGGCGACTGGTGTGCATGTTGCTGTGACTGTGGATAAGCTGGGACTTGTGAA
GGACCAGAATTAGAATAACCAGACCATGAATGAGCACTGTGTTGATGAGGCGTGTCATGT
TGGGGTGGAACAGAATCAA

consensusID : consensus_6071#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 341
fasta sequence

                              [ACAACAGGTGCCTCCAGACTATGTTCAGAGTCAACATCCATCTCATTACATGCCCGGATCCCAGACTGAACCAGTCGTCCCAAATCAACAAACTCTGTCATCTGTTGATAACGTCCATCCGTGCTCTACTATGTCGGTGTCCTCTGCAGATGTTGGCATGGGTCAAATGGTGTCTAACCAGTCTCAAGGAGCCAATATTTATTACCAAGGTTGTCCTGTACCACCATATACCCATGGTAGTAATGTGGGGCCCAGTGGATTTTATTCTGTACCACCACAACATTACACGCCTCATCAACACAGTGGTCATTCTTGGTCTGGTTATTCTAATTCTGGTCCTT]

[+] EMBL CD139454             [ACAACAGGTGCCTCCAGACTATGTTCAGAGTCAACATCCATCTCATTACATGCCCGGATCCCAGACTGAACCAGTCGTCCCAAATCAACAAACTCTGTCATCTGTTGATAACGTCCATCCGTGCTCTACTATGTCGGTGTCCTCTGCAGATGTTGGCATGGGTCAAATGGTGTCTAACCAGTCTCAAGGAGCCAATATTTATTACCAAGGTTGTCCTGTACCACCATATACCCATGGTAGTAATGTGGGGCCCAGTGGATTTTATTCTGTACCACCACAACATTACACGCCTCATCAACACAGTGGTCATTCTTGGTCTGGTTATTCTAATTC        ]
[+] EMBL CD139412             [ACAACAGGTGCCTCCAGACTATGTTCAGAGTCAACATCCATCTCATTACATGCCCGGATCCCAGACTGAACCAGTCGTCCCAAATCAACAAACTCTGTCATCTGTTGATAACGTCCATCCGTGCTCTACTATGTCGGTGTCCTCTGCAGATGTTGGCATGGGTCAAATGGTGTCTAACCAGTCTCAAGGAGCCAATATTTATTACCAAGGTTGTCCTGTACCACCATATACCCATGGTAGTAATGTGGGGCCCAGTGGATTTTATTCTGTACCACCACAACATTACACGCCTCATCAACACAGTGGTCATTCTTGGTCTGGTTATTCTAATTC        ]
[+] EMBL CD171533             [                                                                                                                                                                                                 AATATTTATTACCAAGGTTGTCCTGTACCACCATATACCCATGGTAGTAATGTGGGGCCCAGTGGATTTTATTCTGTACCACCACAACATTACACGCCTCATCAACACAGTGGTCATTCTTGGTCTGGTTATTCTAATTCTGGTCCTT]




>consensus_6071#1
ACAACAGGTGCCTCCAGACTATGTTCAGAGTCAACATCCATCTCATTACATGCCCGGATC
CCAGACTGAACCAGTCGTCCCAAATCAACAAACTCTGTCATCTGTTGATAACGTCCATCC
GTGCTCTACTATGTCGGTGTCCTCTGCAGATGTTGGCATGGGTCAAATGGTGTCTAACCA
GTCTCAAGGAGCCAATATTTATTACCAAGGTTGTCCTGTACCACCATATACCCATGGTAG
TAATGTGGGGCCCAGTGGATTTTATTCTGTACCACCACAACATTACACGCCTCATCAACA
CAGTGGTCATTCTTGGTCTGGTTATTCTAATTCTGGTCCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6071#0      TTTTTTTTTTTTTTTTTTGACCATTTAGGACATATAATTTACACTACTAAAAACAAAATA 60
consensus_6071#1      --------------------ACAACAGGTGCCTCCAGACTATGTTCAGAGTCAACATCCA 40
                                           **    *  * *  *   **   *   *   *  *   *

consensus_6071#0      TTAAGACAGATAATAGGACTTTAAAATTGACATAAAAACAGTCATTTGTCATTTGTAGAT 120
consensus_6071#1      TCTCATTACATGCCCGGATCCCAGACT-------GAACCAGTCGTCCCAAATCAACAAAC 93
                      *      * **    ***    * * *        ** ***** *     **    * * 

consensus_6071#0      GACGGTTGACTATTAG-AACCTCCAGAGGCACCAACGCTAGTTGAATTATCCCCAAGAAC 179
consensus_6071#1      T-CTGTCATCTGTTGATAACGTCCATCCGTGCTC-TACTATGTCGGTGTCCTCTGCAGAT 151
                        * **   ** **   *** ****   *  *     ***  *   *   * *     * 

consensus_6071#0      GGTTGCCGCAGTTTGGTCCGGTTTTGCTGATATTTGGGAAATAGGATAAGAAGCACCCGT 239
consensus_6071#1      GTTGGCATGGGTCAAATGGTGTCTAACCAGTCTCAAGGAGCCA--ATATTTATTACCAAG 209
                      * * **    **    *   ** *  *   * *   ***   *  ***   *  ***   

consensus_6071#0      ACTGCATTGAGGCGACTGGTGTGCATGTTGCTGTGACTGTGGATAAGCTGGGACTTGTGA 299
consensus_6071#1      GTTGTCCTGTACCACC--ATATACCCATGGTAGTAATGTGGGGCCCAGTGGATTTTATTC 267
                        **   **   *  *   * * *   * *  ** *    **      ***   ** *  

consensus_6071#0      AGGACCAGAATTAGAATAACCAGACCATGAATGAGCACTGTGTTGATGAGGCGTGTCATG 359
consensus_6071#1      TGTACCACCACAACATTACACGCCTCATCAACACA-GTGGTCATTCTTGGTCTGGTTATT 326
                       * ****  *  * * **  *    *** **        **  *  *  * *  ** ** 

consensus_6071#0      TTGGGGTGGAACAGAATCAA 379
consensus_6071#1      CTAATTCTGGTCCTT----- 341
                       *      *  *