cluster # 6089

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Schistosoma mansoni
cluster # 6089 cluster # 6089 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6089#0 length = 1089 sequences # 3

consensus_6089#1 length = 271 sequences # 1

consensusID : consensus_6089#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1089
fasta sequence

                              [TTCCCGTTCTAACGTTGATCTCGATGCTAGACGACCTCCGGCTCATGGGGATAGGGACAGATGTATCCATACTCGTCTCAGTTTCCGAGACCGCGCAAATGTGCCAGCCCCCTACGTCCCCCGACCCAGGTCACAATCTCGAAAAGCCGTAACGACTCGCCCCAAGCGGGCATCTTCCAAGCCACGCCAGAAGGCGGTTTCGGAAGCGAGTCCAGGTTGGTGCTGGTTTCACCGTGCTTTCGGAGCCGGTGCCCGTCATTGTCGAGCTCCCTGCTCATACAAGGCGGGAAACTTCTCAGCCGGCGAGTAAATGCGGCCGTACTCGCCGGCACTTCACCTCAGGTTGGCCGTTTATTTTACGTGCACGATTATCGCACCAACGCTAGGTACCTTGTGGATACGGGTGCCCAAGTTTCTGTCGTACCTATCGGTAACAGTAAGTCTCAAGCCACTATGCTTCGACTACGCGCTGCGAATGGCTCAGTCATTCCCACCTATGGTACACGACAACTTACGGTCAACCTGAGCAACCGACGACAGTATCTGTGGACGTTCATCATTGCCGATGTTCCCACAGCTATACTCGGTATCGATTTCCTACAGCACTATGAATTGCTAGTCGATTCACGTAGGCTGCAGCTAATTGATACTTCGTCGAACAGCAACTTTATGGGCTCTAAAGCCCACACAAACGCGTACCGAATCACAGGTGTATTTCATTTGCGTGACGATTTATTCCACGCTTTATTTCAGAAATTCCCCAAATTAACTAAACCTCTCGAGGAGACTCCATCGGTGACCAATCGTGTGGTACACCACATAGTCACCCGCGGACCACCAGTCACGGCAAGACCTCGCCGACTGGCACCGGACAAATAAGCTTTCGCTAAACGTGAGTTTGACAATTTACTAGCTACTGGTATTATTCGTCCTTCTCACAGTCCTTGGGCCTCACCTCTCCACATGGTTCGAAAAACGGATGGGGTTAGTTGGAGACCATGCGGAGACTACNCAGCGTTAAACACAGCTACACGTTTCGATAGCTATCCCATCCCCCACATACATGACATCACGGCATCACTCAAGGGG]

