cluster # 6098

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Schistosoma mansoni
cluster # 6098 cluster # 6098 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6098#0 length = 535 sequences # 1

consensus_6098#1 length = 512 sequences # 3

consensusID : consensus_6098#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence

                              [ACACGGGTCCTGTGATAGACCAATCAACCTCTACTGAGAGCGAATGTCTCTAGCTAACTCATTATATAGACTAGATAAACATGAAAGCATGGCAGAAGGGGATCGACAAAAGCATCTGGGCTTTGACCTTAAAACACAAGTCAGGATATATTCTTTTAAAATAATTTACGTCATAAAACTCTACACTCACCGTCAGTAGTACTATCCCAATAACAAGAGCTTGCAGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTGACTAGAAGTGATGTTAACATAATTCCGTCAAGCATACCGATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGACTGAGGCATTGTTCAATCACAGACGAAGTCCACTGTTGTACTTTATTATGTGAATAAGAACTAGAACCAATGATGCCTTCTATGCTCTCTTTAACTATGTTTTTTTACTTCGTCTTGGACAAGGTTGTCTATTAAATAAAACTGTGATAATGTGAAGAATTACCTCTTCAGATGTTTGCAAATCATCCATTAT]

[+] EMBL CD195373             [ACACGGGTCCTGTGATAGACCAATCAACCTCTACTGAGAGCGAATGTCTCTAGCTAACTCATTATATAGACTAGATAAACATGAAAGCATGGCAGAAGGGGATCGACAAAAGCATCTGGGCTTTGACCTTAAAACACAAGTCAGGATATATTCTTTTAAAATAATTTACGTCATAAAACTCTACACTCACCGTCAGTAGTACTATCCCAATAACAAGAGCTTGCAGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTGACTAGAAGTGATGTTAACATAATTCCGTCAAGCATACCGATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGACTGAGGCATTGTTCAATCACAGACGAAGTCCACTGTTGTACTTTATTATGTGAATAAGAACTAGAACCAATGATGCCTTCTATGCTCTCTTTAACTATGTTTTTTTACTTCGTCTTGGACAAGGTTGTCTATTAAATAAAACTGTGATAATGTGAAGAATTACCTCTTCAGATGTTTGCAAATCATCCATTAT]




>consensus_6098#0
ACACGGGTCCTGTGATAGACCAATCAACCTCTACTGAGAGCGAATGTCTCTAGCTAACTC
ATTATATAGACTAGATAAACATGAAAGCATGGCAGAAGGGGATCGACAAAAGCATCTGGG
CTTTGACCTTAAAACACAAGTCAGGATATATTCTTTTAAAATAATTTACGTCATAAAACT
CTACACTCACCGTCAGTAGTACTATCCCAATAACAAGAGCTTGCAGTATGTAGTCCAGCT
CCACTTTTCTGCATTATTACACATGTGACTAGAAGTGATGTTAACATAATTCCGTCAAGC
ATACCGATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGACTGAGGCATTGTTCAATC
ACAGACGAAGTCCACTGTTGTACTTTATTATGTGAATAAGAACTAGAACCAATGATGCCT
TCTATGCTCTCTTTAACTATGTTTTTTTACTTCGTCTTGGACAAGGTTGTCTATTAAATA
AAACTGTGATAATGTGAAGAATTACCTCTTCAGATGTTTGCAAATCATCCATTAT

consensusID : consensus_6098#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 512
fasta sequence

                              [GTCAACGAAAATATTATAAAGTTCATATCACGTTAAAACCCCAAAAAAACCAATGTTCACCAGTTGTTTAGAATACAGACGGTCTTAATACAATCTGATTAGTTGTTTTGAAACTATTTCTTTGGTCGACAAGGATTATATTGCTAAGCCAAACACTGTAACGATAAAATACATAGACTTGTTTTCCCATTTTACTGTACAACTCCCGTCAGTAGTACTATCCCAATAACAAGAGCTTGCAGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTGACGATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGACTGAGGCATTGTTCAATCACAGACGAAGTCCACTGTTGTACTTTATTATGTGAATAAGAACTAGAACCAATGATGCCTTCTATGCTCTCTTTAACTATGTTTTCTACTTCGTCTTGGACAAAGGTTGTCTCTTCAGATGTTTGCAAATCATCCATTATGCACTGAAACCAAATTACACGGCAGCTCGTGC]

