These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6083#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 934 fasta sequence [GCACGTTTGTCTAAGGACACAAAAAATATATGATCGAAAAGCTGCAACACCAAGTATATGGACGATAGTGGTCTTGGCACAACCTTAATACACTTTGTTGGGCGATCGGTAGCATCTCTGGTGCTATGCAGGAAGACGATGAAAGGAGTTTTCTAGTTATTGTAATTCGAGACCTTCTTAGTTTATGTGAACAAAAACGGGGCAAAGATAATAAAGCTATTGTTGCAAGCAATATCATGTACGTTGTTGGTCAATACCCTCGATTTCTGCGCGCACATTGGCGATTCCTAAAAACTGTAATTACAAAGCTTTTTGAATTCATGCACGAAACACATGAAGGTGTGCAAGATATGGCTTGTGATACTTTCATTAAAATTGCTCAGAAATGTCGGCGACAATTAGTAACTGTACAGGTACGTGCATCTTATGAAATATTGATTGCATTATGTAAACACTAAATACATATCATTGTTTGCGTTTCTCTTCCAAAATATGTGGCGTGTATTTTTATAATCGACCAATTTATAAATGAGTTCAGGCGACCATAGGTCAGTAATTGTTACTGGAATCCTTTCATGAAGTTACGAAGCTGAATTTACTTTCTCATTCACGTTTAGTAATTTGACACAGTCAGTAAGTCAGTCAAACTAAGCGTGGTACCTGTTAACTACGTACATCAGTTCAAGTTTCCACATACCATTAGCATGAAGAGGTGAAATTCTTAGGGAAAAGCCCAGAGTAGTAGAGATAATAACAGTTTCAGTGGTATTAAAAAACAGACATACAAGATACGATTCAAGGAAATATAAATTCGTGAAATATTAATATTATGAGGGACTCAAAAGCTTAGAATCTGCGGAAAACAATGAGTGAGTCCATCCGGCTGTTTGACACTATTGGGAATTTCCCTGATAAAATTTCTGATCTTTGGAAT] [+] EMBL CD115554 [GCACGTTTGTCTAAGGACACAAAAAATATATGATCGAAAAGCTGCAACACCAAGTATATGGACGATAGTGGTCTTGGCACAACCTTAATACACTTTGTTGGGCGATCGGTAGCATCTCTGGTGCTATGCAGGAAGACGATGAAAGGAGTTTTCTAGTTATTGTAATTCGAGACCTTCTTAGTTTATGTGAACAAAAACGGGGCAAAGATAATAAAGCTATTGTTGCAAGCAATATCATGTACGTTGTTGGTCAATACCCTCGATTTCTGCGCGCACATTGGCGATTCCTAAAAACTGTAATTACAAAGCTTTTTGAATTCATGCACGAAACACATGAAGGTGTGCAAGATATGGCTTGTGATACTTTCATTAAAATTGCTCAGAAATGTCGGCGACAATTAGTAACTGTACAGGTACGTGCATCTTATGAAATATTGATTGCATTATGTAAACACTAAATACATATCATTGTTTGCGTTTCTCTTCCAAAATATGTGGCGTGTATTTTTATAATCGACCAATTTATAAATGAGTTCAGGCGACCATAGGTCAGTAATTGTTACTGGAATCCTTTCATGAAGT ] [+] EMBL CD115498 [ CTT ATTCACTTTGTTGGGCGATCGGTAGCATCTCTGGTGCTATGCAGGAAGACGATGAAAGGAGTTTTCTAGTTATTGTAATTCGAGACCTTCTTGGTTTATGTGAACAAAAACGGGGCAAAGATAATAAAGCTATTGTTGCAAGCAATATCATGTACGTTGTTGGTCAATACCCTCGATTTCTGCGCGCACATTGGCGATTCCTAAAAACTGTAATTACAAAGCTTTTTGAATTCATGCACGAAACACATGAAGGTGTGCAAGATATGGCTTGTGATACTTTCATTAAAATTGCTCAGAAATGTCGGCGACAATTAGTAACTGTACAGGTACGTGCATCTTATGAAATATTGATTGCATTATGTAAACACTAAATACATATCATTGTTTGCGTTTCTCTTCCAAAATATGTGGCGTGTATTTTTATAATCGACCAATTTATAAATGAGTTCAGGCGAC ] [-] EMBL CD115307 [ TATCATTGTTTGCGTATCTCTTCCAAAATATGTGGCGTGTATTTTTATAATCGACCAATTTATAAATGAGTTCAGGCGACCATAGGTCAGTAATTGTTACTGGAATCCTTTCATGAAGTTACGAAGCTGAATTTACTTTCTCATTCACGTTTAGTAATTTGACACAGTCAGTAAGTCAGTCAAACTAAGCGTGGTACCTGTTAACTACGTACATCAGTTCAAGTTTCCACATACCATTAGCATGAAGAGGTGAAATTCTTAGGGAAAAGCCCAGAGTAGTAGAGATAATAACAGTTTCAGTGGTATTAAAAAACAGACATACAAGATACGATTCAAGGAAATATAAATTCGTGAAATATTAATATTATGAGGGACTCAAAAGCTTAGAATCTGCGGAAAACAATGAGTGAGTCCATCCGGCTGTTTGACACTATTGGGAATTTCCCTGATAAAATTTCTGATCTTTGGAAT] consensusID : consensus_6083#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [GGAAGACGATGAAAGGAGTTTTCTAGTTATTGTAATTCGAGACCTTCTTGGTTTATGTGAACAAAAACGGGGCAAAGATAATAAAGCTATTGTTGCAAGCAATATCATGTACGTTGTTGGTCAATACCCTCGATTTCTGCGCGCACATTGGCGATTCCTAAAAACTGTAATTACAAAGCTTTTTGAATTCATGCACGAAACACATGAAGGTGTGCAAGATATGGCTTGTGATACTTTCATTAAAATTGCTCAGAAATGTCGGCGACAATTAGTAACTGTACAGTACGGAGAAGCAGTTGAATTTATTGAAGAGATTTTAAAGGAAATTGATATCATAATCAATGACTTACAACCTCAACAGGTTCACACATTTTATGAAGCTGTAGG] [-] EMBL