[+] EMBL BF936382             [TTCCCGTTCTAACGTTGATCTCGATGCTAGACGACCTCCGGCTCATGGGGATAGGGACAGATGTATCCATACTCGTCTCAGTTTCCGAGACCGCGCAAATGTGCCAGCCCCCTACGTCCCCCGACCCAGGTCACAATCTCGAAAAGCCGTAACGACTCGCCCCAAGCGGGCATCTTCCAAGCCACGCCAGAAGGCGGTTTCGGAAGCGAGTCCAGGTTGGTGCTGGTTTCACCGTGCTTTCGGAGCCGGTGCCCGTCATTGTCGAGCTCCCTGCTCATACAAGGCGGGAAACTTCTCAGCCGGCGAGTAAATGCGGCCGTACTCGCCGGCACTTCACCTCAGGTTGGCCGTTTATTTTACGTGCACGATTATCGCACCAACGCTAGGTACCTTGTGGATACGGGTGCCCAAGTTTCTGTCGTACCTATCGGTAACAGTAAGTCTCAAGCCACTATGCTTCGACTACGCGCTGCGAATGGCTCAGTCATTCCCACCTATGGTACACGACAACTTACGGTCAACCTGAGCAACCGACGACAGTATCTGTGGACGTTCATCATTGCCGATGTTCCCACAGCTATACTCGGTATCGATTTCCTACAGCACTATGAATTGCTAGTCGATTCACGTAGGCTGCAGCTAATTGATACTTCGTCGAACAGCAACTTTATGGGC                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AI976475             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACGTTCATCATTGCCGATGTTCCCACAGCTATACTCGGTATCGATTTCCTACAGCACTATGAATTGCTAGTCGATTCACGTAGGCTGCAGCTAATTGATACTTCGTCGAACAGCAACTTTATGGGCTCTAAAGCCCACACAAACGCGTACCGAATCACAGGTGTATTTCATTTGCGTGACGATTTATTCCACGCTTTATTTCAGAAATTCCCCAAATTAACTAAACCTCTCGAGGAGACTCCATCGGTGACCAATCGTGTGGTACACCACATAGTCACCCGCGGACCACCAGTCACGGCAAGACCTCGCCGACTGGCACCGGACAAATAAGCTTTCGCTAAACGTGAGTTTGACAATTTACTAGCTACTGGTATTATTCGTCCTTCTCACAGTCCTTGGGCCTCACCTCTCCACATGGTTCGAAAAACGGATGGGGTTAGTTGGAGACCATGCGGAGACTACNCAGCGTTAAACACAGCTACACGTTTCGATAGCTATCCCATCCCCCACATACATGACATCACGGCATCACTCAAGGGG]
[+] EMBL AI976474             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACGTTCATCATTGCCGATGTTCCCACAGCTATACTCGGTATCGATTTCCTACAGCACTATGAATTGCTAGTCGATTCACGTAGGCTGCAGCTAATTGATACTTCGTCGAACAGCAACTTTATGGGCTCTAAAGCCCACACAAACGCGTACCGAATCACAGGTGTATTTCATTTGCGTGACGATTTATTCCACGCTTTATTTCAGAAATTCCCCAAATTAACTAAACCTCTCGAGGAGACTCCATCGGTGACCAATCGTGTGGTACACCACATAGTCACCCGCGGACCACCAGTCACGGCAAGACCTCGCCGACTGGCACCGGACAAATAAGCTTTCGCTAAACGTGAGTTTGACAATTTACTAGCTACTGGTATTATTCGTCCTTCTCACAGTCCTTGGGCCTCACCTCTCC                                                                                                                                ]




>consensus_6089#0
TTCCCGTTCTAACGTTGATCTCGATGCTAGACGACCTCCGGCTCATGGGGATAGGGACAG
ATGTATCCATACTCGTCTCAGTTTCCGAGACCGCGCAAATGTGCCAGCCCCCTACGTCCC
CCGACCCAGGTCACAATCTCGAAAAGCCGTAACGACTCGCCCCAAGCGGGCATCTTCCAA
GCCACGCCAGAAGGCGGTTTCGGAAGCGAGTCCAGGTTGGTGCTGGTTTCACCGTGCTTT
CGGAGCCGGTGCCCGTCATTGTCGAGCTCCCTGCTCATACAAGGCGGGAAACTTCTCAGC
CGGCGAGTAAATGCGGCCGTACTCGCCGGCACTTCACCTCAGGTTGGCCGTTTATTTTAC
GTGCACGATTATCGCACCAACGCTAGGTACCTTGTGGATACGGGTGCCCAAGTTTCTGTC
GTACCTATCGGTAACAGTAAGTCTCAAGCCACTATGCTTCGACTACGCGCTGCGAATGGC
TCAGTCATTCCCACCTATGGTACACGACAACTTACGGTCAACCTGAGCAACCGACGACAG
TATCTGTGGACGTTCATCATTGCCGATGTTCCCACAGCTATACTCGGTATCGATTTCCTA
CAGCACTATGAATTGCTAGTCGATTCACGTAGGCTGCAGCTAATTGATACTTCGTCGAAC
AGCAACTTTATGGGCTCTAAAGCCCACACAAACGCGTACCGAATCACAGGTGTATTTCAT
TTGCGTGACGATTTATTCCACGCTTTATTTCAGAAATTCCCCAAATTAACTAAACCTCTC
GAGGAGACTCCATCGGTGACCAATCGTGTGGTACACCACATAGTCACCCGCGGACCACCA
GTCACGGCAAGACCTCGCCGACTGGCACCGGACAAATAAGCTTTCGCTAAACGTGAGTTT
GACAATTTACTAGCTACTGGTATTATTCGTCCTTCTCACAGTCCTTGGGCCTCACCTCTC
CACATGGTTCGAAAAACGGATGGGGTTAGTTGGAGACCATGCGGAGACTACNCAGCGTTA
AACACAGCTACACGTTTCGATAGCTATCCCATCCCCCACATACATGACATCACGGCATCA
CTCAAGGGG

