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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 845 fasta sequence
[AATAATAATAATAATAGTAATACTGATAATGTGGTTGATGCTGGTGGTAATCCGAGTAATCTAATTAAGAGATCATGTGACCAAATAGCAGAAAAGCATTCTGTGCACAAATCACCCGATAATTGTAATGATCATGTCAATTCTGATGATGATGATGATGGAAATACTCAATCGACTGTTGTCACACAATCAATATGTGATCATTCTACATCTTTTGAAGGGCAAATCTACCTAACCGATACAATGAAAAATTTACAAAAGCAGCTTTACACAGTTAAAAATGAATTAGATTTGAAAAACCACGCTTTGAAAGTTGCTACAAATCGTCAGTTAGAGTTGGAAAATACCCTTAAAACTCAAGTTTCTGAACAAACATCTAAAATAGAGAAAATTAGTACAATTTCTAATCAGTTGGGTCAACGATTAGATGATTTGATGTTAAATTACAAATCTTATCGTGAAACAACTGAAAAAGAAATATCCACTTTATTAGTTGAGCGCANAATTGCTAGTTCAAATCTAGAAATTCTTCGTTCACATTATGATGCACTCGTTGGTAGACGTTCACAAGCTGCTATTGAATTAAGTAGAC-AACCAATACAATTACCAAATGAAAAAGATGAATTAGAACATGTGGCGTTAAAATTATATGAAGAAAACCTATCATTTCGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACTCACAGAGTACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACGTGCCAT]
[+] EMBL CD154115 [AATAATAATAATAATAGTAATACTGATAATGTGGTTGATGCTGGTGGTAATCCGAGTAATCTAATTAAGAGATCATGTGACCAAATAGCAGAAAAGCATTCTGTGCACAAATCACCCGATAATTGTAATGATCATGTCAATTCTGATGATGATGATGATGGAAATACTCAATCGACTGTTGTCACACAATCAATATGTGATCATTCTACATCTTTTGAAGGGCAAATCTACCTAACCGATACAATGAAAAATTTACAAAAGCAGCTTTACACAGTTAAAAATGAATTAGATTTGAAAAACCACGCTTTGAAAGTTGCTACAAATCGTCAGTTAGAGTTGGAAAATACCCTTAAAACTCAAGTTTCTGAACAAACATCTAAAATAGAGAAAATTAGTACAATTTCTAATCAGTTGGGTCAACGATTAGATGATTTGATGTTAAATTACAAATCTTATCGTGAAACAACTGAAAAAGAAATATCCACTTTATTAGTTGAGCGCANAATTGCTAGTTCAAATCTAGAAATTCTTCGTTCACATTATGATGCACTCGTTGGTAGACGTTCACAAGCTGCTATTGAATTAAGTAGACAAACCAATAC ATTACCANATGA ]
[-] EMBL CD115467 [ TCGTCAGTTAGAGTTGGAAAATACCCTTAAAACTCAAGTTTCTGAACAAACATCTAAAATAGAGAAAATTAGTACAATTTCTAATCAGTTGGGTCAACGATTAGATGATTTGATGTTAAATTACAAATCTTATCGGGAAACAACTGAAAAAGAAATATCCACCTTATTAGTTGAGCGCAAAATTGCTAGTTCAAATCTAGAAATTCTTCGTTCACATTATGATGCACTCGTTGGTAGACGTTCACAAGCTGCTATTGAATTAAGTAGAC AACCAATACAATTACCAAATGAAAAAGATGAATTAGAACATGTGGCGTTAAAATTATATGAAGAAAACCTATCATTTCGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACTCACAGAGTACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACGTGCCAT]
[+] EMBL CD130750 [ GATGCACTCGTTGGTAGACGTTCACAAGCTACTATTGAATTAAGTAGAC AACCAATACAATTACCAAATGAAAAAGATGAATTAGAACATTTGGCGTTAAAATTATATGAAGAAAACCTATCATTTCGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACTCACAGAGAACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTA ]
consensusID : consensus_6086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[GACGAAACGACTGCTCAATGGTCTTAGTTTCTTAATGTTTGTTTAACTGAGGCATTTTTTGATCTCAATAGAATTCAATGGCTTCCATGATCCCCATACTGATAAACAGATTAATCTTTGTTTCAATTAAAGTACTATGATCAATACAATTTGATCATTTGAATTAATGCTAATATACATCACTGGAAAATTTATTTATATACATTTAAATGTACACATATTGTCAGTGTCTTTCATTTTCACAATAAAGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACTCACAGAGAACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACGTGATAATGAAACTGTTCTAAGACAGANATGTGAAGATGAATTANAAATTTCCAAATCTAAGTTGAATGAACTACAGGCTAAATATGAACTAACTGAAACTAATTTAACTGAAGCTCAGAAAAGATTATTGATCTGCAAGATCAAGTTATTCGGTTGCAAAATGATTTAGACAATGTGGAATCGGGTCAAGCTGATTTTTGTCGTTTGTCACAAAATTTACAAGTTCAACTGGGAAGATTANG]
