cluster # 6073

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Schistosoma mansoni
cluster # 6073 cluster # 6073 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6073#0 length = 633 sequences # 3

consensus_6073#1 length = 301 sequences # 1

consensusID : consensus_6073#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 633
fasta sequence

                              [GGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTATTAAAATTAACTAATATTTACAAGGAAATATTATACATTTTAAAAAGAAAACTTTTACTCCATGTCAATATCTTCTTCACTTCCTGAATCTGATTCACTGCAGGTCAAATCGTCAGCATCAGTCGTTTGGTCTTGAGGTAAACACTGATTAAGATTACAACCAGTTGTTAGCTTGTCTATTTTATCCTGAAGTTCGTGAGTGTTTTTATTTCTAAAAAGAAGAAGTCCTTCGTATATTAGACGTGCAACTTCTTCATGAGAGTTGTCTTCACAAATAATATTTAGTTCATCATCTAAATAATCTTCCAGAAAGTCGCTTATTTCATCCTCATGTTTGGACTTCAAAATAACCTGAGGCAGATGTTCATACAATAATCCAACTTTCTGTTGTGTATTTGGGCCTCCAGACTCCTGATTTAGACCAAGGCGCAAAGCTGTCCATGAATCCAAAATCTTTTTTGTATACAAATTAAACAAGTCCATATGATTTTAGTGTTTAGCTTTTGTAAGGTTTTTGTCCAGCCTGAAAGTATCTTGTGTGATAGAGGAGTATGGGGAGCAGTAGGTTGGATTATCGATCATCA]

[+] EMBL AI975347             [GGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTATTAAAATTAACTAATATTTACAAGGAAATATTATACATTTTAAAAAGAAAACTTTTACTCCATGTCAATATCTTCTTCACTTCCTGAATCTGATTCACTGCAGGTCAAATCGTCAGCATCAGTCGTTTGGTCTTGAGGTAAACACTGATTAAGATTACAACCAGTTGTTAGCTTGTCTATTTTATCCTGAAGTTCGTGAGTGTTTTTATTTCTAAAAAGAAGAAGTCCTTCGTATATTAAACGTGCAACTTCTTCATGAGAGTTGTCTTCACAAATAATATTTAGTTCATCATCTAAATAATCT                                                                                                                                                                                                                                                                                        ]
[+] EMBL SMAA43858            [                                                         AACTAATATTTACAAGGAAATATTATACATTTTAAAAAGAAAACTTTTACTCCATGTCAATATCTTCTTCACTTCCTGAATCTGATTCACTGCAGGTCAAATCGTCAGCATCAGTCGTTTGGTCTTGAGGTAAACACTGATTAAGATTACAACCAGTTGTTAGCTTGTCTATTTTATCCTGAAGTTCGTGAGTGTTTTTATTTCTAAAAAGAAGAAGTCCTTCGTATATTAGACGTGCAACTTCTTCATGAGAGTTGTCTTCACAAATAATATTTAGTTCATCATCTAAATAATCTTCCAGAAAGTCGCTTATTTCATCCTCATGTTTGGACTTCAAAATAACCTGAGGCAGATGTTCATACAATAATCCAACTTTCTGTTGTGTATTTGGGCCTCCAGACTCCTGATT                                                                                                                                                                       ]
[+] EMBL CD139435             [                                                                                                                                                                                                 CTGATTAAGATTACAACCAGTTGTTAGCTTGTCTATTTTATCCTGAAGTTCGTGAGTGTTTTTATTTCTAAAAGGAAGAAGTCCTTCGTATATTAGACGTGCAACTTCTTCATGAGAGTTGTCTTCACAAATAATATTTAGTTCATCATCTAAATAATCTTCCAGAAAGTCGCTTATTTCATCCTCATGTTTGGACTTCAAAATAACCTGAGGCAGATGTTCATACAATAATCCAACTTTCTGTTGTGTATTTGGGCCTCCAGACTCCTGATTTAGACCAAGGCGCAAAGCTGTCCATGAATCCAAAATCTTTTTTGTATACAAATTAAACAAGTCCATATGATTTTAGTGTTTAGCTTTTGTAAGGTTTTTGTCCAGCCTGAAAGTATCTTGTGTGATAGAGGAGTATGGGGAGCAGTAGGTTGGATTATCGATCATCA]




>consensus_6073#0
GGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTATTAAAATTAAC
TAATATTTACAAGGAAATATTATACATTTTAAAAAGAAAACTTTTACTCCATGTCAATAT
CTTCTTCACTTCCTGAATCTGATTCACTGCAGGTCAAATCGTCAGCATCAGTCGTTTGGT
CTTGAGGTAAACACTGATTAAGATTACAACCAGTTGTTAGCTTGTCTATTTTATCCTGAA
GTTCGTGAGTGTTTTTATTTCTAAAAAGAAGAAGTCCTTCGTATATTAGACGTGCAACTT
CTTCATGAGAGTTGTCTTCACAAATAATATTTAGTTCATCATCTAAATAATCTTCCAGAA
AGTCGCTTATTTCATCCTCATGTTTGGACTTCAAAATAACCTGAGGCAGATGTTCATACA
ATAATCCAACTTTCTGTTGTGTATTTGGGCCTCCAGACTCCTGATTTAGACCAAGGCGCA
AAGCTGTCCATGAATCCAAAATCTTTTTTGTATACAAATTAAACAAGTCCATATGATTTT
AGTGTTTAGCTTTTGTAAGGTTTTTGTCCAGCCTGAAAGTATCTTGTGTGATAGAGGAGT
ATGGGGAGCAGTAGGTTGGATTATCGATCATCA

consensusID : consensus_6073#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence

                              [TAAATAATCTCCCAGAAAGAACGCCTCATTCCATCCCCCATGTGTGGGACTCCAAAATAACCCTGGGGCAGATGTGCATACAATAAACCCAACTTCCTGTTGTGATATATGGGCCCCCCAAACCCCTGTATTTAGACCAAGGCCAAAGCTGTCCCATGAATCCAAAATACTTTTTGGTATACCAAATTAAACAAGTCCATATGATTTTAGTGTTTAGCTTTTGTAAGGTTTTTGTCCAGCCTGAAAGTATCTTGTGTGATAGAGGAGTATGGGGAGCAGTAGGTTCAGATTATCGATAATC]

[-] EMBL AW062229             [TAAATAATCTCCCAGAAAGAACGCCTCATTCCATCCCCCATGTGTGGGACTCCAAAATAACCCTGGGGCAGATGTGCATACAATAAACCCAACTTCCTGTTGTGATATATGGGCCCCCCAAACCCCTGTATTTAGACCAAGGCCAAAGCTGTCCCATGAATCCAAAATACTTTTTGGTATACCAAATTAAACAAGTCCATATGATTTTAGTGTTTAGCTTTTGTAAGGTTTTTGTCCAGCCTGAAAGTATCTTGTGTGATAGAGGAGTATGGGGAGCAGTAGGTTCAGATTATCGATAATC]




>consensus_6073#1
TAAATAATCTCCCAGAAAGAACGCCTCATTCCATCCCCCATGTGTGGGACTCCAAAATAA
CCCTGGGGCAGATGTGCATACAATAAACCCAACTTCCTGTTGTGATATATGGGCCCCCCA
AACCCCTGTATTTAGACCAAGGCCAAAGCTGTCCCATGAATCCAAAATACTTTTTGGTAT
ACCAAATTAAACAAGTCCATATGATTTTAGTGTTTAGCTTTTGTAAGGTTTTTGTCCAGC
CTGAAAGTATCTTGTGTGATAGAGGAGTATGGGGAGCAGTAGGTTCAGATTATCGATAAT
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6073#0      GGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTATTAAAATTAAC 60
consensus_6073#1      ------------------------------------------------------------
                                                                                  

consensus_6073#0      TAATATTTACAAGGAAATATTATACATTTTAAAAAGAAAACTTTTACTCCATGTCAATAT 120
consensus_6073#1      ------------------------------------------------------------
                                                                                  

consensus_6073#0      CTTCTTCACTTCCTGAATCTGATTCACTGCAGGTCAAATCGTCAGCATCAGTCGTTTGGT 180
consensus_6073#1      ------------------------------------------------------------
                                                                                  

consensus_6073#0      CTTGAGGTAAACACTGATTAAGATTACAACCAGTTGTTAGCTTGTCTATTTTATCCTGAA 240
consensus_6073#1      ------------------------------------------------------------
                                                                                  

consensus_6073#0      GTTCGTGAGTGTTTTTATTTCTAAAAAGAAGAAGTCCTTCGTATATTAGACGTGCAACTT 300
consensus_6073#1      ------------------------------------------------------------
                                                                                  

consensus_6073#0      CTTCATGAGAGTTGTCTTCACAAATAATATTTAGTTCATCATCTAAATAATCTTCCAGAA 360
consensus_6073#1      -------------------------------------------TAAATAATCTCCCAGAA 17
                                                                 ********** ******

consensus_6073#0      AG--TCGCTTATTTCATCCTC-ATGTTTGG-ACTTCAAAATAACC-TGAGGCAGATGTTC 415
consensus_6073#1      AGAACGCCTCATTCCATCCCCCATGTGTGGGACTCCAAAATAACCCTGGGGCAGATGTGC 77
                      **     ** *** ***** * **** *** *** ********** ** ********* *

consensus_6073#0      ATACAATAA-TCCAACTTTCTGTTGTG-TATTTGGGCCTCC-AGACTCCTG-ATTTAGAC 471
consensus_6073#1      ATACAATAAACCCAACTTCCTGTTGTGATATATGGGCCCCCCAAACCCCTGTATTTAGAC 137
                      *********  ******* ******** *** ****** ** * ** **** ********

consensus_6073#0      CAAGGCGCAAAGCTGTCC-ATGAATCCAAAAT-CTTTTTTGTATAC-AAATTAAACAAGT 528
consensus_6073#1      CAAGGC-CAAAGCTGTCCCATGAATCCAAAATACTTTTTGGTATACCAAATTAAACAAGT 196
                      ****** *********** ************* ****** ****** *************

consensus_6073#0      CCATATGATTTTAGTGTTTAGCTTTTGTAAGGTTTTTGTCCAGCCTGAAAGTATCTTGTG 588
consensus_6073#1      CCATATGATTTTAGTGTTTAGCTTTTGTAAGGTTTTTGTCCAGCCTGAAAGTATCTTGTG 256
                      ************************************************************

consensus_6073#0      TGATAGAGGAGTATGGGGAGCAGTAGGTT-GGATTATCGATCATCA 633
consensus_6073#1      TGATAGAGGAGTATGGGGAGCAGTAGGTTCAGATTATCGATAATC- 301
                      *****************************  ********** ***