cluster # 6099

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Schistosoma mansoni
cluster # 6099 cluster # 6099 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6099#0 length = 603 sequences # 2

consensus_6099#1 length = 418 sequences # 1
consensus_6099#2 length = 267 sequences # 1

consensusID : consensus_6099#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 603
fasta sequence

                              [GATGACAGTAGATAAGCAACTCGTAGAGACGACAGAATTAGCTGATATTTGTATTGTTGATAATGATGATGATAAAGACGAGTGAAATGAAGATGAATGCGAAGAGATGGCAGCAGTAGATGTTGTAGCAATTACAACAGTAGTCGTCGTCGTCGTAGTATTATACTTCGGTAATGATCCACTTGATGTAGTTTCATTGAAAACAATATCCATGAAATCATCATAGGAATTTTCCAAGGAATTACTATTATCATTATTCACAACAATATCATTGGTAGTCACCTTAGTAGTCAATTGATGATCTGATTTCATGTTTGTCGATAATGATAATGGTGGTTGAACTGATATCGTTGTTTGTTGTTGTTGTTTATGACGTAAATTATAAGGCACATTAAATGAATTATTATTATTATTATTATTGTCTAATGTTTGTGTTGAATTCATATCTGTTGTATATGCATTACACTGTTCANAAGCTTCAAATTGGTCTGATAATGACTCTTCTGTGATTATTGGCTCCATACGAGGAAGTGAACGTTGACGTCGTGCCCTTTCACGATACCATTTANCATCAGATGGTGTATTCATTCGTTTTCATACATA]

[+] EMBL CD115975             [GATGACAGTAGATAAGCAACTCGTAGAGACGACAGAATTAGCTGATATTTGTATTGTTGATAATGATGATGATAAAGACGAGTGAAATGAAGATGAATGCGAAGAGATGGCAGCAGTAGATGTTGTAGCAATTACAACAGTAGTCGTCGTCGTCGTAGTATTATACTTCGGTAATGATCCACTTGATGTAGTTTCATTGAAAACAATATCCATGAAATCATCATAGGAATTTTCCAAGGAATTACTATTATCATTATTCACAACAATATCATTGGTAGTCACCTTAGTAGTCAATTGATGATCTGATTTCATGTTTGTCGATAATGATAATGGTGGTTGAACTGATATCGTTGTTTGTTGTTGTTGTTTATGACGTAAATTATAAGGCACATTAAATGAATTATTATTATTATTATTATTGTCTAATGTTTGTGTTGAATTCATATCTGTTGTATATGCATTACACTGTTCANAAGCTTCAAATTGGTCTGATAATGACTCTTCTGTGATTATTGGCTCCATACGAGGAAGTGAACGTTGACGTCGTGCCCTTTCACGATACCATTTANCATCAGATGGTGTATTCATTCGTTTTCATACATA]
[+] EMBL CD116151             [GATGACAGTAGATAAGCAACTCGTAGAGACGACAGAATTAGCTGATATTTGTATTGTTGATAATGATGATGATAAAGACGAGTGAAATGAAGATGAATGCGAAGAGATGGCAGCAGTAGATGTTGTAGCAATTACAACAGTAGTCGTCGTCGTCGTAGTATTATACTTCGGTAATGATCCACTTGATGTAGTTTCATTGAAAACAATATCCATGAAATCATCATAGGAATTTTCCAAGGAATTACTATTATCATTATTCACAACAATATCATTGGTAGTCACCTTAGTAGTCAATTGATGATCTGATTTCATGTTTGTCGATAATGATAATGGTGGTTGAACTGATATCGTTGTTTGTTGTTGTTGTTTATGACGTAAATTATAAGGCACATTAAATGAATTATTATTATTATTATTATTGTCTAATGTTTGTGTTGAATTCATATCTGTTGTATATGCATTACACTGTTCAAAAGCTTCAAATTGTTCTGATAATGACTCTTCTGTGATTATTGGCTCCATACGAGGAAGTGAACGT                                                                 ]




>consensus_6099#0
GATGACAGTAGATAAGCAACTCGTAGAGACGACAGAATTAGCTGATATTTGTATTGTTGA
TAATGATGATGATAAAGACGAGTGAAATGAAGATGAATGCGAAGAGATGGCAGCAGTAGA
TGTTGTAGCAATTACAACAGTAGTCGTCGTCGTCGTAGTATTATACTTCGGTAATGATCC
ACTTGATGTAGTTTCATTGAAAACAATATCCATGAAATCATCATAGGAATTTTCCAAGGA
ATTACTATTATCATTATTCACAACAATATCATTGGTAGTCACCTTAGTAGTCAATTGATG
ATCTGATTTCATGTTTGTCGATAATGATAATGGTGGTTGAACTGATATCGTTGTTTGTTG
TTGTTGTTTATGACGTAAATTATAAGGCACATTAAATGAATTATTATTATTATTATTATT
GTCTAATGTTTGTGTTGAATTCATATCTGTTGTATATGCATTACACTGTTCANAAGCTTC
AAATTGGTCTGATAATGACTCTTCTGTGATTATTGGCTCCATACGAGGAAGTGAACGTTG
ACGTCGTGCCCTTTCACGATACCATTTANCATCAGATGGTGTATTCATTCGTTTTCATAC
ATA