CD187187 [GGAAGACGATGAAAGGAGTTTTCTAGTTATTGTAATTCGAGACCTTCTTGGTTTATGTGAACAAAAACGGGGCAAAGATAATAAAGCTATTGTTGCAAGCAATATCATGTACGTTGTTGGTCAATACCCTCGATTTCTGCGCGCACATTGGCGATTCCTAAAAACTGTAATTACAAAGCTTTTTGAATTCATGCACGAAACACATGAAGGTGTGCAAGATATGGCTTGTGATACTTTCATTAAAATTGCTCAGAAATGTCGGCGACAATTAGTAACTGTACAGTACGGAGAAGCAGTTGAATTTATTGAAGAGATTTTAAAGGAAATTGATATCATAATCAATGACTTACAACCTCAACAGGTTCACACATTTTATGAAGCTGTAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6083#0 GCACGTTTGTCTAAGGACACAAAAAATATATGATCGAAAAGCTGCAACACCAAGTATATG 60 consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 GACGATAGTGGTCTTGGCACAACCTTAATACACTTTGTTGGGCGATCGGTAGCATCTCTG 120 consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 GTGCTATGCAGGAAGACGATGAAAGGAGTTTTCTAGTTATTGTAATTCGAGACCTTCTTA 180 consensus_6083#1 ----------GGAAGACGATGAAAGGAGTTTTCTAGTTATTGTAATTCGAGACCTTCTTG 50 ************************************************* consensus_6083#0 GTTTATGTGAACAAAAACGGGGCAAAGATAATAAAGCTATTGTTGCAAGCAATATCATGT 240 consensus_6083#1 GTTTATGTGAACAAAAACGGGGCAAAGATAATAAAGCTATTGTTGCAAGCAATATCATGT 110 ************************************************************ consensus_6083#0 ACGTTGTTGGTCAATACCCTCGATTTCTGCGCGCACATTGGCGATTCCTAAAAACTGTAA 300 consensus_6083#1 ACGTTGTTGGTCAATACCCTCGATTTCTGCGCGCACATTGGCGATTCCTAAAAACTGTAA 170 ************************************************************ consensus_6083#0 TTACAAAGCTTTTTGAATTCATGCACGAAACACATGAAGGTGTGCAAGATATGGCTTGTG 360 consensus_6083#1 TTACAAAGCTTTTTGAATTCATGCACGAAACACATGAAGGTGTGCAAGATATGGCTTGTG 230 ************************************************************ consensus_6083#0 ATACTTTCATTAAAATTGCTCAGAAATGTCGGCGACAATTAGTAACTGTACAGGTACGTG 420 consensus_6083#1 ATACTTTCATTAAAATTGCTCAGAAATGTCGGCGACAATTAGTAACTGTACAG-TACGGA 289 ***************************************************** **** consensus_6083#0 CATCTTATGAAATATTGATTGCATTATGTAAACACTAAATACATATCATTGTTTGCGTTT 480 consensus_6083#1 GAAGCAGTTGAATTT--ATTGAAGAGATTTTAAAGGAAATTGATATCATAATCAATGACT 347 * * *** * **** * * * * **** ******* * * * consensus_6083#0 CTCTTCCAAAATATGTGGCGTGTATTTTTATAATCGACCAATTTATAAATGAGTTCAGGC 540 consensus_6083#1 TACAACCTCAACAGGTT-CACACATTTTATGAAGCTGTAGG------------------- 387 * ** ** * ** * ***** ** * consensus_6083#0 GACCATAGGTCAGTAATTGTTACTGGAATCCTTTCATGAAGTTACGAAGCTGAATTTACT 600 consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 TTCTCATTCACGTTTAGTAATTTGACACAGTCAGTAAGTCAGTCAAACTAAGCGTGGTAC 660 consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 CTGTTAACTACGTACATCAGTTCAAGTTTCCACATACCATTAGCATGAAGAGGTGAAATT 720 consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 CTTAGGGAAAAGCCCAGAGTAGTAGAGATAATAACAGTTTCAGTGGTATTAAAAAACAGA 780 consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 CATACAAGATACGATTCAAGGAAATATAAATTCGTGAAATATTAATATTATGAGGGACTC 840 consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 AAAAGCTTAGAATCTGCGGAAAACAATGAGTGAGTCCATCCGGCTGTTTGACACTATTGG 900 consensus_6083#1 ------------------------------------------------------------ consensus_6083#0 GAATTTCCCTGATAAAATTTCTGATCTTTGGAAT 934 consensus_6083#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||