These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 633 fasta sequence [GGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTATTAAAATTAACTAATATTTACAAGGAAATATTATACATTTTAAAAAGAAAACTTTTACTCCATGTCAATATCTTCTTCACTTCCTGAATCTGATTCACTGCAGGTCAAATCGTCAGCATCAGTCGTTTGGTCTTGAGGTAAACACTGATTAAGATTACAACCAGTTGTTAGCTTGTCTATTTTATCCTGAAGTTCGTGAGTGTTTTTATTTCTAAAAAGAAGAAGTCCTTCGTATATTAGACGTGCAACTTCTTCATGAGAGTTGTCTTCACAAATAATATTTAGTTCATCATCTAAATAATCTTCCAGAAAGTCGCTTATTTCATCCTCATGTTTGGACTTCAAAATAACCTGAGGCAGATGTTCATACAATAATCCAACTTTCTGTTGTGTATTTGGGCCTCCAGACTCCTGATTTAGACCAAGGCGCAAAGCTGTCCATGAATCCAAAATCTTTTTTGTATACAAATTAAACAAGTCCATATGATTTTAGTGTTTAGCTTTTGTAAGGTTTTTGTCCAGCCTGAAAGTATCTTGTGTGATAGAGGAGTATGGGGAGCAGTAGGTTGGATTATCGATCATCA] [+] EMBL AI975347 [GGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTATTAAAATTAACTAATATTTACAAGGAAATATTATACATTTTAAAAAGAAAACTTTTACTCCATGTCAATATCTTCTTCACTTCCTGAATCTGATTCACTGCAGGTCAAATCGTCAGCATCAGTCGTTTGGTCTTGAGGTAAACACTGATTAAGATTACAACCAGTTGTTAGCTTGTCTATTTTATCCTGAAGTTCGTGAGTGTTTTTATTTCTAAAAAGAAGAAGTCCTTCGTATATTAAACGTGCAACTTCTTCATGAGAGTTGTCTTCACAAATAATATTTAGTTCATCATCTAAATAATCT ] [+] EMBL SMAA43858 [ AACTAATATTTACAAGGAAATATTATACATTTTAAAAAGAAAACTTTTACTCCATGTCAATATCTTCTTCACTTCCTGAATCTGATTCACTGCAGGTCAAATCGTCAGCATCAGTCGTTTGGTCTTGAGGTAAACACTGATTAAGATTACAACCAGTTGTTAGCTTGTCTATTTTATCCTGAAGTTCGTGAGTGTTTTTATTTCTAAAAAGAAGAAGTCCTTCGTATATTAGACGTGCAACTTCTTCATGAGAGTTGTCTTCACAAATAATATTTAGTTCATCATCTAAATAATCTTCCAGAAAGTCGCTTATTTCATCCTCATGTTTGGACTTCAAAATAACCTGAGGCAGATGTTCATACAATAATCCAACTTTCTGTTGTGTATTTGGGCCTCCAGACTCCTGATT ] [+] EMBL CD139435 [ CTGATTAAGATTACAACCAGTTGTTAGCTTGTCTATTTTATCCTGAAGTTCGTGAGTGTTTTTATTTCTAAAAGGAAGAAGTCCTTCGTATATTAGACGTGCAACTTCTTCATGAGAGTTGTCTTCACAAATAATATTTAGTTCATCATCTAAATAATCTTCCAGAAAGTCGCTTATTTCATCCTCATGTTTGGACTTCAAAATAACCTGAGGCAGATGTTCATACAATAATCCAACTTTCTGTTGTGTATTTGGGCCTCCAGACTCCTGATTTAGACCAAGGCGCAAAGCTGTCCATGAATCCAAAATCTTTTTTGTATACAAATTAAACAAGTCCATATGATTTTAGTGTTTAGCTTTTGTAAGGTTTTTGTCCAGCCTGAAAGTATCTTGTGTGATAGAGGAGTATGGGGAGCAGTAGGTTGGATTATCGATCATCA] consensusID : consensus_6073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [TAAATAATCTCCCAGAAAGAACGCCTCATTCCATCCCCCATGTGTGGGACTCCAAAATAACCCTGGGGCAGATGTGCATACAATAAACCCAACTTCCTGTTGTGATATATGGGCCCCCCAAACCCCTGTATTTAGACCAAGGCCAAAGCTGTCCCATGAATCCAAAATACTTTTTGGTATACCAAATTAAACAAGTCCATATGATTTTAGTGTTTAGCTTTTGTAAGGTTTTTGTCCAGCCTGAAAGTATCTTGTGTGATAGAGGAGTATGGGGAGCAGTAGGTTCAGATTATCGATAATC] [-] EMBL AW062229 [TAAATAATCTCCCAGAAAGAACGCCTCATTCCATCCCCCATGTGTGGGACTCCAAAATAACCCTGGGGCAGATGTGCATACAATAAACCCAACTTCCTGTTGTGATATATGGGCCCCCCAAACCCCTGTATTTAGACCAAGGCCAAAGCTGTCCCATGAATCCAAAATACTTTTTGGTATACCAAATTAAACAAGTCCATATGATTTTAGTGTTTAGCTTTTGTAAGGTTTTTGTCCAGCCTGAAAGTATCTTGTGTGATAGAGGAGTATGGGGAGCAGTAGGTTCAGATTATCGATAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6073#0 GGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTATTAAAATTAAC 60 consensus_6073#1 ------------------------------------------------------------ consensus_6073#0 TAATATTTACAAGGAAATATTATACATTTTAAAAAGAAAACTTTTACTCCATGTCAATAT 120 consensus_6073#1 ------------------------------------------------------------ consensus_6073#0 CTTCTTCACTTCCTGAATCTGATTCACTGCAGGTCAAATCGTCAGCATCAGTCGTTTGGT 180 consensus_6073#1 ------------------------------------------------------------ consensus_6073#0 CTTGAGGTAAACACTGATTAAGATTACAACCAGTTGTTAGCTTGTCTATTTTATCCTGAA 240 consensus_6073#1 ------------------------------------------------------------ consensus_6073#0 GTTCGTGAGTGTTTTTATTTCTAAAAAGAAGAAGTCCTTCGTATATTAGACGTGCAACTT 300 consensus_6073#1 ------------------------------------------------------------ consensus_6073#0 CTTCATGAGAGTTGTCTTCACAAATAATATTTAGTTCATCATCTAAATAATCTTCCAGAA 360 consensus_6073#1 -------------------------------------------TAAATAATCTCCCAGAA 17 ********** ****** consensus_6073#0 AG--TCGCTTATTTCATCCTC-ATGTTTGG-ACTTCAAAATAACC-TGAGGCAGATGTTC 415 consensus_6073#1 AGAACGCCTCATTCCATCCCCCATGTGTGGGACTCCAAAATAACCCTGGGGCAGATGTGC 77 ** ** *** ***** * **** *** *** ********** ** ********* * consensus_6073#0 ATACAATAA-TCCAACTTTCTGTTGTG-TATTTGGGCCTCC-AGACTCCTG-ATTTAGAC 471 consensus_6073#1 ATACAATAAACCCAACTTCCTGTTGTGATATATGGGCCCCCCAAACCCCTGTATTTAGAC 137 ********* ******* ******** *** ****** ** * ** **** ******** consensus_6073#0 CAAGGCGCAAAGCTGTCC-ATGAATCCAAAAT-CTTTTTTGTATAC-AAATTAAACAAGT 528 consensus_6073#1 CAAGGC-CAAAGCTGTCCCATGAATCCAAAATACTTTTTGGTATACCAAATTAAACAAGT 196 ****** *********** ************* ****** ****** ************* consensus_6073#0 CCATATGATTTTAGTGTTTAGCTTTTGTAAGGTTTTTGTCCAGCCTGAAAGTATCTTGTG 588 consensus_6073#1 CCATATGATTTTAGTGTTTAGCTTTTGTAAGGTTTTTGTCCAGCCTGAAAGTATCTTGTG 256 ************************************************************ consensus_6073#0 TGATAGAGGAGTATGGGGAGCAGTAGGTT-GGATTATCGATCATCA 633 consensus_6073#1 TGATAGAGGAGTATGGGGAGCAGTAGGTTCAGATTATCGATAATC- 301 ***************************** ********** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||