[+] EMBL BG931578             [GTCAACGAAAATATTATAAAGTTCATATCACGTTAAAACCCCAAAAAAACCAATGTTCACCAGTTGTTTAGAATACAGACGGTCTTAATACAATCTGATTAGTTGTTTTGAAACTATTTCTTTGGTCGACAAGGATTATATTGCTAAGCCAAACACTGTAACGATAAAATACATAGACTTGTTTTCCCATTTTACTGTACAACTCCCGTCAGTAGTACTATCCCAATAACAAGAGCTTGCAGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTGACGATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGACTG                                                                                                                                                                                           ]
[+] EMBL CD186751             [                                                                                                                                                     ccatCACTGTAACGATAAAATACATAGACTTGTTTTCCCATTTTACTGTACAACTCCCGTCAGTAGTACTATCCCAATAACAAGAGCTTGCAGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTAACGATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGACTGAGGCATTGTTCAATCACAGACGAAGTCCACTGTTGTACTTTATTATGTGAATAA                                                                                                                                     ]
[-] EMBL AA629498             [                                                                                                                                                                                                                TCAGTAGTACTATCCCAATAACAAGAGCTTGCAGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTGACGATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGACTGAGGCATTGTTCAATCACAGACGAAGTCCACTGTTGTACTTTATTATGTGAATAAGAACTAGAACCAATGATGCCTTCTATGCTCTCTTTAACTATGTTTTCTACTTCGTCTTGGACAAAGGTTGTCTCTTCAGATGTTTGCAAATCATCCATTATGCACTGAAACCAAATTACACGGCAGCTCGTGC]




>consensus_6098#1
GTCAACGAAAATATTATAAAGTTCATATCACGTTAAAACCCCAAAAAAACCAATGTTCAC
CAGTTGTTTAGAATACAGACGGTCTTAATACAATCTGATTAGTTGTTTTGAAACTATTTC
TTTGGTCGACAAGGATTATATTGCTAAGCCAAACACTGTAACGATAAAATACATAGACTT
GTTTTCCCATTTTACTGTACAACTCCCGTCAGTAGTACTATCCCAATAACAAGAGCTTGC
AGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTGACGATGTACTTAAAAGG
TTTTCCAAGTTTAGTCAGCTGACTGAGGCATTGTTCAATCACAGACGAAGTCCACTGTTG
TACTTTATTATGTGAATAAGAACTAGAACCAATGATGCCTTCTATGCTCTCTTTAACTAT
GTTTTCTACTTCGTCTTGGACAAAGGTTGTCTCTTCAGATGTTTGCAAATCATCCATTAT
GCACTGAAACCAAATTACACGGCAGCTCGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6098#0      ----ACACGGGTCCTGTGA----TAGACCA-ATCAACCTCTACTGAGAGCGAATGTCTCT 51
consensus_6098#1      GTCAACGAAAATATTATAAAGTTCATATCACGTTAAAACCCCAAAAAAACCAATGTTCAC 60
                          **     *  * * *     * * **  * **   *     * * * *****    

consensus_6098#0      AGCTAACTCATTATATAGAC----TAGATA-AACATGAAAGCATGGCAGAAGGGGATCGA 106
consensus_6098#1      CAGTTGTTTAGAATACAGACGGTCTTAATACAATCTGATTAGTTGTTTTGAAACTATTTC 120
                         *   * *  *** ****    *  *** **  ***     **     *    **   

consensus_6098#0      CAAAAGCATCTGGGCTTTGACCTTAAAACACAA----GTCAGGATATATTCTTTTAAAAT 162
consensus_6098#1      TTTGGTCGACAAGGATTATATTGCTAAGCCAAACACTGTAACGATAAAATACATAGACTT 180
                            *  *  ** **  *     ** *  **    ** * **** * *   *  *  *

consensus_6098#0      AATTTACGTCATAAAACTCTACACTCACCGTCAGTAGTACTATCCCAATAACAAGAGCTT 222
consensus_6098#1      GTTTTCC--CATTTTACTGTACAACTCCCGTCAGTAGTACTATCCCAATAACAAGAGCTT 238
                        *** *  ***   *** ****    *********************************

consensus_6098#0      GCAGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTGACTAGAAGTGATGTT 282
consensus_6098#1      GCAGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTGAC------------- 285
                      ***********************************************             

consensus_6098#0      AACATAATTCCGTCAAGCATACCGATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGA 342
consensus_6098#1      -----------------------GATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGA 322
                                             *************************************

consensus_6098#0      CTGAGGCATTGTTCAATCACAGACGAAGTCCACTGTTGTACTTTATTATGTGAATAAGAA 402
consensus_6098#1      CTGAGGCATTGTTCAATCACAGACGAAGTCCACTGTTGTACTTTATTATGTGAATAAGAA 382
                      ************************************************************

consensus_6098#0      CTAGAACCAATGATGCCTTCTATGCTCTCTTTAACTATGTTTTTTTACTTCGTCTTGGAC 462
consensus_6098#1      CTAGAACCAATGATGCCTTCTATGCTCTCTTTAACTATGTTTTCT-ACTTCGTCTTGGAC 441
                      ******************************************* * **************

consensus_6098#0      AA-GGTTGTCTATTAAATAAAACTGTGATAATGTGAAGAATTACCTCTTCAGAT--GTTT 519
consensus_6098#1      AAAGGTTGTCTCTT---CAGATGTTTGCAAATC--ATCCATTATGCACTGAAACCAAATT 496
                      ** ******** **    * *  * **  ***   *   ****     * * *     **

consensus_6098#0      GCAAATCATCCATTAT 535
consensus_6098#1      ACACGGCAGCTCGTGC 512
                       **   ** *   *