[+] EMBL CD130722 [GACGAAACGACTGCTCAATGGTCTTAGTTTCTTAATGTTTGTTTAACTGAGGCATTTTTTGATCTCAATAGAATTCAATGGCTTCCATGATCCCCATACTGATAAACAGATTAATCTTTGTTTCAATTAAAGTACTATGATCAATACAATTTGATCATTTGAATTAATGCTAATATACATCACTGGAAAATTTATTTATATACATTTAAATGTACACATATTGTCAGTGTCTTTCATTTTCACAATAAAGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACTCACAGAGAACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACGTGATAATGAAACTGTTCTAAGACAGANATGTGAAGATGAATTANAAATTTCCAAATCTAAGTTGAATGAACTACAGGCTAAATATGAACTAACTGAAACTAATTTAACTGAAGCTCAGAAAAGATTATTGATCTGCAAGATCAAGTTATTCGGTTGCAAAATGATTTAGACAATGTGGAATCGGGTCAAGCTGATTTTTGTCGTTTGTCACAAAATTTACAAGTTCAACTGGGAAGATTANG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6086#0 AATAATAATAATAATAGTAATACTGATAATGTGGTTGATGCTGGTGGTAATCCGAGTAAT 60
consensus_6086#1 ---------------------------GACGAAACGACTGCT--CAATGGTCTTAGTTTC 31
* * **** * ** ***
consensus_6086#0 CTAATTAAGAGATCATGTGACCAAATAGCAGAAAAGCATTCTGTGCACAAATCACCCGAT 120
consensus_6086#1 TTAAT-----GTTTGTTTAACTGAG----------GCATTTTTTG-----ATCTCAATAG 71
**** * * * * ** * ***** * ** *** * *
consensus_6086#0 AATTGTAATGATCATGTCAATTCTGATGATGATGATGATGGAAATACTCAAT-CGACTGT 179
consensus_6086#1 AATT-CAATGGCTTCCATGATCCCCATACTGATAAACAGATTAATCTTTGTTTCAATTAA 130
**** **** ** * ** **** * * *** * * * * *
consensus_6086#0 TGTCACACAATCAATATGTGATCATTCTACATCTTTTGAAGGGCAAATCTACCTAACCGA 239
consensus_6086#1 AGTACTATGATCAATACAATTTGAT----CATTTGAATTAATGCTAATATACATCACTGG 186
** * ******* * ** *** * * ** *** *** * ** *
consensus_6086#0 TACAATGAAAAATTTACAAAAGCAGCTTTACACAGTTAAAAATGAATTAGATTTGAAAAA 299
consensus_6086#1 AAAATTTATTTATATACATTTAAATGTACACATA-TTGTCAGTGTCTTTCATTTTCACAA 245
* * * * ** **** * * *** * ** * ** ** **** * **
consensus_6086#0 CCACGCTTTGAAAGTTGCTACAAATCGTCAGTTAGAGTTGGAAAATACCCTTAAAACTCA 359
consensus_6086#1 TAAAG---TGAAGCACGTGATCATTTAG-AGGAATGCTTAAAGAAGGAGACTGAAACTCA 301
* * **** * * * * ** * ** * ** * *******
consensus_6086#0 AGTTTCTGAACAAACATCTAAAATAGAGAAAATTAGTACAATTTCTAATCAGTTGGGTCA 419
consensus_6086#1 CAG---AGAACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCT 358
***** * * ** * * ** *** * ** * * ** **
consensus_6086#0 ACGA---TTAGATGA--TTTGATGTTAAATTACAAATCTTATCG-TGAAACAACTGAAAA 473
consensus_6086#1 ACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACG 418
**** ** ** ** * * ** * ** ** ** * *********
consensus_6086#0 AGAAATATCCACTTTATTAGTTGAGCGCANAATTGCTAGTTCAAATCTAGAAATTCTTCG 533
consensus_6086#1 TGATA-----ATGAAACTGTTCTAAGACAGANATGTGAAGATGAAT-TANAAATTTCCAA 472
** * * * * * * ** * ** * *** ** *****
consensus_6086#0 TTCACATTATGATGCACTCGTTGGTAGACGTTCACAAGCTGCTATTGAATTAAGTAGACA 593
consensus_6086#1 ATCTAAGTTGAATGAACTACAGGCTAAATATGAACTAACTGAAACTAATTTAACTGAAGC 532
** * * *** *** * ** * * ** * *** * * * **** * *
consensus_6086#0 ACCAATACAATTACCAAATGAAAAAGATGAATTAGAACATGTGGCGTTAAAATTATATGA 653
consensus_6086#1 TCAGAAAAGATTATTGATCTGCAAGATCAAGTTA-----TTCGGTTGCAAAATGATTT-- 585
* * * **** * ** * *** * ** ***** ** *
consensus_6086#0 AGAAAACCTATCATTTCGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGAC 713
consensus_6086#1 AGACAATGTGGAATCGGGTCAAGC---TGATTTTTGTCGTTTGTCACAAAATTTACAAGT 642
*** ** * ** ** **** **** ** * *** *
consensus_6086#0 TGAAACTCACAGAGTACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTC 773
consensus_6086#1 TCAACTGGGAAGATTANG------------------------------------------ 660
* ** *** **
consensus_6086#0 AATTCTACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAAC 833
consensus_6086#1 ------------------------------------------------------------
consensus_6086#0 TGAACGTGCCAT 845
consensus_6086#1 ------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||