consensusID : consensus_6099#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [GATGACAGTAGATAAGCAACTCGTAGAGACGACAGAATTAGCTGATATTTGTATTGTTGATAATGATGATGATAAAGACGAGTGAAATGAAGATGAATGCGAAGAGATGGCAGCAGTAGATGTTGTAGCAATTACAACAGTAGTCGTCGTCGTCGTAGTATTATACTTCGGTAATGATCCACTTGATGTAGTAAACTTCCTTGGTTGGCATATTACAGTAAAGCCTGGTTAAGGTCTCATTGAAATCATCAGACTGCATCACGAGTCCGGGCATAAGTTAGAATTTTCATTGAAAACAATATCCATGAAATCATCATAGGAATTTTCCAAGGAATTACTATTATCATTATTCACAACAATATCATTGGTAGTCACCTTAGTAGTCAATTGATGATCTGATTTCATGTTTGTCGATAAT]

[+] EMBL CD116240             [GATGACAGTAGATAAGCAACTCGTAGAGACGACAGAATTAGCTGATATTTGTATTGTTGATAATGATGATGATAAAGACGAGTGAAATGAAGATGAATGCGAAGAGATGGCAGCAGTAGATGTTGTAGCAATTACAACAGTAGTCGTCGTCGTCGTAGTATTATACTTCGGTAATGATCCACTTGATGTAGTAAACTTCCTTGGTTGGCATATTACAGTAAAGCCTGGTTAAGGTCTCATTGAAATCATCAGACTGCATCACGAGTCCGGGCATAAGTTAGAATTTTCATTGAAAACAATATCCATGAAATCATCATAGGAATTTTCCAAGGAATTACTATTATCATTATTCACAACAATATCATTGGTAGTCACCTTAGTAGTCAATTGATGATCTGATTTCATGTTTGTCGATAAT]




>consensus_6099#1
GATGACAGTAGATAAGCAACTCGTAGAGACGACAGAATTAGCTGATATTTGTATTGTTGA
TAATGATGATGATAAAGACGAGTGAAATGAAGATGAATGCGAAGAGATGGCAGCAGTAGA
TGTTGTAGCAATTACAACAGTAGTCGTCGTCGTCGTAGTATTATACTTCGGTAATGATCC
ACTTGATGTAGTAAACTTCCTTGGTTGGCATATTACAGTAAAGCCTGGTTAAGGTCTCAT
TGAAATCATCAGACTGCATCACGAGTCCGGGCATAAGTTAGAATTTTCATTGAAAACAAT
ATCCATGAAATCATCATAGGAATTTTCCAAGGAATTACTATTATCATTATTCACAACAAT
ATCATTGGTAGTCACCTTAGTAGTCAATTGATGATCTGATTTCATGTTTGTCGATAAT

consensusID : consensus_6099#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 267
fasta sequence

                              [TAGTGGNTCATTACCGAAGTATAATACTACGACGANGACGACTACTGTTGTAATTGATACAACATCTACTGNTGGCATCTCTTCGCATTNACGTANAGAAATTCCCCTCTGTACNTGATCGTATCACCAGNTGCAGCTAGTCTCTTTCTCTCATCAGAGGTTNCACCAACTGGGCCANNTCGTNTTTTCCCATAGTTAAACGATGTTTCTGTGTCATATAAAGGAATCAACAACAATATGGTCGNNCCAGGTNGTTANTACTTCCAN]

[+] EMBL SMRAP156             [TAGTGGNTCATTACCGAAGTATAATACTACGACGANGACGACTACTGTTGTAATTGATACAACATCTACTGNTGGCATCTCTTCGCATTNACGTANAGAAATTCCCCTCTGTACNTGATCGTATCACCAGNTGCAGCTAGTCTCTTTCTCTCATCAGAGGTTNCACCAACTGGGCCANNTCGTNTTTTCCCATAGTTAAACGATGTTTCTGTGTCATATAAAGGAATCAACAACAATATGGTCGNNCCAGGTNGTTANTACTTCCAN]




