These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6086#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 845 fasta sequence [AATAATAATAATAATAGTAATACTGATAATGTGGTTGATGCTGGTGGTAATCCGAGTAATCTAATTAAGAGATCATGTGACCAAATAGCAGAAAAGCATTCTGTGCACAAATCACCCGATAATTGTAATGATCATGTCAATTCTGATGATGATGATGATGGAAATACTCAATCGACTGTTGTCACACAATCAATATGTGATCATTCTACATCTTTTGAAGGGCAAATCTACCTAACCGATACAATGAAAAATTTACAAAAGCAGCTTTACACAGTTAAAAATGAATTAGATTTGAAAAACCACGCTTTGAAAGTTGCTACAAATCGTCAGTTAGAGTTGGAAAATACCCTTAAAACTCAAGTTTCTGAACAAACATCTAAAATAGAGAAAATTAGTACAATTTCTAATCAGTTGGGTCAACGATTAGATGATTTGATGTTAAATTACAAATCTTATCGTGAAACAACTGAAAAAGAAATATCCACTTTATTAGTTGAGCGCANAATTGCTAGTTCAAATCTAGAAATTCTTCGTTCACATTATGATGCACTCGTTGGTAGACGTTCACAAGCTGCTATTGAATTAAGTAGAC-AACCAATACAATTACCAAATGAAAAAGATGAATTAGAACATGTGGCGTTAAAATTATATGAAGAAAACCTATCATTTCGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACTCACAGAGTACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACGTGCCAT] [+] EMBL CD154115 [AATAATAATAATAATAGTAATACTGATAATGTGGTTGATGCTGGTGGTAATCCGAGTAATCTAATTAAGAGATCATGTGACCAAATAGCAGAAAAGCATTCTGTGCACAAATCACCCGATAATTGTAATGATCATGTCAATTCTGATGATGATGATGATGGAAATACTCAATCGACTGTTGTCACACAATCAATATGTGATCATTCTACATCTTTTGAAGGGCAAATCTACCTAACCGATACAATGAAAAATTTACAAAAGCAGCTTTACACAGTTAAAAATGAATTAGATTTGAAAAACCACGCTTTGAAAGTTGCTACAAATCGTCAGTTAGAGTTGGAAAATACCCTTAAAACTCAAGTTTCTGAACAAACATCTAAAATAGAGAAAATTAGTACAATTTCTAATCAGTTGGGTCAACGATTAGATGATTTGATGTTAAATTACAAATCTTATCGTGAAACAACTGAAAAAGAAATATCCACTTTATTAGTTGAGCGCANAATTGCTAGTTCAAATCTAGAAATTCTTCGTTCACATTATGATGCACTCGTTGGTAGACGTTCACAAGCTGCTATTGAATTAAGTAGACAAACCAATAC ATTACCANATGA ] [-] EMBL CD115467 [ TCGTCAGTTAGAGTTGGAAAATACCCTTAAAACTCAAGTTTCTGAACAAACATCTAAAATAGAGAAAATTAGTACAATTTCTAATCAGTTGGGTCAACGATTAGATGATTTGATGTTAAATTACAAATCTTATCGGGAAACAACTGAAAAAGAAATATCCACCTTATTAGTTGAGCGCAAAATTGCTAGTTCAAATCTAGAAATTCTTCGTTCACATTATGATGCACTCGTTGGTAGACGTTCACAAGCTGCTATTGAATTAAGTAGAC AACCAATACAATTACCAAATGAAAAAGATGAATTAGAACATGTGGCGTTAAAATTATATGAAGAAAACCTATCATTTCGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACTCACAGAGTACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACGTGCCAT] [+] EMBL CD130750 [ GATGCACTCGTTGGTAGACGTTCACAAGCTACTATTGAATTAAGTAGAC AACCAATACAATTACCAAATGAAAAAGATGAATTAGAACATTTGGCGTTAAAATTATATGAAGAAAACCTATCATTTCGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACTCACAGAGAACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTA ] consensusID : consensus_6086#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [GACGAAACGACTGCTCAATGGTCTTAGTTTCTTAATGTTTGTTTAACTGAGGCATTTTTTGATCTCAATAGAATTCAATGGCTTCCATGATCCCCATACTGATAAACAGATTAATCTTTGTTTCAATTAAAGTACTATGATCAATACAATTTGATCATTTGAATTAATGCTAATATACATCACTGGAAAATTTATTTATATACATTTAAATGTACACATATTGTCAGTGTCTTTCATTTTCACAATAAAGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACTCACAGAGAACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACGTGATAATGAAACTGTTCTAAGACAGANATGTGAAGATGAATTANAAATTTCCAAATCTAAGTTGAATGAACTACAGGCTAAATATGAACTAACTGAAACTAATTTAACTGAAGCTCAGAAAAGATTATTGATCTGCAAGATCAAGTTATTCGGTTGCAAAATGATTTAGACAATGTGGAATCGGGTCAAGCTGATTTTTGTCGTTTGTCACAAAATTTACAAGTTCAACTGGGAAGATTANG] [+] EMBL CD130722 [GACGAAACGACTGCTCAATGGTCTTAGTTTCTTAATGTTTGTTTAACTGAGGCATTTTTTGATCTCAATAGAATTCAATGGCTTCCATGATCCCCATACTGATAAACAGATTAATCTTTGTTTCAATTAAAGTACTATGATCAATACAATTTGATCATTTGAATTAATGCTAATATACATCACTGGAAAATTTATTTATATACATTTAAATGTACACATATTGTCAGTGTCTTTCATTTTCACAATAAAGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGACTGAAACTCACAGAGAACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCTACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACGTGATAATGAAACTGTTCTAAGACAGANATGTGAAGATGAATTANAAATTTCCAAATCTAAGTTGAATGAACTACAGGCTAAATATGAACTAACTGAAACTAATTTAACTGAAGCTCAGAAAAGATTATTGATCTGCAAGATCAAGTTATTCGGTTGCAAAATGATTTAGACAATGTGGAATCGGGTCAAGCTGATTTTTGTCGTTTGTCACAAAATTTACAAGTTCAACTGGGAAGATTANG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6086#0 AATAATAATAATAATAGTAATACTGATAATGTGGTTGATGCTGGTGGTAATCCGAGTAAT 60 consensus_6086#1 ---------------------------GACGAAACGACTGCT--CAATGGTCTTAGTTTC 31 * * **** * ** *** consensus_6086#0 CTAATTAAGAGATCATGTGACCAAATAGCAGAAAAGCATTCTGTGCACAAATCACCCGAT 120 consensus_6086#1 TTAAT-----GTTTGTTTAACTGAG----------GCATTTTTTG-----ATCTCAATAG 71 **** * * * * ** * ***** * ** *** * * consensus_6086#0 AATTGTAATGATCATGTCAATTCTGATGATGATGATGATGGAAATACTCAAT-CGACTGT 179 consensus_6086#1 AATT-CAATGGCTTCCATGATCCCCATACTGATAAACAGATTAATCTTTGTTTCAATTAA 130 **** **** ** * ** **** * * *** * * * * * consensus_6086#0 TGTCACACAATCAATATGTGATCATTCTACATCTTTTGAAGGGCAAATCTACCTAACCGA 239 consensus_6086#1 AGTACTATGATCAATACAATTTGAT----CATTTGAATTAATGCTAATATACATCACTGG 186 ** * ******* * ** *** * * ** *** *** * ** * consensus_6086#0 TACAATGAAAAATTTACAAAAGCAGCTTTACACAGTTAAAAATGAATTAGATTTGAAAAA 299 consensus_6086#1 AAAATTTATTTATATACATTTAAATGTACACATA-TTGTCAGTGTCTTTCATTTTCACAA 245 * * * * ** **** * * *** * ** * ** ** **** * ** consensus_6086#0 CCACGCTTTGAAAGTTGCTACAAATCGTCAGTTAGAGTTGGAAAATACCCTTAAAACTCA 359 consensus_6086#1 TAAAG---TGAAGCACGTGATCATTTAG-AGGAATGCTTAAAGAAGGAGACTGAAACTCA 301 * * **** * * * * ** * ** * ** * ******* consensus_6086#0 AGTTTCTGAACAAACATCTAAAATAGAGAAAATTAGTACAATTTCTAATCAGTTGGGTCA 419 consensus_6086#1 CAG---AGAACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTCAATTCT 358 ***** * * ** * * ** *** * ** * * ** ** consensus_6086#0 ACGA---TTAGATGA--TTTGATGTTAAATTACAAATCTTATCG-TGAAACAACTGAAAA 473 consensus_6086#1 ACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAACTGAACG 418 **** ** ** ** * * ** * ** ** ** * ********* consensus_6086#0 AGAAATATCCACTTTATTAGTTGAGCGCANAATTGCTAGTTCAAATCTAGAAATTCTTCG 533 consensus_6086#1 TGATA-----ATGAAACTGTTCTAAGACAGANATGTGAAGATGAAT-TANAAATTTCCAA 472 ** * * * * * * ** * ** * *** ** ***** consensus_6086#0 TTCACATTATGATGCACTCGTTGGTAGACGTTCACAAGCTGCTATTGAATTAAGTAGACA 593 consensus_6086#1 ATCTAAGTTGAATGAACTACAGGCTAAATATGAACTAACTGAAACTAATTTAACTGAAGC 532 ** * * *** *** * ** * * ** * *** * * * **** * * consensus_6086#0 ACCAATACAATTACCAAATGAAAAAGATGAATTAGAACATGTGGCGTTAAAATTATATGA 653 consensus_6086#1 TCAGAAAAGATTATTGATCTGCAAGATCAAGTTA-----TTCGGTTGCAAAATGATTT-- 585 * * * **** * ** * *** * ** ***** ** * consensus_6086#0 AGAAAACCTATCATTTCGTGAAGCACGTGATCATTTAGAGGAATGCTTAAAGAAGGAGAC 713 consensus_6086#1 AGACAATGTGGAATCGGGTCAAGC---TGATTTTTGTCGTTTGTCACAAAATTTACAAGT 642 *** ** * ** ** **** **** ** * *** * consensus_6086#0 TGAAACTCACAGAGTACAGCTAGCAAATGAACAACAAGAGCGTATTAATTTTGAATCGTC 773 consensus_6086#1 TCAACTGGGAAGATTANG------------------------------------------ 660 * ** *** ** consensus_6086#0 AATTCTACGAGAATTGGAAGAAGCACGTAGACGTCTTGCTGATTTTGTCAATATTACAAC 833 consensus_6086#1 ------------------------------------------------------------ consensus_6086#0 TGAACGTGCCAT 845 consensus_6086#1 ------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||