consensusID : consensus_6089#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [ACTGGGGATCGATAGCATTACCAGCGAGTATCCAGCCAACTCTTACGGCCCTGCTCGAGGACACCCCCCTCAACTAGATGCCCCTCATAGCAGACAAAATTATAGCACGAGCTAGCGCCTAAGACGATATATATTGTTGCCTCTACTTCCCGTTCAAACATGGATTTCGATGCTAGACGACCTTCGGCTCATGTGGATAGGGATAAGTGTATCCATACTCGTCTCAGTTTCCGAGACCGCGCAAATGTGCCTGCCCCTTACGTCCCCCGAC]

[-] EMBL BG930955             [ACTGGGGATCGATAGCATTACCAGCGAGTATCCAGCCAACTCTTACGGCCCTGCTCGAGGACACCCCCCTCAACTAGATGCCCCTCATAGCAGACAAAATTATAGCACGAGCTAGCGCCTAAGACGATATATATTGTTGCCTCTACTTCCCGTTCAAACATGGATTTCGATGCTAGACGACCTTCGGCTCATGTGGATAGGGATAAGTGTATCCATACTCGTCTCAGTTTCCGAGACCGCGCAAATGTGCCTGCCCCTTACGTCCCCCGAC]




>consensus_6089#1
ACTGGGGATCGATAGCATTACCAGCGAGTATCCAGCCAACTCTTACGGCCCTGCTCGAGG
ACACCCCCCTCAACTAGATGCCCCTCATAGCAGACAAAATTATAGCACGAGCTAGCGCCT
AAGACGATATATATTGTTGCCTCTACTTCCCGTTCAAACATGGATTTCGATGCTAGACGA
CCTTCGGCTCATGTGGATAGGGATAAGTGTATCCATACTCGTCTCAGTTTCCGAGACCGC
GCAAATGTGCCTGCCCCTTACGTCCCCCGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6089#0      TTCCCGTTCTAACGTTGATCTCGATGCTAGACGACCTCCGGCTCATGGGGATAGGGACAG 60
consensus_6089#1      ------------------------------------------------------------
                                                                                  

consensus_6089#0      ATGTATCCATACTCGTCTCAGTTTCCGAGACCGCGCAAATGTGCCAGCCCCCTACGTCCC 120
consensus_6089#1      ------------------------------------------------------------
                                                                                  

consensus_6089#0      CCGACCCAGGTCACAATCTCGAAAAGCCGTAACGACTCGCCCCAAGCGGGCATCTTCCAA 180
consensus_6089#1      ------------------------------------------------------------
                                                                                  

consensus_6089#0      GCCACGCCAGAAGGCGGTTTCGGAAGCGAGTCCAGGTTGGTGCTGGTTTCACCGTGCTTT 240
consensus_6089#1      ------------------------------------------------------------
                                                                                  

consensus_6089#0      CGGAGCCGGTGCCCGTCATTGTCGAGCTCCCTGCTCATACAAGGCGGGAAACTTCTCAGC 300
consensus_6089#1      ------------------------------------------------------------
                                                                                  