>consensus_6099#2
TAGTGGNTCATTACCGAAGTATAATACTACGACGANGACGACTACTGTTGTAATTGATAC
AACATCTACTGNTGGCATCTCTTCGCATTNACGTANAGAAATTCCCCTCTGTACNTGATC
GTATCACCAGNTGCAGCTAGTCTCTTTCTCTCATCAGAGGTTNCACCAACTGGGCCANNT
CGTNTTTTCCCATAGTTAAACGATGTTTCTGTGTCATATAAAGGAATCAACAACAATATG
GTCGNNCCAGGTNGTTANTACTTCCAN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6099#0      GATGACAGTAGATAAGCAACTCGTAGAGACGACAGAATTAGCTGATATTTGTATTGTTGA 60
consensus_6099#1      GATGACAGTAGATAAGCAACTCGTAGAGACGACAGAATTAGCTGATATTTGTATTGTTGA 60
consensus_6099#2      ------------------------------------------------------------
                                                                                  

consensus_6099#0      TAATGATGATGATAAAGACGAGTGAAATGAAGATGAATGCGAAGAGATGGCAGCAGTAGA 120
consensus_6099#1      TAATGATGATGATAAAGACGAGTGAAATGAAGATGAATGCGAAGAGATGGCAGCAGTAGA 120
consensus_6099#2      ------------------------------------------------------------
                                                                                  

consensus_6099#0      TGTTGTAGCAATTACAACAGTAGTCGTCGTCGTCGTAGTATTATACTTCGGTAATGATC- 179
consensus_6099#1      TGTTGTAGCAATTACAACAGTAGTCGTCGTCGTCGTAGTATTATACTTCGGTAATGATC- 179
consensus_6099#2      -----------------TAGTGG--NTCATTACCGAAGTATAATACTACGACGANGACGA 41
                                        *** *   ** *   ** ***** ***** **   * **   

consensus_6099#0      CACTTGATGTAGTTTCATTGAAAACAATATCCATGAAATCATCATAGGAATTTTCCAAGG 239
consensus_6099#1      CACTTGATGTAGTAAACTT-----CCTTGGTTGGCATATTACAGTAAAGCCTGGTTAAGG 234
consensus_6099#2      CTACTGTTGTAATTGATACAACATCTACTGNTGGCATCTCTTCGCATTNACGTANAGAAA 101
                      *   ** **** *           *          *  *      *           *  

consensus_6099#0      AATTACTATTATCATTATTCACAACAATATCATTGGTAGTCACCTTAGTAGTCAATTGAT 299
consensus_6099#1      TCTCATTGAAATCATCA-----GACTGCATCACGAGTCCGGGCATAAGT--TAGAATTTT 287
consensus_6099#2      TTCCCCTCTGTACNT-------GATCGTATCACCAGNTGCAGC--TAGTC-TCTTTCTCT 151
                            *     * *        *    ****   *      *   ***  *       *

consensus_6099#0      GATCTGATTTCATGTTTGTCGATAATGATAATGGTGGTTGAACTGATATCGTTGTTTGTT 359
consensus_6099#1      CATTGAAAACAATATCCATGAA--ATCATCATAGGAATTTTCCAAGGA--ATTACT-ATT 342
consensus_6099#2      CATCAGAGGTTNCACCAACTGG--GCCANN-TCGTNTTTTCCCATAGTTAAACGAT-GTT 207
                       **   *                    *   * *   **   *            *  **

consensus_6099#0      GTTGTTGTTTATGACGTAAATTATAAGGCACATTAAATGAATTATTATTATTATTATTAT 419
consensus_6099#1      ATCATTATTCACAACA-ATATCATT-GGTA-GTCACCTTAGTAGTCA--ATTGATGATCT 397
consensus_6099#2      TCTGTGTCATATAAAG-GAATCAACAACAATATGGTCGNNCCAGGTN--GTTANTACTTC 264
                          *     *  *     ** *      *  *                 **  *  *  

consensus_6099#0      TGTCTAATGTTTGTGTTGAATTCATATCTGTTGTATATGCATTACACTGTTCANAAGCTT 479
consensus_6099#1      GATTTCATGTTTGTCGATAAT--------------------------------------- 418
consensus_6099#2      CAN--------------------------------------------------------- 267
                                                                                  

consensus_6099#0      CAAATTGGTCTGATAATGACTCTTCTGTGATTATTGGCTCCATACGAGGAAGTGAACGTT 539
consensus_6099#1      ------------------------------------------------------------
consensus_6099#2      ------------------------------------------------------------
                                                                                  

consensus_6099#0      GACGTCGTGCCCTTTCACGATACCATTTANCATCAGATGGTGTATTCATTCGTTTTCATA 599
consensus_6099#1      ------------------------------------------------------------
consensus_6099#2      ------------------------------------------------------------
                                                                                  

consensus_6099#0      CATA 603
consensus_6099#1      ----
consensus_6099#2      ----