consensus_6089#0      CGGCGAGTAAATGCGGCCGTACTCGCCGGCACTTCACCTCAGGTTGGCCGTTTATTTTAC 360
consensus_6089#1      ------------------------ACTGGGGATCGATAGCA--TTACCAGCGAGTATCCA 34
                                               * **   *  *   **  **  * *    * *   

consensus_6089#0      GTGCACGATTATCGCACCAACGCTAGGTACCTTGTGGATACGGGTGCCCAA-GTTTCTGT 419
consensus_6089#1      GCCAACTCTTACGGCCCTGCTCGAGGACACCCCCCTCAACTAGATGCCCCTCATAGCAGA 94
                      *   **  ***  ** *        *  ***      *    * *****    *  * * 

consensus_6089#0      CGTACCTATCGGTAACAGTAAGTCTCAAGCCACTATGCTTCGACTACGCGCTGCGAATGG 479
consensus_6089#1      CAAAATTATAGCACGAGCTAGCGCCTAAGACGATATATATTG-TTGC-CTCTACTTCCCG 152
                      *  *  *** *       **   *  *** *  ***   * *  * * * ** *     *

consensus_6089#0      CTCAGTCATTCCCACCTATGGTACACGACAACTTACGGTCAACCTGAGCAACCGACGACA 539
consensus_6089#1      TTCAAACATGGATTTCGATGCTA---GACGACCTTCGGCTCATGTGGATAGG-GATAAGT 208
                       ***  ***      * *** **   *** ** * ***   *  **   *   **  *  

consensus_6089#0      GTATCTGTGGACGTTCATCATTGCCGATGTTCCCACAGCTATACTCGGTATCGATTTCCT 599
consensus_6089#1      GTATCCATACTCGTC--TCAGTTTCCGAGACCGCGCAAATGTGCCTGCCCCTTACGTCCC 266
                      *****  *   ***   *** *  *   *  * * **  * * *  *      *  *** 

consensus_6089#0      ACAGCACTATGAATTGCTAGTCGATTCACGTAGGCTGCAGCTAATTGATACTTCGTCGAA 659
consensus_6089#1      CCGAC------------------------------------------------------- 271
                       *  *                                                       

consensus_6089#0      CAGCAACTTTATGGGCTCTAAAGCCCACACAAACGCGTACCGAATCACAGGTGTATTTCA 719
consensus_6089#1      ------------------------------------------------------------
                                                                                  

consensus_6089#0      TTTGCGTGACGATTTATTCCACGCTTTATTTCAGAAATTCCCCAAATTAACTAAACCTCT 779
consensus_6089#1      ------------------------------------------------------------
                                                                                  

consensus_6089#0      CGAGGAGACTCCATCGGTGACCAATCGTGTGGTACACCACATAGTCACCCGCGGACCACC 839
consensus_6089#1      ------------------------------------------------------------
                                                                                  

consensus_6089#0      AGTCACGGCAAGACCTCGCCGACTGGCACCGGACAAATAAGCTTTCGCTAAACGTGAGTT 899
consensus_6089#1      ------------------------------------------------------------
                                                                                  

consensus_6089#0      TGACAATTTACTAGCTACTGGTATTATTCGTCCTTCTCACAGTCCTTGGGCCTCACCTCT 959
consensus_6089#1      ------------------------------------------------------------
                                                                                  

consensus_6089#0      CCACATGGTTCGAAAAACGGATGGGGTTAGTTGGAGACCATGCGGAGACTACNCAGCGTT 1019
consensus_6089#1      ------------------------------------------------------------
                                                                                  

consensus_6089#0      AAACACAGCTACACGTTTCGATAGCTATCCCATCCCCCACATACATGACATCACGGCATC 1079
consensus_6089#1      ------------------------------------------------------------
                                                                                  

consensus_6089#0      ACTCAAGGGG 1089
consensus_6089#1      ----------